Wall clock time and date at job start Mon Mar 8 2021 04:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00088 * 2 1 4 4 H 1.08998 * 112.85016 * 45.33301 * 3 2 1 5 5 C 1.53787 * 113.61392 * 176.52806 * 3 2 1 6 6 C 1.53780 * 87.07922 * 139.98161 * 5 3 2 7 7 H 1.08998 * 113.61590 * 220.01562 * 6 5 3 8 8 N 1.46508 * 113.61652 * 89.19738 * 6 5 3 9 9 C 1.38610 * 119.99837 * 154.99540 * 8 6 5 10 10 N 1.29684 * 124.94644 * 180.02562 * 9 8 6 11 11 C 1.32121 * 116.86899 * 179.97438 * 10 9 8 12 12 C 1.50700 * 122.71291 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.46910 * 149.97391 * 12 11 10 14 14 Si 1.86300 * 109.47255 * 29.97446 * 12 11 10 15 15 C 1.33331 * 114.57519 * 359.97438 * 11 10 9 16 16 C 1.50702 * 125.95214 * 179.97438 * 15 11 10 17 17 S 1.70966 * 124.95223 * 359.70573 * 9 8 6 18 18 C 1.53782 * 113.61502 * 274.13510 * 3 2 1 19 19 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47070 * 300.00061 * 1 2 3 21 21 H 1.09001 * 109.46593 * 60.00058 * 1 2 3 22 22 H 1.09004 * 113.61165 * 254.52547 * 5 3 2 23 23 H 1.08993 * 113.61363 * 25.43472 * 5 3 2 24 24 H 0.96993 * 119.99556 * 335.00652 * 8 6 5 25 25 H 1.08997 * 109.46759 * 269.97055 * 12 11 10 26 26 H 0.96703 * 114.00224 * 299.99815 * 13 12 11 27 27 H 1.48490 * 110.00066 * 179.97438 * 14 12 11 28 28 H 1.48498 * 109.99780 * 301.32027 * 14 12 11 29 29 H 1.08998 * 109.46788 * 89.99688 * 16 15 11 30 30 H 1.08995 * 109.47627 * 210.00456 * 16 15 11 31 31 H 1.09001 * 109.46678 * 330.00618 * 16 15 11 32 32 H 1.09003 * 113.61434 * 334.56766 * 18 3 2 33 33 H 1.09004 * 113.61003 * 105.46812 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6293 2.3387 0.7144 5 6 3.7311 2.0513 0.0853 6 6 3.4967 3.1792 -0.9333 7 1 4.2805 3.2570 -1.6868 8 7 3.1699 4.4678 -0.3174 9 6 3.4339 5.6471 -0.9961 10 7 3.1851 6.8366 -0.5432 11 6 3.5028 7.8522 -1.3262 12 6 3.2720 9.2882 -0.9314 13 8 4.2610 10.1161 -1.5466 14 14 3.3914 9.4499 0.9207 15 6 4.0451 7.5041 -2.4934 16 6 4.5001 8.4500 -3.5748 17 16 4.1418 5.7460 -2.5492 18 6 2.2617 2.3906 -1.4054 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 4.0538 2.4069 1.0639 23 1 4.3503 1.2397 -0.2967 24 1 2.7691 4.4955 0.5654 25 1 2.2809 9.6006 -1.2603 26 1 5.1691 9.8945 -1.2988 27 1 3.1663 10.8615 1.3228 28 1 2.3892 8.5695 1.5731 29 1 5.5452 8.7129 -3.4113 30 1 4.3944 7.9685 -4.5469 31 1 3.8899 9.3527 -3.5481 32 1 2.4784 1.6719 -2.1957 33 1 1.3998 3.0195 -1.6285 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12525168_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:10 Heat of formation + Delta-G solvation = 52.424166 kcal Electronic energy + Delta-G solvation = -16679.043827 eV Core-core repulsion = 13960.685453 eV Total energy + Delta-G solvation = -2718.358374 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.060 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18641 -40.30140 -37.74385 -35.16891 -32.45721 -29.88922 -29.29933 -26.86585 -26.39592 -25.50831 -24.33921 -21.30726 -20.53056 -18.92863 -18.08187 -17.86343 -17.06360 -16.70333 -16.60340 -15.71903 -15.62866 -15.36895 -15.29631 -14.57332 -14.33903 -14.13756 -14.11761 -13.82100 -13.62793 -13.55629 -13.33714 -12.79027 -12.53110 -12.40322 -12.07859 -11.94166 -11.65435 -11.07123 -10.88544 -10.63817 -10.34931 -10.04458 -8.78716 -8.62729 -4.97380 -0.04239 0.13478 0.70375 0.75007 1.29048 1.55898 1.71341 1.81166 1.83750 2.09977 3.23899 3.28978 3.36454 3.53238 3.57627 3.86784 4.15341 4.24276 4.26245 4.27522 4.32025 4.48898 4.58386 4.65246 4.74792 4.81657 4.84350 4.85650 4.88503 4.96248 5.13956 5.36006 5.63042 6.23308 6.66835 6.91877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.293 6.293 3 C -0.077 4.077 4 H 0.106 0.894 5 C -0.105 4.105 6 C 0.133 3.867 7 H 0.111 0.889 8 N -0.673 5.673 9 C 0.310 3.690 10 N -0.572 5.572 11 C 0.051 3.949 12 C -0.029 4.029 13 O -0.539 6.539 14 Si 0.790 3.210 15 C -0.244 4.244 16 C -0.063 4.063 17 S 0.127 5.873 18 C -0.137 4.137 19 H 0.105 0.895 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.115 0.885 24 H 0.414 0.586 25 H 0.113 0.887 26 H 0.395 0.605 27 H -0.294 1.294 28 H -0.303 1.303 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -2.152 -1.309 3.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.065 6.065 3 C -0.206 4.206 4 H 0.124 0.876 5 C -0.144 4.144 6 C 0.025 3.975 7 H 0.128 0.872 8 N -0.313 5.313 9 C -0.062 4.062 10 N -0.299 5.299 11 C -0.079 4.079 12 C -0.143 4.143 13 O -0.346 6.346 14 Si 0.696 3.304 15 C -0.366 4.366 16 C -0.123 4.123 17 S 0.376 5.624 18 C -0.179 4.179 19 H 0.124 0.876 20 H 0.100 0.900 21 H 0.101 0.899 22 H 0.112 0.888 23 H 0.133 0.867 24 H 0.252 0.748 25 H 0.130 0.870 26 H 0.245 0.755 27 H -0.222 1.222 28 H -0.230 1.230 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.661 -3.429 -1.108 4.480 hybrid contribution -1.996 1.472 0.383 2.510 sum 0.664 -1.957 -0.724 2.190 Atomic orbital electron populations 1.23391 0.92372 1.07123 1.05483 1.87054 1.09702 1.12018 1.97725 1.24796 1.01388 0.93044 1.01382 0.87555 1.23145 0.93239 0.97214 1.00823 1.21977 0.97919 0.80946 0.96642 0.87161 1.43680 1.67551 0.99743 1.20358 1.23454 0.97831 0.89698 0.95170 1.65951 1.30001 0.97300 1.36686 1.20232 1.00924 0.95721 0.90995 1.24409 0.94692 0.84463 1.10724 1.86479 1.19370 1.56533 1.72206 0.93216 0.89090 0.75080 0.72975 1.25442 1.13357 0.95972 1.01874 1.20245 1.02492 0.96306 0.93217 1.83840 1.61024 1.03684 1.13835 1.23883 0.98831 0.99113 0.96028 0.87613 0.90029 0.89870 0.88783 0.86720 0.74761 0.86996 0.75505 1.22160 1.23006 0.89467 0.91842 0.89686 0.86899 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.33 10.76 113.37 1.22 1.55 16 2 S -0.29 -0.15 22.17 -56.49 -1.25 -1.40 16 3 C -0.08 0.30 4.15 31.12 0.13 0.43 16 4 H 0.11 -0.44 8.14 -2.39 -0.02 -0.45 16 5 C -0.10 0.63 7.42 31.12 0.23 0.86 16 6 C 0.13 -0.70 4.32 45.58 0.20 -0.51 16 7 H 0.11 -0.69 7.05 -2.39 -0.02 -0.71 16 8 N -0.67 1.20 5.42 -327.60 -1.78 -0.58 16 9 C 0.31 0.85 8.24 179.32 1.48 2.33 16 10 N -0.57 -3.68 8.95 -189.86 -1.70 -5.38 16 11 C 0.05 0.22 5.92 41.41 0.25 0.47 16 12 C -0.03 -0.07 2.82 71.24 0.20 0.13 16 13 O -0.54 0.33 9.90 -148.98 -1.47 -1.14 16 14 Si 0.79 2.35 32.08 68.60 2.20 4.55 16 15 C -0.24 -0.52 6.50 24.58 0.16 -0.36 16 16 C -0.06 0.10 8.95 71.24 0.64 0.73 16 17 S 0.13 0.04 21.68 -56.49 -1.22 -1.19 16 18 C -0.14 0.65 7.48 31.18 0.23 0.88 16 19 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 20 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 21 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 22 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 23 H 0.11 -0.73 8.10 -2.39 -0.02 -0.75 16 24 H 0.41 -1.01 8.83 -92.71 -0.82 -1.83 16 25 H 0.11 0.42 7.96 -2.39 -0.02 0.40 16 26 H 0.39 -3.12 8.68 -74.05 -0.64 -3.76 16 27 H -0.29 -2.36 7.11 99.48 0.71 -1.66 16 28 H -0.30 -3.40 7.11 99.48 0.71 -2.69 16 29 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.08 0.02 6.62 -2.39 -0.02 0.00 16 32 H 0.11 -0.59 8.10 -2.39 -0.02 -0.61 16 33 H 0.07 -0.22 8.14 -2.39 -0.02 -0.23 16 Total: 0.00 -12.41 301.45 -0.79 -13.20 By element: Atomic # 1 Polarization: -14.28 SS G_CDS: -0.29 Total: -14.58 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.73 Total: 6.51 kcal Atomic # 7 Polarization: -2.48 SS G_CDS: -3.47 Total: -5.95 kcal Atomic # 8 Polarization: 0.33 SS G_CDS: -1.47 Total: -1.14 kcal Atomic # 14 Polarization: 2.35 SS G_CDS: 2.20 Total: 4.55 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.48 Total: -2.59 kcal Total: -12.41 -0.79 -13.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12525168_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.625 kcal (2) G-P(sol) polarization free energy of solvation -12.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds