Wall clock time and date at job start Mon Mar 8 2021 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33329 * 125.95313 * 2 1 4 4 C 1.50694 * 122.70879 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47320 * 113.53518 * 4 3 2 6 6 Si 1.86299 * 109.47067 * 233.53475 * 4 3 2 7 7 N 1.32115 * 114.57610 * 180.28923 * 3 2 1 8 8 C 1.29687 * 116.87008 * 359.48304 * 7 3 2 9 9 N 1.38602 * 124.95196 * 180.22202 * 8 7 3 10 10 C 1.46505 * 120.00026 * 180.28348 * 9 8 7 11 11 H 1.08990 * 112.84918 * 336.19596 * 10 9 8 12 12 C 1.53777 * 113.61389 * 107.50831 * 10 9 8 13 13 C 1.53777 * 87.08340 * 89.11405 * 12 10 9 14 14 H 1.09002 * 113.69462 * 270.87046 * 13 12 10 15 15 S 1.81405 * 113.61371 * 139.98266 * 13 12 10 16 16 O 1.42105 * 110.54128 * 194.12895 * 15 13 12 17 17 O 1.42101 * 110.54223 * 330.87314 * 15 13 12 18 18 C 1.76193 * 104.45028 * 82.50130 * 15 13 12 19 19 C 1.38243 * 120.00107 * 269.72488 * 18 15 13 20 20 C 1.38235 * 119.99848 * 179.76716 * 19 18 15 21 21 C 1.38236 * 119.99816 * 0.50976 * 20 19 18 22 22 C 1.38234 * 120.00282 * 359.74550 * 21 20 19 23 23 C 1.38229 * 119.99773 * 359.97438 * 22 21 20 24 24 C 1.53782 * 87.08210 * 25.43245 * 13 12 10 25 25 S 1.70972 * 110.09762 * 0.49515 * 8 7 3 26 26 H 1.09000 * 109.47055 * 84.86379 * 1 2 3 27 27 H 1.08997 * 109.47711 * 204.87109 * 1 2 3 28 28 H 1.08999 * 109.47006 * 324.86680 * 1 2 3 29 29 H 1.09004 * 109.47337 * 353.53542 * 4 3 2 30 30 H 0.96705 * 113.99782 * 60.00092 * 5 4 3 31 31 H 1.48508 * 109.99735 * 58.68291 * 6 4 3 32 32 H 1.48501 * 110.00241 * 179.97438 * 6 4 3 33 33 H 0.96999 * 120.00565 * 0.28629 * 9 8 7 34 34 H 1.08999 * 113.61377 * 203.66413 * 12 10 9 35 35 H 1.09000 * 113.61503 * 334.55995 * 12 10 9 36 36 H 1.07993 * 119.99625 * 0.02562 * 19 18 15 37 37 H 1.07992 * 119.99821 * 180.22979 * 20 19 18 38 38 H 1.08006 * 119.99737 * 179.72439 * 21 20 19 39 39 H 1.08001 * 119.99606 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99911 * 179.97438 * 23 22 21 41 41 H 1.08994 * 113.61205 * 220.01595 * 24 13 12 42 42 H 1.08998 * 113.60987 * 89.11365 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 0.0006 5 8 2.0697 3.1221 1.2358 6 14 2.4874 3.4416 -1.4120 7 7 3.5850 0.8187 -0.0061 8 6 3.9315 -0.4310 -0.0007 9 7 5.2383 -0.8927 -0.0013 10 6 5.5064 -2.3330 -0.0012 11 1 4.6806 -2.9172 0.4047 12 6 6.0352 -2.8613 -1.3451 13 6 7.4470 -2.5445 -0.8245 14 1 7.7796 -1.5310 -1.0492 15 16 8.6803 -3.8025 -1.2571 16 8 9.8630 -3.6261 -0.4894 17 8 8.0688 -5.0796 -1.3776 18 6 9.1649 -3.3959 -2.9016 19 6 8.4905 -3.9442 -3.9766 20 6 8.8676 -3.6214 -5.2667 21 6 9.9260 -2.7586 -5.4819 22 6 10.6039 -2.2145 -4.4071 23 6 10.2230 -2.5327 -3.1170 24 6 6.8748 -2.7048 0.5938 25 16 2.5412 -1.4261 -0.0006 26 1 -0.3633 0.0920 -1.0235 27 1 -0.3634 -0.9323 0.4322 28 1 -0.3633 0.8404 0.5914 29 1 0.6581 2.4499 -0.1148 30 1 3.0196 3.1868 1.4049 31 1 2.1800 2.7695 -2.7002 32 1 1.9542 4.8275 -1.4229 33 1 5.9755 -0.2623 -0.0017 34 1 5.8546 -3.9254 -1.4975 35 1 5.7385 -2.2540 -2.2002 36 1 7.6662 -4.6214 -3.8083 37 1 8.3384 -4.0468 -6.1064 38 1 10.2236 -2.5099 -6.4900 39 1 11.4310 -1.5407 -4.5753 40 1 10.7528 -2.1080 -2.2772 41 1 7.2562 -1.9712 1.3040 42 1 6.9238 -3.7262 0.9714 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12550012_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:25:18 Heat of formation + Delta-G solvation = 13.869121 kcal Electronic energy + Delta-G solvation = -27880.004624 eV Core-core repulsion = 23854.167812 eV Total energy + Delta-G solvation = -4025.836812 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.27578 -40.58930 -40.17977 -38.19313 -37.51679 -37.02088 -35.53001 -32.88957 -32.44025 -32.13811 -29.10710 -27.37205 -27.08889 -25.69956 -24.53933 -24.24497 -23.85010 -21.74871 -20.60033 -20.09180 -19.20859 -18.94464 -18.31779 -17.87473 -17.31055 -17.20176 -17.07487 -16.78742 -16.42112 -15.86187 -15.74121 -15.64639 -15.40922 -15.28729 -14.64922 -14.59952 -14.40268 -14.20278 -14.15358 -14.06083 -13.94677 -13.86916 -13.56369 -13.34653 -13.16252 -13.06108 -12.92309 -12.48698 -12.43337 -12.37851 -12.22773 -11.91117 -11.80922 -11.44834 -11.11300 -10.71094 -10.49044 -10.43665 -10.16142 -10.05886 -8.75951 -4.86992 -1.09212 -0.27740 -0.08011 0.08932 0.17914 0.69462 1.29902 1.61907 1.70462 1.71568 1.86616 2.04474 2.29900 2.51629 2.68578 2.87852 3.11706 3.25153 3.36343 3.48006 3.62456 3.71626 3.78603 3.89049 3.94020 3.98619 4.10201 4.13544 4.20095 4.21224 4.29924 4.34952 4.39993 4.49121 4.54123 4.56194 4.56711 4.79881 4.83876 4.86122 4.94578 5.11905 5.13173 5.25575 5.44299 5.70730 6.13838 6.58286 6.83362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.244 4.244 3 C 0.072 3.928 4 C -0.032 4.032 5 O -0.536 6.536 6 Si 0.709 3.291 7 N -0.537 5.537 8 C 0.318 3.682 9 N -0.676 5.676 10 C 0.140 3.860 11 H 0.108 0.892 12 C -0.130 4.130 13 C -0.603 4.603 14 H 0.157 0.843 15 S 2.501 3.499 16 O -0.932 6.932 17 O -0.929 6.929 18 C -0.659 4.659 19 C -0.023 4.023 20 C -0.140 4.140 21 C -0.064 4.064 22 C -0.140 4.140 23 C -0.026 4.026 24 C -0.114 4.114 25 S 0.110 5.890 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.383 0.617 31 H -0.261 1.261 32 H -0.251 1.251 33 H 0.415 0.585 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.103 0.897 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 0.321 -2.422 2.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.367 4.367 3 C -0.058 4.058 4 C -0.146 4.146 5 O -0.341 6.341 6 Si 0.609 3.391 7 N -0.262 5.262 8 C -0.053 4.053 9 N -0.316 5.316 10 C 0.032 3.968 11 H 0.126 0.874 12 C -0.170 4.170 13 C -0.712 4.712 14 H 0.175 0.825 15 S 2.681 3.319 16 O -0.929 6.929 17 O -0.927 6.927 18 C -0.746 4.746 19 C -0.042 4.042 20 C -0.159 4.159 21 C -0.082 4.082 22 C -0.158 4.158 23 C -0.044 4.044 24 C -0.153 4.153 25 S 0.359 5.641 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.136 0.864 30 H 0.230 0.770 31 H -0.186 1.186 32 H -0.176 1.176 33 H 0.254 0.746 34 H 0.138 0.862 35 H 0.115 0.885 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.122 0.878 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.052 -0.735 -2.636 2.737 hybrid contribution -0.270 1.264 -0.516 1.391 sum -0.322 0.528 -3.152 3.212 Atomic orbital electron populations 1.20211 0.86893 1.03453 1.02761 1.25158 1.01211 0.93302 1.17024 1.20070 0.86850 0.97192 1.01698 1.24725 1.02975 0.89751 0.97126 1.86476 1.29919 1.79550 1.38168 0.93843 0.91316 0.78640 0.75292 1.65936 1.17105 1.16543 1.26656 1.23208 0.91524 0.91707 0.98884 1.43452 1.02010 1.05820 1.80367 1.21758 0.98055 0.80492 0.96467 0.87377 1.23371 0.89941 1.04280 0.99382 1.31771 1.13194 1.19130 1.07105 0.82481 1.05372 0.75745 0.76229 0.74516 1.93594 1.43793 1.86557 1.68992 1.93590 1.78431 1.34840 1.85791 1.30492 1.09103 1.12604 1.22405 1.20981 0.96828 0.94476 0.91896 1.21371 0.98193 0.99071 0.97257 1.21584 0.93473 0.93517 0.99647 1.21367 1.00829 1.01118 0.92527 1.20997 0.92626 0.92362 0.98462 1.23066 0.94508 1.04977 0.92794 1.83972 0.96338 1.10067 1.73740 0.90816 0.91056 0.90167 0.86367 0.76965 1.18566 1.17615 0.74611 0.86203 0.88483 0.84068 0.84816 0.85008 0.84792 0.84084 0.87808 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.04 9.71 36.01 0.35 0.39 16 2 C -0.24 -0.31 6.57 -36.02 -0.24 -0.55 16 3 C 0.07 0.13 5.20 -84.19 -0.44 -0.31 16 4 C -0.03 -0.04 2.84 36.00 0.10 0.07 16 5 O -0.54 -0.92 12.88 -35.23 -0.45 -1.38 16 6 Si 0.71 0.44 32.61 -169.99 -5.54 -5.11 16 7 N -0.54 -0.77 9.76 -11.37 -0.11 -0.88 16 8 C 0.32 0.06 8.24 -87.69 -0.72 -0.66 16 9 N -0.68 1.66 5.42 -54.99 -0.30 1.36 16 10 C 0.14 -0.52 4.31 -67.12 -0.29 -0.81 16 11 H 0.11 -0.44 7.06 -51.93 -0.37 -0.80 16 12 C -0.13 0.53 7.44 -25.92 -0.19 0.34 16 13 C -0.60 2.42 4.19 -25.92 -0.11 2.32 16 14 H 0.16 -0.94 8.14 -51.93 -0.42 -1.36 16 15 S 2.50 -1.07 5.13 -107.50 -0.55 -1.62 16 16 O -0.93 -2.73 17.13 -57.54 -0.99 -3.72 16 17 O -0.93 -1.91 16.30 -57.54 -0.94 -2.85 16 18 C -0.66 0.06 5.66 -39.58 -0.22 -0.17 16 19 C -0.02 0.01 9.47 -39.58 -0.37 -0.37 16 20 C -0.14 0.14 10.05 -39.58 -0.40 -0.26 16 21 C -0.06 0.08 10.05 -39.58 -0.40 -0.32 16 22 C -0.14 0.13 10.05 -39.59 -0.40 -0.27 16 23 C -0.03 0.01 9.47 -39.59 -0.37 -0.37 16 24 C -0.11 0.49 7.42 -25.92 -0.19 0.30 16 25 S 0.11 -0.01 21.69 -107.50 -2.33 -2.34 16 26 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 27 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 28 H 0.08 -0.07 7.17 -51.93 -0.37 -0.44 16 29 H 0.12 0.06 6.33 -51.93 -0.33 -0.27 16 30 H 0.38 -0.42 8.70 45.56 0.40 -0.02 16 31 H -0.26 -0.83 7.11 56.52 0.40 -0.43 16 32 H -0.25 -0.71 7.11 56.52 0.40 -0.31 16 33 H 0.42 -1.48 8.82 -40.82 -0.36 -1.84 16 34 H 0.12 -0.55 7.43 -51.93 -0.39 -0.94 16 35 H 0.10 -0.41 8.14 -51.93 -0.42 -0.83 16 36 H 0.14 -0.27 7.56 -52.49 -0.40 -0.67 16 37 H 0.13 -0.40 8.06 -52.49 -0.42 -0.83 16 38 H 0.13 -0.45 8.06 -52.48 -0.42 -0.87 16 39 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 40 H 0.14 -0.22 7.57 -52.49 -0.40 -0.62 16 41 H 0.10 -0.53 8.14 -51.93 -0.42 -0.95 16 42 H 0.11 -0.58 8.10 -51.93 -0.42 -1.00 16 LS Contribution 379.41 15.07 5.72 5.72 Total: 0.00 -10.90 379.41 -14.60 -25.50 By element: Atomic # 1 Polarization: -8.83 SS G_CDS: -5.21 Total: -14.04 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -3.89 Total: -0.66 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -0.41 Total: 0.49 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -2.38 Total: -7.94 kcal Atomic # 14 Polarization: 0.44 SS G_CDS: -5.54 Total: -5.11 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.88 Total: -3.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -10.90 -14.60 -25.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12550012_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.369 kcal (2) G-P(sol) polarization free energy of solvation -10.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds