Wall clock time and date at job start Mon Mar 8 2021 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33321 * 125.95532 * 2 1 4 4 C 1.50711 * 122.70760 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47055 * 330.00281 * 4 3 2 6 6 Si 1.86294 * 109.47044 * 210.00389 * 4 3 2 7 7 N 1.32117 * 114.58502 * 179.79001 * 3 2 1 8 8 C 1.29691 * 116.86203 * 0.43390 * 7 3 2 9 9 N 1.38615 * 124.94858 * 179.84348 * 8 7 3 10 10 C 1.46498 * 119.99809 * 179.72535 * 9 8 7 11 11 H 1.08995 * 112.85146 * 336.19828 * 10 9 8 12 12 C 1.53780 * 113.61225 * 107.50665 * 10 9 8 13 13 C 1.53781 * 87.08229 * 89.11342 * 12 10 9 14 14 H 1.09001 * 113.61213 * 270.88025 * 13 12 10 15 15 S 1.81401 * 113.61377 * 139.97953 * 13 12 10 16 16 C 1.76199 * 103.00096 * 87.50170 * 15 13 12 17 17 C 1.38978 * 120.08124 * 359.72633 * 16 15 13 18 18 C 1.38075 * 119.92325 * 179.72248 * 17 16 15 19 19 C 1.38308 * 120.07970 * 0.52813 * 18 17 16 20 20 C 1.38307 * 120.15794 * 359.77041 * 19 18 17 21 21 C 1.38085 * 120.07951 * 359.95087 * 20 19 18 22 22 C 1.53781 * 113.61113 * 205.00154 * 10 9 8 23 23 S 1.70958 * 110.10181 * 359.58285 * 8 7 3 24 24 H 1.09005 * 109.47486 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47644 * 300.00420 * 1 2 3 26 26 H 1.08998 * 109.47056 * 60.00557 * 1 2 3 27 27 H 1.08994 * 109.46519 * 90.00417 * 4 3 2 28 28 H 0.96702 * 114.00001 * 300.00014 * 5 4 3 29 29 H 1.48502 * 110.00263 * 58.68086 * 6 4 3 30 30 H 1.48499 * 109.99899 * 180.02562 * 6 4 3 31 31 H 0.97000 * 119.99444 * 359.72845 * 9 8 7 32 32 H 1.09002 * 113.61104 * 203.66330 * 12 10 9 33 33 H 1.08998 * 113.61615 * 334.56022 * 12 10 9 34 34 H 1.08005 * 120.03517 * 359.97438 * 17 16 15 35 35 H 1.07998 * 119.96816 * 180.27620 * 18 17 16 36 36 H 1.07997 * 119.92359 * 179.74442 * 19 18 17 37 37 H 1.07996 * 119.95735 * 179.97438 * 20 19 18 38 38 H 1.07993 * 120.03803 * 179.97438 * 21 20 19 39 39 H 1.08994 * 113.61749 * 25.43002 * 22 10 9 40 40 H 1.08996 * 113.61554 * 156.25259 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4810 2.5023 -0.6726 6 14 2.9319 3.6151 -0.8779 7 7 3.5850 0.8187 0.0044 8 6 3.9314 -0.4310 -0.0006 9 7 5.2384 -0.8927 -0.0004 10 6 5.5065 -2.3330 -0.0003 11 1 4.6803 -2.9173 0.4048 12 6 6.0362 -2.8610 -1.3440 13 6 7.4477 -2.5442 -0.8224 14 1 7.7790 -1.5304 -1.0472 15 16 8.6813 -3.8022 -1.2544 16 6 9.2466 -3.2757 -2.8380 17 6 8.7158 -2.1318 -3.4222 18 6 9.1653 -1.7190 -4.6607 19 6 10.1348 -2.4484 -5.3248 20 6 10.6609 -3.5907 -4.7493 21 6 10.2202 -4.0063 -3.5084 22 6 6.8745 -2.7049 0.5955 23 16 2.5413 -1.4261 -0.0004 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.6097 2.8211 1.0283 28 1 0.5229 2.2127 -1.5942 29 1 3.1447 3.1463 -2.2708 30 1 2.4030 5.0026 -0.8836 31 1 5.9755 -0.2621 -0.0001 32 1 5.8557 -3.9250 -1.4967 33 1 5.7401 -2.2534 -2.1992 34 1 7.9555 -1.5642 -2.9062 35 1 8.7565 -0.8277 -5.1134 36 1 10.4815 -2.1255 -6.2953 37 1 11.4174 -4.1580 -5.2709 38 1 10.6312 -4.8986 -3.0598 39 1 7.2553 -1.9713 1.3060 40 1 6.9228 -3.7258 0.9743 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12525226_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:20 Heat of formation + Delta-G solvation = 77.418544 kcal Electronic energy + Delta-G solvation = -23095.139672 eV Core-core repulsion = 19709.422954 eV Total energy + Delta-G solvation = -3385.716718 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21826 -40.50082 -39.86662 -37.84968 -35.28605 -32.53764 -32.07028 -31.93027 -29.34582 -27.15860 -26.69862 -25.55086 -24.40058 -23.73308 -23.48903 -21.37963 -20.64353 -19.04076 -18.69336 -18.11045 -17.93284 -17.21966 -16.80709 -16.61640 -16.45131 -15.85238 -15.72941 -15.58297 -15.39901 -14.97675 -14.58121 -14.39036 -14.16581 -14.05560 -13.84466 -13.82114 -13.69436 -13.48482 -13.29910 -12.78412 -12.44406 -12.31422 -12.23582 -12.07680 -11.90167 -11.79183 -11.19439 -11.05147 -10.74595 -10.64306 -10.52363 -10.03670 -9.99355 -8.70326 -8.41147 -4.69344 -0.02444 0.13236 0.20615 0.36186 0.45390 0.74295 1.29102 1.35911 1.71608 1.80565 1.92668 2.09180 2.71419 2.99891 3.03043 3.25978 3.34257 3.49111 3.59330 3.83964 3.92647 4.02774 4.12422 4.14374 4.30787 4.35025 4.37781 4.40274 4.49107 4.51227 4.57412 4.63846 4.70424 4.74733 4.76842 4.86286 4.97422 5.04907 5.24245 5.25925 5.38528 5.51695 5.51824 5.89251 6.15795 6.34728 6.89946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.240 4.240 3 C 0.066 3.934 4 C -0.041 4.041 5 O -0.525 6.525 6 Si 0.721 3.279 7 N -0.535 5.535 8 C 0.319 3.681 9 N -0.678 5.678 10 C 0.131 3.869 11 H 0.105 0.895 12 C -0.142 4.142 13 C -0.107 4.107 14 H 0.113 0.887 15 S -0.101 6.101 16 C -0.084 4.084 17 C -0.132 4.132 18 C -0.101 4.101 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.102 4.102 22 C -0.112 4.112 23 S 0.106 5.894 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.375 0.625 29 H -0.268 1.268 30 H -0.260 1.260 31 H 0.414 0.586 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -2.230 0.142 2.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.363 4.363 3 C -0.064 4.064 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.621 3.379 7 N -0.262 5.262 8 C -0.052 4.052 9 N -0.318 5.318 10 C 0.023 3.977 11 H 0.123 0.877 12 C -0.183 4.183 13 C -0.236 4.236 14 H 0.131 0.869 15 S 0.145 5.855 16 C -0.196 4.196 17 C -0.155 4.155 18 C -0.121 4.121 19 C -0.145 4.145 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.151 4.151 23 S 0.355 5.645 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.142 0.858 28 H 0.223 0.777 29 H -0.193 1.193 30 H -0.186 1.186 31 H 0.252 0.748 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.110 0.890 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.867 -3.308 0.828 3.888 hybrid contribution -0.895 1.541 -1.493 2.325 sum 0.972 -1.767 -0.665 2.123 Atomic orbital electron populations 1.20152 0.86402 1.01736 1.03676 1.25170 1.01384 0.92873 1.16834 1.20069 0.86779 0.97176 1.02386 1.24464 0.91863 0.95331 1.03723 1.86627 1.28583 1.89045 1.28823 0.93650 0.86196 0.76486 0.81552 1.65719 1.17091 1.16427 1.26923 1.23211 0.91584 0.91532 0.98857 1.43532 1.01966 1.05960 1.80365 1.21887 0.98285 0.80155 0.97378 0.87740 1.23902 0.92917 1.03446 0.98039 1.25043 0.96234 1.01293 1.01038 0.86880 1.85529 1.47656 1.35777 1.16491 1.21732 1.00705 0.98817 0.98388 1.21167 1.01222 0.96374 0.96774 1.21108 0.96835 0.99605 0.94523 1.21254 0.97309 0.95593 1.00302 1.21153 0.99443 0.96593 0.94846 1.20807 0.96705 0.99801 0.95231 1.23163 0.93240 1.04401 0.94339 1.84003 0.96322 1.10382 1.73800 0.92237 0.90486 0.90179 0.85813 0.77673 1.19254 1.18564 0.74770 0.87199 0.89926 0.86002 0.85676 0.85632 0.85332 0.85449 0.88959 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.00 8.91 36.00 0.32 0.32 16 2 C -0.24 -0.34 6.50 -36.03 -0.23 -0.57 16 3 C 0.07 0.13 5.91 -84.18 -0.50 -0.37 16 4 C -0.04 -0.04 2.94 36.01 0.11 0.06 16 5 O -0.53 -0.50 10.17 -35.23 -0.36 -0.86 16 6 Si 0.72 0.78 32.09 -169.99 -5.45 -4.67 16 7 N -0.54 -1.13 8.95 -11.36 -0.10 -1.24 16 8 C 0.32 0.24 8.24 -87.67 -0.72 -0.48 16 9 N -0.68 1.16 5.42 -55.00 -0.30 0.87 16 10 C 0.13 -0.40 4.31 -67.12 -0.29 -0.69 16 11 H 0.10 -0.34 7.06 -51.93 -0.37 -0.70 16 12 C -0.14 0.39 7.35 -25.92 -0.19 0.20 16 13 C -0.11 0.26 2.89 -25.92 -0.07 0.19 16 14 H 0.11 -0.29 6.88 -51.93 -0.36 -0.65 16 15 S -0.10 0.00 21.72 -107.50 -2.33 -2.34 16 16 C -0.08 -0.11 6.11 -39.04 -0.24 -0.35 16 17 C -0.13 -0.09 9.32 -39.37 -0.37 -0.46 16 18 C -0.10 -0.04 10.04 -39.62 -0.40 -0.44 16 19 C -0.12 -0.04 10.04 -39.53 -0.40 -0.43 16 20 C -0.10 -0.04 10.04 -39.61 -0.40 -0.44 16 21 C -0.10 -0.12 9.79 -39.37 -0.39 -0.50 16 22 C -0.11 0.40 7.41 -25.92 -0.19 0.21 16 23 S 0.11 0.03 21.69 -107.50 -2.33 -2.30 16 24 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 25 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.08 -0.05 6.39 -51.93 -0.33 -0.39 16 27 H 0.12 0.04 7.96 -51.93 -0.41 -0.37 16 28 H 0.38 -0.54 8.13 45.56 0.37 -0.17 16 29 H -0.27 -1.02 7.11 56.52 0.40 -0.62 16 30 H -0.26 -0.89 7.11 56.52 0.40 -0.48 16 31 H 0.41 -1.04 8.83 -40.82 -0.36 -1.40 16 32 H 0.11 -0.31 8.10 -51.93 -0.42 -0.73 16 33 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 34 H 0.12 -0.09 5.64 -52.48 -0.30 -0.38 16 35 H 0.13 -0.16 8.06 -52.49 -0.42 -0.58 16 36 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 37 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 38 H 0.13 0.02 8.06 -52.49 -0.42 -0.41 16 39 H 0.09 -0.36 8.14 -51.93 -0.42 -0.78 16 40 H 0.11 -0.43 8.10 -51.93 -0.42 -0.86 16 LS Contribution 355.95 15.07 5.36 5.36 Total: 0.00 -5.48 355.95 -14.65 -20.13 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: -5.18 Total: -11.19 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.96 Total: -3.76 kcal Atomic # 7 Polarization: 0.03 SS G_CDS: -0.40 Total: -0.37 kcal Atomic # 8 Polarization: -0.50 SS G_CDS: -0.36 Total: -0.86 kcal Atomic # 14 Polarization: 0.78 SS G_CDS: -5.45 Total: -4.67 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -4.67 Total: -4.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -5.48 -14.65 -20.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12525226_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.545 kcal (2) G-P(sol) polarization free energy of solvation -5.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds