Wall clock time and date at job start Mon Mar 8 2021 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86296 * 109.47327 * 2 1 4 4 C 1.50692 * 109.46845 * 120.00201 * 2 1 3 5 5 C 1.38024 * 120.33448 * 245.02392 * 4 2 1 6 6 N 1.31974 * 120.85907 * 179.70513 * 5 4 2 7 7 C 1.32400 * 121.61914 * 0.56008 * 6 5 4 8 8 N 1.39007 * 119.70633 * 179.71744 * 7 6 5 9 9 C 1.46496 * 119.99861 * 179.72685 * 8 7 6 10 10 H 1.09001 * 112.85032 * 336.19471 * 9 8 7 11 11 C 1.53782 * 113.68971 * 107.46000 * 9 8 7 12 12 C 1.53962 * 87.11063 * 89.19569 * 11 9 8 13 13 H 1.08993 * 113.61598 * 270.84305 * 12 11 9 14 14 S 1.81404 * 113.66432 * 139.88959 * 12 11 9 15 15 O 1.42106 * 110.53824 * 194.17899 * 14 12 11 16 16 O 1.42104 * 110.54409 * 330.92322 * 14 12 11 17 17 C 1.76194 * 104.44896 * 82.55200 * 14 12 11 18 18 C 1.38234 * 120.00093 * 269.72131 * 17 14 12 19 19 C 1.38228 * 119.99927 * 179.78794 * 18 17 14 20 20 C 1.38240 * 120.00466 * 0.46744 * 19 18 17 21 21 C 1.38236 * 119.99456 * 359.76728 * 20 19 18 22 22 C 1.38233 * 120.00121 * 0.02562 * 21 20 19 23 23 C 1.53781 * 113.61266 * 204.99574 * 9 8 7 24 24 C 1.39145 * 120.58972 * 359.43591 * 7 6 5 25 25 C 1.38295 * 119.09438 * 0.27743 * 24 7 6 26 26 H 0.96698 * 114.00176 * 300.00797 * 1 2 3 27 27 H 1.08997 * 109.46989 * 239.99956 * 2 1 3 28 28 H 1.48497 * 110.00041 * 178.68076 * 3 2 1 29 29 H 1.48508 * 110.00177 * 300.00178 * 3 2 1 30 30 H 1.07995 * 119.57010 * 359.97181 * 5 4 2 31 31 H 0.97001 * 119.99451 * 359.72021 * 8 7 6 32 32 H 1.08997 * 113.61668 * 203.67120 * 11 9 8 33 33 H 1.08998 * 113.61674 * 334.49629 * 11 9 8 34 34 H 1.07999 * 119.99791 * 0.02562 * 18 17 14 35 35 H 1.08004 * 120.00014 * 180.25475 * 19 18 17 36 36 H 1.07997 * 120.00745 * 179.78783 * 20 19 18 37 37 H 1.07998 * 120.00026 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.00091 * 179.97438 * 22 21 20 39 39 H 1.09002 * 113.61445 * 25.35018 * 23 9 8 40 40 H 1.09002 * 113.61408 * 156.16749 * 23 9 8 41 41 H 1.07997 * 120.44961 * 180.29841 * 24 7 6 42 42 H 1.07999 * 120.74866 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6379 -0.0201 2.1944 6 7 3.0775 -0.6306 3.2786 7 6 2.8703 -1.9227 3.4799 8 7 3.3563 -2.5267 4.6337 9 6 3.1255 -3.9547 4.8659 10 1 2.2577 -4.3361 4.3278 11 6 4.3853 -4.8199 4.6953 12 6 4.6644 -4.5700 6.1886 13 1 5.2590 -3.6764 6.3781 14 16 5.2847 -6.0305 7.0678 15 8 5.2113 -5.8348 8.4734 16 8 4.7925 -7.2205 6.4671 17 6 7.0122 -6.0513 6.7215 18 6 7.4877 -6.7347 5.6181 19 6 8.8425 -6.7474 5.3440 20 6 9.7229 -6.0846 6.1787 21 6 9.2478 -5.4052 7.2848 22 6 7.8925 -5.3890 7.5566 23 6 3.1513 -4.3492 6.3520 24 6 2.1653 -2.6802 2.5497 25 6 1.6874 -2.0664 1.4062 26 1 -0.3933 0.4418 0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 3.5347 1.7702 0.0321 29 1 1.5616 2.4679 -1.2085 30 1 2.8297 1.0344 2.0616 31 1 3.8483 -2.0027 5.2851 32 1 4.1705 -5.8625 4.4612 33 1 5.1295 -4.3814 4.0305 34 1 6.8004 -7.2556 4.9680 35 1 9.2137 -7.2779 4.4795 36 1 10.7817 -6.0973 5.9665 37 1 9.9356 -4.8878 7.9372 38 1 7.5214 -4.8585 8.4211 39 1 2.8998 -3.5300 7.0256 40 1 2.5978 -5.2624 6.5710 41 1 1.9935 -3.7329 2.7185 42 1 1.1373 -2.6289 0.6664 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12550012_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:25:10 Heat of formation + Delta-G solvation = 13.141233 kcal Electronic energy + Delta-G solvation = -27204.496684 eV Core-core repulsion = 23245.013682 eV Total energy + Delta-G solvation = -3959.483003 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.66055 -40.40693 -40.16394 -38.16583 -37.89652 -36.98901 -35.35645 -33.44817 -32.42660 -32.12390 -31.28206 -27.48022 -27.27784 -25.98795 -24.80839 -24.25693 -23.83524 -22.85377 -21.03735 -20.05367 -19.46414 -18.83721 -18.50116 -17.88593 -17.55808 -17.10232 -17.00964 -16.57510 -16.49580 -16.08981 -15.78091 -15.71765 -15.61625 -15.39930 -15.00588 -14.63454 -14.30029 -14.26546 -14.14640 -14.13154 -14.01862 -13.89100 -13.43418 -13.32809 -13.13312 -13.02954 -12.51664 -12.37745 -12.36377 -12.18830 -12.03570 -11.84606 -11.42678 -11.20655 -10.80601 -10.48334 -10.45128 -10.43280 -10.14773 -8.84976 -5.06493 -1.05297 -0.26012 0.15921 0.19277 0.34627 1.27396 1.60492 1.70763 1.83961 1.95880 2.32336 2.56928 2.74214 2.76214 2.93214 3.27572 3.29301 3.43969 3.50086 3.53907 3.71573 3.73890 3.79948 3.88192 3.90152 3.97354 4.10390 4.16633 4.21722 4.25132 4.28940 4.35693 4.42955 4.48346 4.56642 4.57546 4.64268 4.68678 4.81238 4.94017 4.96212 5.13152 5.24066 5.26701 5.42038 5.72135 5.86492 6.38275 6.55844 7.05421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.053 4.053 3 Si 0.680 3.320 4 C -0.233 4.233 5 C 0.157 3.843 6 N -0.538 5.538 7 C 0.408 3.592 8 N -0.705 5.705 9 C 0.144 3.856 10 H 0.112 0.888 11 C -0.130 4.130 12 C -0.601 4.601 13 H 0.155 0.845 14 S 2.501 3.499 15 O -0.933 6.933 16 O -0.930 6.930 17 C -0.659 4.659 18 C -0.023 4.023 19 C -0.140 4.140 20 C -0.065 4.065 21 C -0.140 4.140 22 C -0.026 4.026 23 C -0.118 4.118 24 C -0.237 4.237 25 C -0.005 4.005 26 H 0.379 0.621 27 H 0.112 0.888 28 H -0.256 1.256 29 H -0.253 1.253 30 H 0.156 0.844 31 H 0.408 0.592 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 1.919 -0.726 2.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.165 4.165 3 Si 0.582 3.418 4 C -0.238 4.238 5 C 0.000 4.000 6 N -0.254 5.254 7 C 0.173 3.827 8 N -0.337 5.337 9 C 0.036 3.964 10 H 0.129 0.871 11 C -0.170 4.170 12 C -0.711 4.711 13 H 0.173 0.827 14 S 2.681 3.319 15 O -0.931 6.931 16 O -0.928 6.928 17 C -0.746 4.746 18 C -0.042 4.042 19 C -0.159 4.159 20 C -0.083 4.083 21 C -0.159 4.159 22 C -0.045 4.045 23 C -0.157 4.157 24 C -0.262 4.262 25 C -0.031 4.031 26 H 0.226 0.774 27 H 0.130 0.870 28 H -0.181 1.181 29 H -0.178 1.178 30 H 0.172 0.828 31 H 0.244 0.756 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.154 0.846 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.315 1.893 -0.550 2.370 hybrid contribution 0.780 -0.378 -0.828 1.199 sum 2.095 1.514 -1.378 2.930 Atomic orbital electron populations 1.86500 1.17267 1.81668 1.49278 1.24787 0.85068 1.09687 0.96916 0.94909 0.81157 0.78088 0.87651 1.21024 1.06612 0.96087 1.00041 1.22194 0.91495 0.98762 0.87586 1.67113 1.25719 1.08944 1.23654 1.18328 0.89283 0.88459 0.86590 1.44073 1.60611 1.07948 1.21110 1.21662 0.98091 0.80572 0.96076 0.87055 1.23392 0.99854 1.02847 0.90946 1.31784 1.07713 1.21016 1.10570 0.82694 1.05377 0.74506 0.76653 0.75332 1.93590 1.85715 1.86532 1.27218 1.93586 1.79122 1.41232 1.78814 1.30510 1.24932 1.12603 1.06519 1.20977 0.96665 0.92982 0.93563 1.21369 0.93389 1.00569 1.00589 1.21579 1.00349 0.93145 0.93194 1.21366 0.95669 1.00591 0.98240 1.21001 0.93510 0.93656 0.96304 1.23083 0.89920 1.04529 0.98173 1.21526 1.06358 1.01595 0.96712 1.21221 0.93046 0.93403 0.95411 0.77406 0.87046 1.18088 1.17762 0.82757 0.75580 0.86540 0.88793 0.84079 0.84830 0.85019 0.84811 0.84100 0.88117 0.87143 0.84588 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.14 12.84 -35.23 -0.45 -0.31 16 2 C -0.05 0.04 2.82 36.00 0.10 0.14 16 3 Si 0.68 -0.95 29.83 -169.99 -5.07 -6.02 16 4 C -0.23 0.04 5.36 -104.46 -0.56 -0.52 16 5 C 0.16 0.04 9.84 -17.57 -0.17 -0.13 16 6 N -0.54 -0.88 10.39 -12.43 -0.13 -1.01 16 7 C 0.41 0.15 7.65 -155.01 -1.19 -1.03 16 8 N -0.71 1.26 5.44 -53.14 -0.29 0.97 16 9 C 0.14 -0.49 4.11 -67.12 -0.28 -0.77 16 10 H 0.11 -0.49 6.10 -51.93 -0.32 -0.80 16 11 C -0.13 0.47 7.45 -25.82 -0.19 0.28 16 12 C -0.60 2.00 4.21 -25.82 -0.11 1.89 16 13 H 0.16 -0.76 8.14 -51.93 -0.42 -1.19 16 14 S 2.50 0.22 5.13 -107.50 -0.55 -0.33 16 15 O -0.93 -3.21 17.13 -57.54 -0.99 -4.19 16 16 O -0.93 -2.33 16.30 -57.54 -0.94 -3.27 16 17 C -0.66 -0.28 5.66 -39.58 -0.22 -0.50 16 18 C -0.02 0.00 9.47 -39.59 -0.37 -0.38 16 19 C -0.14 0.09 10.05 -39.58 -0.40 -0.31 16 20 C -0.06 0.06 10.05 -39.58 -0.40 -0.34 16 21 C -0.14 0.07 10.05 -39.58 -0.40 -0.33 16 22 C -0.03 -0.01 9.47 -39.58 -0.37 -0.38 16 23 C -0.12 0.44 7.41 -25.92 -0.19 0.24 16 24 C -0.24 0.13 9.29 -39.22 -0.36 -0.23 16 25 C -0.01 0.00 9.84 -39.32 -0.39 -0.39 16 26 H 0.38 -1.49 8.70 45.56 0.40 -1.10 16 27 H 0.11 -0.04 7.96 -51.93 -0.41 -0.46 16 28 H -0.26 -0.27 7.11 56.52 0.40 0.14 16 29 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 30 H 0.16 -0.28 4.91 -52.49 -0.26 -0.53 16 31 H 0.41 -0.93 8.83 -40.82 -0.36 -1.29 16 32 H 0.12 -0.48 7.43 -51.93 -0.39 -0.87 16 33 H 0.09 -0.32 8.14 -51.93 -0.42 -0.75 16 34 H 0.14 -0.21 7.57 -52.49 -0.40 -0.61 16 35 H 0.13 -0.36 8.06 -52.48 -0.42 -0.78 16 36 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 37 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 38 H 0.14 -0.14 7.57 -52.48 -0.40 -0.54 16 39 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 40 H 0.11 -0.50 8.10 -51.93 -0.42 -0.92 16 41 H 0.14 -0.35 6.03 -52.49 -0.32 -0.67 16 42 H 0.14 -0.18 8.06 -52.49 -0.42 -0.60 16 LS Contribution 363.84 15.07 5.48 5.48 Total: 0.00 -11.46 363.84 -13.46 -24.92 By element: Atomic # 1 Polarization: -8.46 SS G_CDS: -5.03 Total: -13.49 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -5.50 Total: -2.76 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: -0.42 Total: -0.03 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -2.38 Total: -7.77 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: -5.07 Total: -6.02 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -0.55 Total: -0.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -11.46 -13.46 -24.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12550012_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.061 kcal (2) G-P(sol) polarization free energy of solvation -11.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds