Wall clock time and date at job start Mon Mar 8 2021 04:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.33326 * 125.95243 * 64.71674 * 4 2 1 6 6 N 1.32116 * 114.57684 * 179.82228 * 5 4 2 7 7 C 1.29686 * 116.86962 * 0.48193 * 6 5 4 8 8 N 1.38604 * 124.95236 * 179.73894 * 7 6 5 9 9 C 1.46502 * 120.00042 * 359.97438 * 8 7 6 10 10 H 1.08993 * 112.85168 * 336.20021 * 9 8 7 11 11 C 1.53782 * 113.61344 * 107.50524 * 9 8 7 12 12 C 1.53785 * 87.08377 * 89.11730 * 11 9 8 13 13 H 1.08998 * 113.60789 * 270.88721 * 12 11 9 14 14 S 1.81391 * 113.61392 * 139.98110 * 12 11 9 15 15 C 1.76202 * 103.00226 * 87.50447 * 14 12 11 16 16 C 1.38974 * 120.07407 * 359.72631 * 15 14 12 17 17 C 1.38086 * 119.91350 * 179.76490 * 16 15 14 18 18 C 1.38299 * 120.08427 * 0.48811 * 17 16 15 19 19 C 1.38305 * 120.15571 * 359.76195 * 18 17 16 20 20 C 1.38078 * 120.08299 * 0.02562 * 19 18 17 21 21 C 1.53780 * 113.61679 * 205.00216 * 9 8 7 22 22 S 1.70967 * 110.09843 * 359.73484 * 7 6 5 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 25 25 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 26 26 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 27 27 H 1.08001 * 122.71152 * 0.02562 * 5 4 2 28 28 H 0.97003 * 120.00046 * 179.97438 * 8 7 6 29 29 H 1.09001 * 113.61904 * 203.66813 * 11 9 8 30 30 H 1.09001 * 113.61619 * 334.57105 * 11 9 8 31 31 H 1.07992 * 120.04575 * 359.97438 * 16 15 14 32 32 H 1.08005 * 119.95884 * 180.22886 * 17 16 15 33 33 H 1.08004 * 119.92752 * 179.74471 * 18 17 16 34 34 H 1.08010 * 119.95630 * 179.97438 * 19 18 17 35 35 H 1.08009 * 120.04055 * 179.97438 * 20 19 18 36 36 H 1.09000 * 113.61480 * 25.43409 * 21 9 8 37 37 H 1.08998 * 113.61596 * 156.25105 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.7574 -2.0014 1.5149 6 7 2.2971 -2.3901 2.6564 7 6 2.9102 -1.4844 3.3534 8 7 3.5293 -1.7055 4.5736 9 6 3.5204 -3.0447 5.1676 10 1 2.6942 -3.6601 4.8117 11 6 4.8851 -3.7515 5.1139 12 6 5.1908 -3.0940 6.4701 13 1 5.6540 -2.1111 6.3841 14 16 6.0613 -4.1863 7.6274 15 6 7.7558 -3.9247 7.2210 16 6 8.0999 -3.0411 6.2050 17 6 9.4291 -2.8349 5.8926 18 6 10.4168 -3.5141 6.5824 19 6 10.0777 -4.3981 7.5906 20 6 8.7509 -4.6060 7.9115 21 6 3.6708 -3.0408 6.6980 22 16 2.8436 0.0220 2.5476 23 1 -0.3934 0.4418 0.7650 24 1 1.7924 -0.5139 -0.8899 25 1 1.5616 2.4678 -1.2086 26 1 1.5878 2.4586 1.2241 27 1 1.2218 -2.6756 0.8631 28 1 3.9685 -0.9735 5.0343 29 1 4.8162 -4.8383 5.1612 30 1 5.5264 -3.4019 4.3048 31 1 7.3290 -2.5138 5.6629 32 1 9.6975 -2.1456 5.1056 33 1 11.4554 -3.3540 6.3332 34 1 10.8517 -4.9270 8.1270 35 1 8.4869 -5.2968 8.6987 36 1 3.3318 -2.1175 7.1678 37 1 3.2685 -3.9326 7.1785 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12525226_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:18 Heat of formation + Delta-G solvation = 87.528965 kcal Electronic energy + Delta-G solvation = -20988.591255 eV Core-core repulsion = 17758.850577 eV Total energy + Delta-G solvation = -3229.740678 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.060 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05265 -40.03653 -39.80353 -37.98275 -35.11857 -32.07337 -31.90561 -31.24043 -27.23770 -26.84422 -26.24532 -24.50392 -23.70080 -23.43592 -21.66791 -20.37357 -19.65494 -18.72576 -18.21926 -17.73163 -17.08011 -16.64533 -16.42082 -16.31215 -15.99949 -15.78692 -15.51527 -15.36596 -14.97089 -14.85653 -14.42649 -14.19439 -13.96366 -13.83322 -13.61529 -13.21286 -12.89974 -12.48767 -12.25515 -12.20131 -12.05437 -11.93967 -11.69142 -11.17514 -11.07328 -10.93052 -10.71095 -10.30638 -10.23479 -9.98396 -8.80154 -8.39965 -5.03028 -0.08798 -0.01101 0.21514 0.37077 0.53267 0.64718 1.25186 1.37731 1.53724 1.88268 1.94889 2.09322 2.72790 3.25163 3.26699 3.39013 3.59865 3.66555 3.80229 3.90145 3.92698 4.00193 4.20670 4.42892 4.46598 4.52490 4.57061 4.62773 4.64334 4.71202 4.75241 4.76583 4.86544 4.91620 5.02101 5.17788 5.26253 5.41605 5.53731 5.80263 5.93854 6.10219 6.43912 6.97895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.023 4.023 3 Si 0.722 3.278 4 C -0.304 4.304 5 C 0.104 3.896 6 N -0.575 5.575 7 C 0.317 3.683 8 N -0.668 5.668 9 C 0.146 3.854 10 H 0.101 0.899 11 C -0.133 4.133 12 C -0.096 4.096 13 H 0.120 0.880 14 S -0.132 6.132 15 C -0.097 4.097 16 C -0.141 4.141 17 C -0.109 4.109 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.121 4.121 21 C -0.107 4.107 22 S 0.118 5.882 23 H 0.386 0.614 24 H 0.135 0.865 25 H -0.276 1.276 26 H -0.264 1.264 27 H 0.179 0.821 28 H 0.425 0.575 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 2.536 0.852 4.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.135 4.135 3 Si 0.624 3.376 4 C -0.427 4.427 5 C -0.046 4.046 6 N -0.301 5.301 7 C -0.053 4.053 8 N -0.308 5.308 9 C 0.036 3.964 10 H 0.119 0.881 11 C -0.174 4.174 12 C -0.225 4.225 13 H 0.138 0.862 14 S 0.115 5.885 15 C -0.210 4.210 16 C -0.164 4.164 17 C -0.128 4.128 18 C -0.154 4.154 19 C -0.128 4.128 20 C -0.145 4.145 21 C -0.147 4.147 22 S 0.367 5.633 23 H 0.235 0.765 24 H 0.153 0.847 25 H -0.202 1.202 26 H -0.190 1.190 27 H 0.196 0.804 28 H 0.264 0.736 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.118 0.882 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.921 2.655 1.671 4.286 hybrid contribution -0.676 0.124 -0.686 0.971 sum 2.244 2.779 0.985 3.706 Atomic orbital electron populations 1.86595 1.18233 1.80261 1.50004 1.24277 0.82991 1.10388 0.95888 0.94391 0.90712 0.73215 0.79235 1.25637 1.14733 0.98130 1.04194 1.21464 0.97133 0.93783 0.92254 1.66472 1.19511 1.34704 1.09378 1.23867 0.95401 0.93635 0.92414 1.43689 1.58681 1.11535 1.16901 1.21705 0.98295 0.83286 0.93081 0.88069 1.23755 0.97332 1.01260 0.95103 1.25131 0.98773 1.01162 0.97400 0.86155 1.85597 0.96624 1.56790 1.49468 1.21905 0.97280 1.01330 1.00440 1.21374 0.97879 0.99309 0.97860 1.21415 0.92285 0.99378 0.99772 1.21552 1.00715 0.96839 0.96253 1.21417 0.95828 0.98063 0.97523 1.21008 0.92625 1.00391 1.00461 1.23185 0.90864 1.05373 0.95283 1.83913 1.54844 1.09857 1.14661 0.76472 0.84719 1.20200 1.18986 0.80426 0.73583 0.88137 0.90703 0.84871 0.83835 0.83857 0.83809 0.85366 0.88205 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.02 12.88 -148.98 -1.92 -2.94 16 2 C -0.02 0.02 2.99 71.24 0.21 0.24 16 3 Si 0.72 -1.42 31.07 68.60 2.13 0.71 16 4 C -0.30 -0.13 5.73 24.58 0.14 0.01 16 5 C 0.10 0.33 11.24 83.54 0.94 1.27 16 6 N -0.57 -2.84 9.83 -202.03 -1.99 -4.83 16 7 C 0.32 0.25 8.09 179.32 1.45 1.70 16 8 N -0.67 2.65 5.42 -327.91 -1.78 0.87 16 9 C 0.15 -0.52 4.44 45.52 0.20 -0.32 16 10 H 0.10 0.00 7.66 -2.39 -0.02 -0.02 16 11 C -0.13 0.40 7.35 31.12 0.23 0.63 16 12 C -0.10 0.38 2.89 31.12 0.09 0.47 16 13 H 0.12 -0.72 6.88 -2.39 -0.02 -0.73 16 14 S -0.13 -0.24 21.72 -56.49 -1.23 -1.46 16 15 C -0.10 -0.36 6.11 22.62 0.14 -0.22 16 16 C -0.14 -0.20 9.32 22.41 0.21 0.01 16 17 C -0.11 -0.01 10.04 22.25 0.22 0.21 16 18 C -0.13 -0.01 10.04 22.30 0.22 0.21 16 19 C -0.11 -0.13 10.04 22.25 0.22 0.09 16 20 C -0.12 -0.44 9.79 22.41 0.22 -0.22 16 21 C -0.11 0.63 7.41 31.12 0.23 0.86 16 22 S 0.12 -0.20 20.59 -56.49 -1.16 -1.36 16 23 H 0.39 -1.27 8.70 -74.06 -0.64 -1.91 16 24 H 0.14 -0.42 7.96 -2.39 -0.02 -0.44 16 25 H -0.28 -1.24 7.11 99.48 0.71 -0.53 16 26 H -0.26 -0.40 7.11 99.48 0.71 0.31 16 27 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 28 H 0.42 -3.63 8.83 -92.71 -0.82 -4.45 16 29 H 0.10 -0.15 8.10 -2.39 -0.02 -0.17 16 30 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.13 -0.27 5.64 -2.91 -0.02 -0.28 16 32 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 33 H 0.14 -0.60 8.06 -2.91 -0.02 -0.63 16 34 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 35 H 0.13 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.11 -0.59 8.10 -2.39 -0.02 -0.61 16 Total: 0.00 -13.57 339.63 -1.52 -15.10 By element: Atomic # 1 Polarization: -10.71 SS G_CDS: -0.31 Total: -11.03 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 4.73 Total: 4.95 kcal Atomic # 7 Polarization: -0.19 SS G_CDS: -3.76 Total: -3.95 kcal Atomic # 8 Polarization: -1.02 SS G_CDS: -1.92 Total: -2.94 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 2.13 Total: 0.71 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.39 Total: -2.83 kcal Total: -13.57 -1.52 -15.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12525226_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.625 kcal (2) G-P(sol) polarization free energy of solvation -13.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds