Wall clock time and date at job start Mon Mar 8 2021 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00088 * 2 1 4 4 H 1.08998 * 112.85016 * 45.33301 * 3 2 1 5 5 C 1.53787 * 113.61392 * 176.52806 * 3 2 1 6 6 C 1.53780 * 87.07922 * 139.98161 * 5 3 2 7 7 H 1.08998 * 113.61590 * 220.01562 * 6 5 3 8 8 N 1.46508 * 113.61652 * 89.19738 * 6 5 3 9 9 C 1.38610 * 119.99837 * 154.99540 * 8 6 5 10 10 N 1.29684 * 124.94644 * 180.02562 * 9 8 6 11 11 C 1.32121 * 116.86899 * 179.97438 * 10 9 8 12 12 C 1.50700 * 122.71291 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.46910 * 149.97391 * 12 11 10 14 14 Si 1.86300 * 109.47255 * 29.97446 * 12 11 10 15 15 C 1.33331 * 114.57519 * 359.97438 * 11 10 9 16 16 C 1.50702 * 125.95214 * 179.97438 * 15 11 10 17 17 S 1.70966 * 124.95223 * 359.70573 * 9 8 6 18 18 C 1.53782 * 113.61502 * 274.13510 * 3 2 1 19 19 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47070 * 300.00061 * 1 2 3 21 21 H 1.09001 * 109.46593 * 60.00058 * 1 2 3 22 22 H 1.09004 * 113.61165 * 254.52547 * 5 3 2 23 23 H 1.08993 * 113.61363 * 25.43472 * 5 3 2 24 24 H 0.96993 * 119.99556 * 335.00652 * 8 6 5 25 25 H 1.08997 * 109.46759 * 269.97055 * 12 11 10 26 26 H 0.96703 * 114.00224 * 299.99815 * 13 12 11 27 27 H 1.48490 * 110.00066 * 179.97438 * 14 12 11 28 28 H 1.48498 * 109.99780 * 301.32027 * 14 12 11 29 29 H 1.08998 * 109.46788 * 89.99688 * 16 15 11 30 30 H 1.08995 * 109.47627 * 210.00456 * 16 15 11 31 31 H 1.09001 * 109.46678 * 330.00618 * 16 15 11 32 32 H 1.09003 * 113.61434 * 334.56766 * 18 3 2 33 33 H 1.09004 * 113.61003 * 105.46812 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6293 2.3387 0.7144 5 6 3.7311 2.0513 0.0853 6 6 3.4967 3.1792 -0.9333 7 1 4.2805 3.2570 -1.6868 8 7 3.1699 4.4678 -0.3174 9 6 3.4339 5.6471 -0.9961 10 7 3.1851 6.8366 -0.5432 11 6 3.5028 7.8522 -1.3262 12 6 3.2720 9.2882 -0.9314 13 8 4.2610 10.1161 -1.5466 14 14 3.3914 9.4499 0.9207 15 6 4.0451 7.5041 -2.4934 16 6 4.5001 8.4500 -3.5748 17 16 4.1418 5.7460 -2.5492 18 6 2.2617 2.3906 -1.4054 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 4.0538 2.4069 1.0639 23 1 4.3503 1.2397 -0.2967 24 1 2.7691 4.4955 0.5654 25 1 2.2809 9.6006 -1.2603 26 1 5.1691 9.8945 -1.2988 27 1 3.1663 10.8615 1.3228 28 1 2.3892 8.5695 1.5731 29 1 5.5452 8.7129 -3.4113 30 1 4.3944 7.9685 -4.5469 31 1 3.8899 9.3527 -3.5481 32 1 2.4784 1.6719 -2.1957 33 1 1.3998 3.0195 -1.6285 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12525168_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:11 Heat of formation + Delta-G solvation = 47.007081 kcal Electronic energy + Delta-G solvation = -16679.278729 eV Core-core repulsion = 13960.685453 eV Total energy + Delta-G solvation = -2718.593277 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.16641 -40.39174 -37.73926 -35.20796 -32.46406 -30.00271 -29.27322 -27.03993 -26.48614 -25.50476 -24.31822 -21.37421 -20.55226 -18.93206 -18.12263 -17.86791 -17.07846 -16.81954 -16.56149 -15.71765 -15.65162 -15.41595 -15.32165 -14.67271 -14.27222 -14.24596 -14.13752 -13.78929 -13.78139 -13.65285 -13.32734 -12.79812 -12.60580 -12.32983 -12.08557 -11.89938 -11.74363 -11.11806 -10.94924 -10.56758 -10.30523 -9.99739 -8.78467 -8.62556 -4.85090 0.00803 0.16256 0.62324 0.78484 1.38513 1.46526 1.75215 1.88745 1.93402 2.24301 3.07802 3.13267 3.34834 3.40982 3.53853 3.69966 4.07513 4.11202 4.13790 4.18233 4.34522 4.41793 4.45560 4.54382 4.58643 4.66894 4.70507 4.77386 4.78592 4.90478 5.12722 5.31601 5.55986 6.19146 6.50105 6.94142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.248 6.248 3 C -0.086 4.086 4 H 0.105 0.895 5 C -0.112 4.112 6 C 0.130 3.870 7 H 0.104 0.896 8 N -0.678 5.678 9 C 0.319 3.681 10 N -0.543 5.543 11 C 0.065 3.935 12 C -0.033 4.033 13 O -0.536 6.536 14 Si 0.716 3.284 15 C -0.236 4.236 16 C -0.066 4.066 17 S 0.103 5.897 18 C -0.143 4.143 19 H 0.102 0.898 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.110 0.890 24 H 0.412 0.588 25 H 0.120 0.880 26 H 0.379 0.621 27 H -0.262 1.262 28 H -0.253 1.253 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -2.003 -0.682 2.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.020 6.020 3 C -0.214 4.214 4 H 0.123 0.877 5 C -0.152 4.152 6 C 0.022 3.978 7 H 0.122 0.878 8 N -0.319 5.319 9 C -0.052 4.052 10 N -0.270 5.270 11 C -0.065 4.065 12 C -0.147 4.147 13 O -0.340 6.340 14 Si 0.617 3.383 15 C -0.359 4.359 16 C -0.125 4.125 17 S 0.353 5.647 18 C -0.185 4.185 19 H 0.121 0.879 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.107 0.893 23 H 0.129 0.871 24 H 0.251 0.749 25 H 0.137 0.863 26 H 0.227 0.773 27 H -0.187 1.187 28 H -0.177 1.177 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.926 -3.265 -0.469 3.819 hybrid contribution -1.737 1.459 0.174 2.275 sum 0.189 -1.806 -0.295 1.840 Atomic orbital electron populations 1.23384 0.93964 1.06723 1.05036 1.86936 1.07741 1.09651 1.97623 1.24761 1.00764 0.94839 1.01076 0.87696 1.23160 0.93852 0.97493 1.00665 1.21941 0.97857 0.81579 0.96425 0.87830 1.43565 1.68087 0.99824 1.20381 1.23226 0.97879 0.89543 0.94517 1.65955 1.28816 0.96539 1.35642 1.20130 1.00260 0.95594 0.90516 1.24509 0.94554 0.84505 1.11098 1.86507 1.18411 1.56821 1.72284 0.94071 0.90879 0.79099 0.74290 1.25180 1.13784 0.95118 1.01799 1.20223 1.01799 0.96948 0.93575 1.83990 1.61529 1.04408 1.14820 1.23928 0.99097 0.99312 0.96136 0.87938 0.90461 0.90366 0.89271 0.87137 0.74914 0.86286 0.77332 1.18720 1.17717 0.90972 0.92229 0.89002 0.87280 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.18 10.76 101.05 1.09 1.26 16 2 S -0.25 -0.03 22.17 -107.50 -2.38 -2.41 16 3 C -0.09 0.16 4.15 -25.92 -0.11 0.06 16 4 H 0.10 -0.22 8.14 -51.93 -0.42 -0.64 16 5 C -0.11 0.31 7.42 -25.92 -0.19 0.12 16 6 C 0.13 -0.31 4.32 -67.02 -0.29 -0.60 16 7 H 0.10 -0.28 7.05 -51.93 -0.37 -0.64 16 8 N -0.68 0.58 5.42 -54.90 -0.30 0.29 16 9 C 0.32 0.44 8.24 -87.68 -0.72 -0.29 16 10 N -0.54 -1.61 8.95 -11.36 -0.10 -1.71 16 11 C 0.07 0.14 5.92 -84.18 -0.50 -0.36 16 12 C -0.03 -0.04 2.82 36.01 0.10 0.07 16 13 O -0.54 0.04 9.90 -35.23 -0.35 -0.31 16 14 Si 0.72 0.70 32.08 -169.99 -5.45 -4.76 16 15 C -0.24 -0.30 6.50 -36.02 -0.23 -0.53 16 16 C -0.07 0.02 8.95 36.01 0.32 0.34 16 17 S 0.10 0.04 21.68 -107.50 -2.33 -2.29 16 18 C -0.14 0.32 7.48 -25.83 -0.19 0.13 16 19 H 0.10 -0.19 8.14 -51.92 -0.42 -0.61 16 20 H 0.08 -0.14 8.14 -51.92 -0.42 -0.57 16 21 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 22 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 23 H 0.11 -0.32 8.10 -51.93 -0.42 -0.74 16 24 H 0.41 -0.55 8.83 -40.82 -0.36 -0.91 16 25 H 0.12 0.17 7.96 -51.93 -0.41 -0.24 16 26 H 0.38 -1.31 8.68 45.56 0.40 -0.92 16 27 H -0.26 -0.89 7.11 56.52 0.40 -0.48 16 28 H -0.25 -1.13 7.11 56.52 0.40 -0.72 16 29 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 30 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.09 0.03 6.62 -51.93 -0.34 -0.31 16 32 H 0.11 -0.26 8.10 -51.93 -0.42 -0.68 16 33 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 LS Contribution 301.45 15.07 4.54 4.54 Total: 0.00 -5.10 301.45 -11.61 -16.71 By element: Atomic # 1 Polarization: -5.76 SS G_CDS: -4.51 Total: -10.27 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.73 Total: 0.19 kcal Atomic # 7 Polarization: -1.02 SS G_CDS: -0.40 Total: -1.42 kcal Atomic # 8 Polarization: 0.04 SS G_CDS: -0.35 Total: -0.31 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: -5.45 Total: -4.76 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -4.71 Total: -4.70 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -5.10 -11.61 -16.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12525168_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.719 kcal (2) G-P(sol) polarization free energy of solvation -5.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds