Wall clock time and date at job start Mon Mar 8 2021 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33329 * 125.95313 * 2 1 4 4 C 1.50694 * 122.70879 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47320 * 113.53518 * 4 3 2 6 6 Si 1.86299 * 109.47067 * 233.53475 * 4 3 2 7 7 N 1.32115 * 114.57610 * 180.28923 * 3 2 1 8 8 C 1.29687 * 116.87008 * 359.48304 * 7 3 2 9 9 N 1.38602 * 124.95196 * 180.22202 * 8 7 3 10 10 C 1.46505 * 120.00026 * 180.28348 * 9 8 7 11 11 H 1.08990 * 112.84918 * 336.19596 * 10 9 8 12 12 C 1.53777 * 113.61389 * 107.50831 * 10 9 8 13 13 C 1.53777 * 87.08340 * 89.11405 * 12 10 9 14 14 H 1.09002 * 113.69462 * 270.87046 * 13 12 10 15 15 S 1.81405 * 113.61371 * 139.98266 * 13 12 10 16 16 O 1.42105 * 110.54128 * 194.12895 * 15 13 12 17 17 O 1.42101 * 110.54223 * 330.87314 * 15 13 12 18 18 C 1.76193 * 104.45028 * 82.50130 * 15 13 12 19 19 C 1.38243 * 120.00107 * 269.72488 * 18 15 13 20 20 C 1.38235 * 119.99848 * 179.76716 * 19 18 15 21 21 C 1.38236 * 119.99816 * 0.50976 * 20 19 18 22 22 C 1.38234 * 120.00282 * 359.74550 * 21 20 19 23 23 C 1.38229 * 119.99773 * 359.97438 * 22 21 20 24 24 C 1.53782 * 87.08210 * 25.43245 * 13 12 10 25 25 S 1.70972 * 110.09762 * 0.49515 * 8 7 3 26 26 H 1.09000 * 109.47055 * 84.86379 * 1 2 3 27 27 H 1.08997 * 109.47711 * 204.87109 * 1 2 3 28 28 H 1.08999 * 109.47006 * 324.86680 * 1 2 3 29 29 H 1.09004 * 109.47337 * 353.53542 * 4 3 2 30 30 H 0.96705 * 113.99782 * 60.00092 * 5 4 3 31 31 H 1.48508 * 109.99735 * 58.68291 * 6 4 3 32 32 H 1.48501 * 110.00241 * 179.97438 * 6 4 3 33 33 H 0.96999 * 120.00565 * 0.28629 * 9 8 7 34 34 H 1.08999 * 113.61377 * 203.66413 * 12 10 9 35 35 H 1.09000 * 113.61503 * 334.55995 * 12 10 9 36 36 H 1.07993 * 119.99625 * 0.02562 * 19 18 15 37 37 H 1.07992 * 119.99821 * 180.22979 * 20 19 18 38 38 H 1.08006 * 119.99737 * 179.72439 * 21 20 19 39 39 H 1.08001 * 119.99606 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99911 * 179.97438 * 23 22 21 41 41 H 1.08994 * 113.61205 * 220.01595 * 24 13 12 42 42 H 1.08998 * 113.60987 * 89.11365 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 0.0006 5 8 2.0697 3.1221 1.2358 6 14 2.4874 3.4416 -1.4120 7 7 3.5850 0.8187 -0.0061 8 6 3.9315 -0.4310 -0.0007 9 7 5.2383 -0.8927 -0.0013 10 6 5.5064 -2.3330 -0.0012 11 1 4.6806 -2.9172 0.4047 12 6 6.0352 -2.8613 -1.3451 13 6 7.4470 -2.5445 -0.8245 14 1 7.7796 -1.5310 -1.0492 15 16 8.6803 -3.8025 -1.2571 16 8 9.8630 -3.6261 -0.4894 17 8 8.0688 -5.0796 -1.3776 18 6 9.1649 -3.3959 -2.9016 19 6 8.4905 -3.9442 -3.9766 20 6 8.8676 -3.6214 -5.2667 21 6 9.9260 -2.7586 -5.4819 22 6 10.6039 -2.2145 -4.4071 23 6 10.2230 -2.5327 -3.1170 24 6 6.8748 -2.7048 0.5938 25 16 2.5412 -1.4261 -0.0006 26 1 -0.3633 0.0920 -1.0235 27 1 -0.3634 -0.9323 0.4322 28 1 -0.3633 0.8404 0.5914 29 1 0.6581 2.4499 -0.1148 30 1 3.0196 3.1868 1.4049 31 1 2.1800 2.7695 -2.7002 32 1 1.9542 4.8275 -1.4229 33 1 5.9755 -0.2623 -0.0017 34 1 5.8546 -3.9254 -1.4975 35 1 5.7385 -2.2540 -2.2002 36 1 7.6662 -4.6214 -3.8083 37 1 8.3384 -4.0468 -6.1064 38 1 10.2236 -2.5099 -6.4900 39 1 11.4310 -1.5407 -4.5753 40 1 10.7528 -2.1080 -2.2772 41 1 7.2562 -1.9712 1.3040 42 1 6.9238 -3.7262 0.9714 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12550012_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:25:17 Heat of formation + Delta-G solvation = 12.652261 kcal Electronic energy + Delta-G solvation = -27880.057391 eV Core-core repulsion = 23854.167812 eV Total energy + Delta-G solvation = -4025.889579 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19044 -40.42253 -40.05334 -38.24314 -37.56217 -37.07702 -35.42839 -32.81206 -32.32187 -32.01742 -29.09669 -27.06192 -26.91011 -25.67134 -24.48183 -24.13558 -23.73222 -21.58407 -20.52341 -20.01507 -19.11054 -18.87713 -18.22959 -17.91594 -17.24282 -17.04137 -16.96424 -16.67117 -16.38425 -15.78300 -15.70196 -15.55880 -15.34941 -15.21259 -14.51276 -14.45413 -14.29794 -14.19830 -14.08211 -13.97783 -13.77737 -13.72386 -13.51450 -13.25404 -13.24148 -13.12479 -12.91757 -12.52047 -12.23805 -12.18075 -12.07568 -11.91165 -11.76441 -11.31539 -10.99985 -10.70547 -10.47554 -10.37473 -10.06291 -10.04828 -8.69128 -4.94241 -1.00144 -0.19183 -0.07349 0.13392 0.27907 0.70028 1.24515 1.60976 1.73697 1.79699 1.83377 1.96133 2.41982 2.71313 2.88360 3.04854 3.35796 3.36016 3.43150 3.64031 3.79908 3.86577 3.93391 3.99387 4.08314 4.16111 4.24734 4.36592 4.40562 4.41681 4.48202 4.51461 4.65151 4.66793 4.69498 4.80775 4.83194 4.88633 4.93451 4.94758 5.06332 5.19050 5.25421 5.37803 5.60589 5.84424 6.32344 6.63946 6.86999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.265 4.265 3 C 0.059 3.941 4 C -0.036 4.036 5 O -0.549 6.549 6 Si 0.777 3.223 7 N -0.551 5.551 8 C 0.312 3.688 9 N -0.666 5.666 10 C 0.137 3.863 11 H 0.114 0.886 12 C -0.130 4.130 13 C -0.577 4.577 14 H 0.181 0.819 15 S 2.502 3.498 16 O -0.974 6.974 17 O -0.962 6.962 18 C -0.667 4.667 19 C -0.039 4.039 20 C -0.149 4.149 21 C -0.072 4.072 22 C -0.148 4.148 23 C -0.044 4.044 24 C -0.118 4.118 25 S 0.125 5.875 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.393 0.607 31 H -0.296 1.296 32 H -0.283 1.283 33 H 0.421 0.579 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 0.487 -2.615 2.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.388 4.388 3 C -0.072 4.072 4 C -0.149 4.149 5 O -0.356 6.356 6 Si 0.682 3.318 7 N -0.278 5.278 8 C -0.060 4.060 9 N -0.307 5.307 10 C 0.030 3.970 11 H 0.132 0.868 12 C -0.170 4.170 13 C -0.690 4.690 14 H 0.199 0.801 15 S 2.688 3.312 16 O -0.971 6.971 17 O -0.959 6.959 18 C -0.754 4.754 19 C -0.058 4.058 20 C -0.168 4.168 21 C -0.090 4.090 22 C -0.167 4.167 23 C -0.063 4.063 24 C -0.157 4.157 25 S 0.375 5.625 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.243 0.757 31 H -0.223 1.223 32 H -0.210 1.210 33 H 0.261 0.739 34 H 0.144 0.856 35 H 0.121 0.879 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.135 0.865 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.048 -0.615 -2.819 2.886 hybrid contribution -0.272 1.210 -0.485 1.331 sum -0.320 0.595 -3.304 3.372 Atomic orbital electron populations 1.20261 0.86052 1.03822 1.03251 1.25472 1.02206 0.93913 1.17175 1.20175 0.87271 0.97440 1.02271 1.24805 1.03242 0.89850 0.97038 1.86441 1.31122 1.79617 1.38428 0.93016 0.90390 0.75572 0.72862 1.65938 1.16975 1.17171 1.27690 1.23447 0.92495 0.91615 0.98401 1.43542 1.01287 1.06474 1.79390 1.21840 0.98548 0.79834 0.96818 0.86786 1.23462 0.89245 1.04851 0.99453 1.31646 1.11345 1.18378 1.07621 0.80123 1.05123 0.75620 0.76510 0.73990 1.93537 1.46325 1.87302 1.69911 1.93541 1.78730 1.37527 1.86099 1.30480 1.09563 1.12956 1.22440 1.21223 0.97388 0.94894 0.92253 1.21686 0.98416 0.99045 0.97604 1.21914 0.93227 0.93168 1.00648 1.21672 1.01333 1.01340 0.92369 1.21223 0.92950 0.92864 0.99218 1.23231 0.93794 1.06001 0.92669 1.83842 0.95827 1.09261 1.73613 0.90174 0.90374 0.90184 0.86119 0.75724 1.22294 1.20971 0.73861 0.85646 0.87876 0.83228 0.83053 0.82942 0.83084 0.83529 0.86511 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.09 9.71 71.24 0.69 0.78 16 2 C -0.26 -0.65 6.57 24.58 0.16 -0.49 16 3 C 0.06 0.21 5.20 41.40 0.22 0.42 16 4 C -0.04 -0.09 2.84 71.23 0.20 0.11 16 5 O -0.55 -1.92 12.88 -148.98 -1.92 -3.84 16 6 Si 0.78 1.38 32.61 68.60 2.24 3.61 16 7 N -0.55 -1.37 9.76 -189.87 -1.85 -3.22 16 8 C 0.31 -0.13 8.24 179.32 1.48 1.35 16 9 N -0.67 4.15 5.42 -327.90 -1.78 2.37 16 10 C 0.14 -1.20 4.31 45.52 0.20 -1.01 16 11 H 0.11 -1.07 7.06 -2.39 -0.02 -1.09 16 12 C -0.13 1.20 7.44 31.12 0.23 1.43 16 13 C -0.58 5.11 4.19 31.12 0.13 5.24 16 14 H 0.18 -2.44 8.14 -2.39 -0.02 -2.46 16 15 S 2.50 -0.32 5.13 -56.49 -0.29 -0.61 16 16 O -0.97 -6.98 17.13 -127.65 -2.19 -9.17 16 17 O -0.96 -5.00 16.30 -127.65 -2.08 -7.08 16 18 C -0.67 -0.31 5.66 22.27 0.13 -0.19 16 19 C -0.04 0.02 9.47 22.27 0.21 0.23 16 20 C -0.15 0.34 10.05 22.27 0.22 0.56 16 21 C -0.07 0.22 10.05 22.27 0.22 0.44 16 22 C -0.15 0.30 10.05 22.27 0.22 0.52 16 23 C -0.04 0.00 9.47 22.27 0.21 0.21 16 24 C -0.12 1.15 7.42 31.12 0.23 1.38 16 25 S 0.13 -0.10 21.69 -56.49 -1.23 -1.32 16 26 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.08 -0.11 7.17 -2.39 -0.02 -0.13 16 29 H 0.12 0.17 6.33 -2.39 -0.02 0.15 16 30 H 0.39 -0.88 8.70 -74.05 -0.64 -1.53 16 31 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 32 H -0.28 -1.90 7.11 99.48 0.71 -1.19 16 33 H 0.42 -3.66 8.82 -92.71 -0.82 -4.48 16 34 H 0.13 -1.23 7.43 -2.39 -0.02 -1.25 16 35 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.15 -0.49 7.56 -2.91 -0.02 -0.51 16 37 H 0.15 -1.02 8.06 -2.91 -0.02 -1.04 16 38 H 0.15 -1.21 8.06 -2.91 -0.02 -1.23 16 39 H 0.15 -0.97 8.06 -2.91 -0.02 -0.99 16 40 H 0.15 -0.32 7.57 -2.91 -0.02 -0.34 16 41 H 0.12 -1.39 8.14 -2.39 -0.02 -1.41 16 42 H 0.12 -1.34 8.10 -2.39 -0.02 -1.36 16 Total: 0.00 -25.46 379.41 -4.68 -30.14 By element: Atomic # 1 Polarization: -21.55 SS G_CDS: -0.35 Total: -21.89 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 4.76 Total: 11.01 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -3.63 Total: -0.85 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -6.19 Total: -20.09 kcal Atomic # 14 Polarization: 1.38 SS G_CDS: 2.24 Total: 3.61 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.93 kcal Total: -25.46 -4.68 -30.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12550012_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.790 kcal (2) G-P(sol) polarization free energy of solvation -25.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds