Wall clock time and date at job start Mon Mar 8 2021 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86296 * 109.47327 * 2 1 4 4 C 1.50692 * 109.46845 * 120.00201 * 2 1 3 5 5 C 1.38024 * 120.33448 * 245.02392 * 4 2 1 6 6 N 1.31974 * 120.85907 * 179.70513 * 5 4 2 7 7 C 1.32400 * 121.61914 * 0.56008 * 6 5 4 8 8 N 1.39007 * 119.70633 * 179.71744 * 7 6 5 9 9 C 1.46496 * 119.99861 * 179.72685 * 8 7 6 10 10 H 1.09001 * 112.85032 * 336.19471 * 9 8 7 11 11 C 1.53782 * 113.68971 * 107.46000 * 9 8 7 12 12 C 1.53962 * 87.11063 * 89.19569 * 11 9 8 13 13 H 1.08993 * 113.61598 * 270.84305 * 12 11 9 14 14 S 1.81404 * 113.66432 * 139.88959 * 12 11 9 15 15 O 1.42106 * 110.53824 * 194.17899 * 14 12 11 16 16 O 1.42104 * 110.54409 * 330.92322 * 14 12 11 17 17 C 1.76194 * 104.44896 * 82.55200 * 14 12 11 18 18 C 1.38234 * 120.00093 * 269.72131 * 17 14 12 19 19 C 1.38228 * 119.99927 * 179.78794 * 18 17 14 20 20 C 1.38240 * 120.00466 * 0.46744 * 19 18 17 21 21 C 1.38236 * 119.99456 * 359.76728 * 20 19 18 22 22 C 1.38233 * 120.00121 * 0.02562 * 21 20 19 23 23 C 1.53781 * 113.61266 * 204.99574 * 9 8 7 24 24 C 1.39145 * 120.58972 * 359.43591 * 7 6 5 25 25 C 1.38295 * 119.09438 * 0.27743 * 24 7 6 26 26 H 0.96698 * 114.00176 * 300.00797 * 1 2 3 27 27 H 1.08997 * 109.46989 * 239.99956 * 2 1 3 28 28 H 1.48497 * 110.00041 * 178.68076 * 3 2 1 29 29 H 1.48508 * 110.00177 * 300.00178 * 3 2 1 30 30 H 1.07995 * 119.57010 * 359.97181 * 5 4 2 31 31 H 0.97001 * 119.99451 * 359.72021 * 8 7 6 32 32 H 1.08997 * 113.61668 * 203.67120 * 11 9 8 33 33 H 1.08998 * 113.61674 * 334.49629 * 11 9 8 34 34 H 1.07999 * 119.99791 * 0.02562 * 18 17 14 35 35 H 1.08004 * 120.00014 * 180.25475 * 19 18 17 36 36 H 1.07997 * 120.00745 * 179.78783 * 20 19 18 37 37 H 1.07998 * 120.00026 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.00091 * 179.97438 * 22 21 20 39 39 H 1.09002 * 113.61445 * 25.35018 * 23 9 8 40 40 H 1.09002 * 113.61408 * 156.16749 * 23 9 8 41 41 H 1.07997 * 120.44961 * 180.29841 * 24 7 6 42 42 H 1.07999 * 120.74866 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6379 -0.0201 2.1944 6 7 3.0775 -0.6306 3.2786 7 6 2.8703 -1.9227 3.4799 8 7 3.3563 -2.5267 4.6337 9 6 3.1255 -3.9547 4.8659 10 1 2.2577 -4.3361 4.3278 11 6 4.3853 -4.8199 4.6953 12 6 4.6644 -4.5700 6.1886 13 1 5.2590 -3.6764 6.3781 14 16 5.2847 -6.0305 7.0678 15 8 5.2113 -5.8348 8.4734 16 8 4.7925 -7.2205 6.4671 17 6 7.0122 -6.0513 6.7215 18 6 7.4877 -6.7347 5.6181 19 6 8.8425 -6.7474 5.3440 20 6 9.7229 -6.0846 6.1787 21 6 9.2478 -5.4052 7.2848 22 6 7.8925 -5.3890 7.5566 23 6 3.1513 -4.3492 6.3520 24 6 2.1653 -2.6802 2.5497 25 6 1.6874 -2.0664 1.4062 26 1 -0.3933 0.4418 0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 3.5347 1.7702 0.0321 29 1 1.5616 2.4679 -1.2085 30 1 2.8297 1.0344 2.0616 31 1 3.8483 -2.0027 5.2851 32 1 4.1705 -5.8625 4.4612 33 1 5.1295 -4.3814 4.0305 34 1 6.8004 -7.2556 4.9680 35 1 9.2137 -7.2779 4.4795 36 1 10.7817 -6.0973 5.9665 37 1 9.9356 -4.8878 7.9372 38 1 7.5214 -4.8585 8.4211 39 1 2.8998 -3.5300 7.0256 40 1 2.5978 -5.2624 6.5710 41 1 1.9935 -3.7329 2.7185 42 1 1.1373 -2.6289 0.6664 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12550012_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:25:09 Heat of formation + Delta-G solvation = 10.693666 kcal Electronic energy + Delta-G solvation = -27204.602819 eV Core-core repulsion = 23245.013682 eV Total energy + Delta-G solvation = -3959.589137 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55234 -40.22574 -40.07432 -38.25294 -37.83099 -37.08738 -35.22928 -33.38756 -32.34563 -32.04116 -31.18678 -27.33184 -27.00028 -25.87877 -24.73571 -24.18221 -23.75535 -22.76960 -20.87379 -19.96980 -19.36272 -18.78231 -18.42427 -17.80459 -17.42435 -17.01708 -16.97843 -16.51184 -16.34855 -16.01426 -15.72898 -15.62835 -15.53236 -15.29480 -14.87069 -14.53572 -14.31389 -14.17158 -14.03921 -14.01761 -13.81108 -13.72573 -13.36308 -13.27326 -13.25522 -13.13603 -12.40810 -12.26169 -12.21914 -12.10716 -11.96599 -11.78247 -11.29350 -11.07876 -10.74912 -10.43056 -10.38624 -10.37045 -10.08702 -8.73442 -4.98870 -1.00449 -0.21289 0.22357 0.25479 0.40183 1.34632 1.64309 1.75989 1.98017 2.00526 2.40219 2.72105 2.82105 2.88333 3.08940 3.36333 3.51695 3.57559 3.63832 3.78242 3.80154 3.84642 3.90960 4.01344 4.05906 4.08797 4.30952 4.34231 4.39311 4.42229 4.49807 4.55484 4.57513 4.67179 4.72307 4.76833 4.85815 4.90423 4.91585 5.03596 5.04162 5.22988 5.33531 5.35196 5.53100 5.82149 6.01125 6.51778 6.80958 7.13134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.053 4.053 3 Si 0.763 3.237 4 C -0.235 4.235 5 C 0.146 3.854 6 N -0.563 5.563 7 C 0.397 3.603 8 N -0.701 5.701 9 C 0.144 3.856 10 H 0.126 0.874 11 C -0.129 4.129 12 C -0.578 4.578 13 H 0.174 0.826 14 S 2.503 3.497 15 O -0.975 6.975 16 O -0.961 6.961 17 C -0.667 4.667 18 C -0.039 4.039 19 C -0.149 4.149 20 C -0.072 4.072 21 C -0.149 4.149 22 C -0.045 4.045 23 C -0.122 4.122 24 C -0.239 4.239 25 C -0.014 4.014 26 H 0.394 0.606 27 H 0.107 0.893 28 H -0.288 1.288 29 H -0.298 1.298 30 H 0.168 0.832 31 H 0.409 0.591 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.156 0.844 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 2.037 -1.053 2.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.670 3.330 4 C -0.241 4.241 5 C -0.010 4.010 6 N -0.280 5.280 7 C 0.162 3.838 8 N -0.333 5.333 9 C 0.036 3.964 10 H 0.143 0.857 11 C -0.170 4.170 12 C -0.691 4.691 13 H 0.192 0.808 14 S 2.688 3.312 15 O -0.972 6.972 16 O -0.958 6.958 17 C -0.755 4.755 18 C -0.058 4.058 19 C -0.167 4.167 20 C -0.090 4.090 21 C -0.167 4.167 22 C -0.064 4.064 23 C -0.161 4.161 24 C -0.264 4.264 25 C -0.039 4.039 26 H 0.244 0.756 27 H 0.125 0.875 28 H -0.215 1.215 29 H -0.226 1.226 30 H 0.185 0.815 31 H 0.246 0.754 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.173 0.827 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.314 1.962 -0.821 2.500 hybrid contribution 0.795 -0.387 -0.777 1.177 sum 2.109 1.575 -1.598 3.079 Atomic orbital electron populations 1.86462 1.17382 1.82095 1.50490 1.24822 0.85062 1.09974 0.96609 0.93916 0.77906 0.75943 0.85232 1.21053 1.06675 0.96323 1.00021 1.22430 0.91586 0.99484 0.87535 1.67120 1.26677 1.09809 1.24387 1.18568 0.89545 0.88371 0.87347 1.44145 1.60182 1.08469 1.20522 1.21745 0.98572 0.79748 0.96307 0.85681 1.23475 0.99859 1.03335 0.90285 1.31663 1.08216 1.19016 1.10178 0.80842 1.05118 0.74239 0.77252 0.74571 1.93531 1.86249 1.87348 1.30096 1.93536 1.79585 1.43769 1.78957 1.30499 1.24929 1.13130 1.06917 1.21225 0.97435 0.93288 0.93821 1.21694 0.93221 1.00538 1.01271 1.21918 1.01547 0.92629 0.92868 1.21674 0.95679 1.00660 0.98730 1.21223 0.94155 0.94283 0.96729 1.23247 0.89235 1.05350 0.98318 1.21744 1.05820 1.02504 0.96304 1.21425 0.93154 0.93534 0.95819 0.75604 0.87538 1.21487 1.22605 0.81533 0.75408 0.85836 0.88534 0.83195 0.82963 0.82862 0.83083 0.83651 0.87239 0.86226 0.82679 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.51 12.84 -148.98 -1.91 -1.40 16 2 C -0.05 0.08 2.82 71.23 0.20 0.28 16 3 Si 0.76 -1.87 29.83 68.60 2.05 0.18 16 4 C -0.24 0.15 5.36 -19.76 -0.11 0.04 16 5 C 0.15 0.07 9.84 84.62 0.83 0.90 16 6 N -0.56 -1.73 10.39 -193.25 -2.01 -3.73 16 7 C 0.40 0.03 7.65 133.06 1.02 1.05 16 8 N -0.70 3.19 5.44 -322.04 -1.75 1.44 16 9 C 0.14 -1.17 4.11 45.52 0.19 -0.98 16 10 H 0.13 -1.32 6.10 -2.39 -0.01 -1.34 16 11 C -0.13 1.05 7.45 31.18 0.23 1.28 16 12 C -0.58 4.08 4.21 31.18 0.13 4.21 16 13 H 0.17 -1.85 8.14 -2.39 -0.02 -1.87 16 14 S 2.50 2.84 5.13 -56.49 -0.29 2.55 16 15 O -0.98 -8.27 17.13 -127.65 -2.19 -10.45 16 16 O -0.96 -5.89 16.30 -127.65 -2.08 -7.97 16 17 C -0.67 -1.14 5.66 22.27 0.13 -1.01 16 18 C -0.04 -0.02 9.47 22.27 0.21 0.19 16 19 C -0.15 0.21 10.05 22.27 0.22 0.44 16 20 C -0.07 0.16 10.05 22.27 0.22 0.38 16 21 C -0.15 0.14 10.05 22.27 0.22 0.37 16 22 C -0.05 -0.06 9.47 22.27 0.21 0.15 16 23 C -0.12 1.02 7.41 31.12 0.23 1.25 16 24 C -0.24 0.49 9.29 22.50 0.21 0.70 16 25 C -0.01 0.02 9.84 22.44 0.22 0.24 16 26 H 0.39 -3.37 8.70 -74.06 -0.64 -4.01 16 27 H 0.11 -0.07 7.96 -2.39 -0.02 -0.09 16 28 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 29 H -0.30 -1.51 7.11 99.48 0.71 -0.81 16 30 H 0.17 -0.61 4.91 -2.91 -0.01 -0.62 16 31 H 0.41 -2.20 8.83 -92.71 -0.82 -3.01 16 32 H 0.12 -1.12 7.43 -2.39 -0.02 -1.14 16 33 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.15 -0.36 7.57 -2.91 -0.02 -0.38 16 35 H 0.15 -0.93 8.06 -2.91 -0.02 -0.95 16 36 H 0.15 -1.11 8.06 -2.91 -0.02 -1.14 16 37 H 0.15 -0.82 8.06 -2.91 -0.02 -0.85 16 38 H 0.15 -0.11 7.57 -2.91 -0.02 -0.13 16 39 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 40 H 0.12 -1.18 8.10 -2.39 -0.02 -1.19 16 41 H 0.16 -1.06 6.03 -2.91 -0.02 -1.08 16 42 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16 Total: 0.00 -26.81 363.84 -4.16 -30.97 By element: Atomic # 1 Polarization: -20.72 SS G_CDS: -0.35 Total: -21.06 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.38 Total: 9.48 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -3.76 Total: -2.29 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -6.18 Total: -19.82 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: 2.05 Total: 0.18 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -0.29 Total: 2.55 kcal Total: -26.81 -4.16 -30.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12550012_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.663 kcal (2) G-P(sol) polarization free energy of solvation -26.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds