Wall clock time and date at job start Mon Mar 8 2021 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47155 * 2 1 4 4 C 1.52996 * 109.47467 * 240.00276 * 2 1 3 5 5 O 1.45201 * 109.47449 * 119.99766 * 2 1 3 6 6 C 1.34230 * 116.99712 * 60.00307 * 5 2 1 7 7 O 1.20827 * 119.99809 * 359.97438 * 6 5 2 8 8 C 1.50700 * 120.00046 * 180.02562 * 6 5 2 9 9 H 1.08996 * 112.84607 * 311.19649 * 8 6 5 10 10 C 1.53781 * 113.69071 * 82.46184 * 8 6 5 11 11 C 1.53783 * 87.07900 * 139.99441 * 10 8 6 12 12 H 1.09003 * 113.69102 * 89.13058 * 11 10 8 13 13 N 1.46505 * 113.61182 * 220.01549 * 11 10 8 14 14 C 1.38993 * 120.00282 * 252.49809 * 13 11 10 15 15 N 1.32397 * 119.70858 * 179.97438 * 14 13 11 16 16 C 1.31977 * 121.62351 * 179.97438 * 15 14 13 17 17 C 1.38018 * 120.85481 * 359.97438 * 16 15 14 18 18 C 1.50707 * 120.33108 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.46836 * 245.00145 * 18 17 16 20 20 Si 1.86293 * 109.47268 * 5.00174 * 18 17 16 21 21 C 1.38880 * 119.33470 * 0.02562 * 17 16 15 22 22 C 1.38305 * 118.50194 * 359.97438 * 21 17 16 23 23 C 1.53773 * 87.08074 * 334.56654 * 11 10 8 24 24 H 1.08998 * 109.47145 * 299.99567 * 1 2 3 25 25 H 1.08996 * 109.47013 * 60.00300 * 1 2 3 26 26 H 1.09002 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47409 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46861 * 300.00455 * 3 2 1 29 29 H 1.09005 * 109.47012 * 59.99944 * 3 2 1 30 30 H 1.09002 * 109.46595 * 299.99678 * 4 2 1 31 31 H 1.08999 * 109.47410 * 59.99180 * 4 2 1 32 32 H 1.09000 * 109.47693 * 180.02562 * 4 2 1 33 33 H 1.08997 * 113.61642 * 25.44473 * 10 8 6 34 34 H 1.09003 * 113.61170 * 254.54174 * 10 8 6 35 35 H 0.97001 * 119.99758 * 72.49752 * 13 11 10 36 36 H 1.08002 * 119.56975 * 179.97438 * 16 15 14 37 37 H 1.08997 * 109.47204 * 125.00189 * 18 17 16 38 38 H 0.96699 * 113.99917 * 59.99892 * 19 18 17 39 39 H 1.48497 * 110.00015 * 180.02562 * 20 18 17 40 40 H 1.48505 * 109.99843 * 301.31862 * 20 18 17 41 41 H 1.07998 * 120.75276 * 180.24919 * 21 17 16 42 42 H 1.07999 * 120.44559 * 179.97438 * 22 21 17 43 43 H 1.08998 * 113.61521 * 139.98645 * 23 11 10 44 44 H 1.09005 * 113.61445 * 270.88279 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6535 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7434 2.5441 9 1 3.1879 -2.6449 2.7243 10 6 1.2577 -2.5090 3.7974 11 6 1.4023 -4.0134 4.0818 12 1 2.2767 -4.2635 4.6825 13 7 0.1734 -4.6374 4.5786 14 6 0.0773 -5.0182 5.9119 15 7 -1.0362 -5.5812 6.3548 16 6 -1.1682 -5.9578 7.6128 17 6 -0.1416 -5.7767 8.5174 18 6 -0.3049 -6.2117 9.9510 19 8 -0.2739 -5.0649 10.8031 20 14 -1.9353 -7.0904 10.1515 21 6 1.0434 -5.1897 8.0931 22 6 1.1524 -4.8054 6.7690 23 6 1.6196 -4.1981 2.5707 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7488 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7216 -1.2490 33 1 0.2356 -2.2029 3.5747 34 1 1.7373 -1.8755 4.5436 35 1 -0.5732 -4.7847 3.9771 36 1 -2.0916 -6.4135 7.9387 37 1 0.5073 -6.8867 10.2207 38 1 -0.9703 -4.4196 10.6196 39 1 -2.1086 -7.5239 11.5612 40 1 -3.0490 -6.1910 9.7567 41 1 1.8629 -5.0407 8.7805 42 1 2.0596 -4.3456 6.4056 43 1 2.3911 -4.9282 2.3266 44 1 0.6963 -4.3538 2.0126 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12626396_13915762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:43:13 Heat of formation + Delta-G solvation = -42.492358 kcal Electronic energy + Delta-G solvation = -25052.106636 eV Core-core repulsion = 21358.425877 eV Total energy + Delta-G solvation = -3693.680760 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18363 -41.40283 -40.00519 -38.11755 -37.72249 -35.43437 -34.98339 -33.38549 -31.30451 -28.45344 -28.36349 -27.88450 -26.82237 -26.07677 -24.84390 -23.44741 -22.31978 -20.98444 -20.45151 -18.95286 -18.51819 -18.38662 -17.66603 -17.25428 -17.10672 -16.50614 -16.33722 -16.19079 -15.92511 -15.44591 -15.34225 -15.06352 -14.70050 -14.64752 -14.31317 -13.99798 -13.74398 -13.60321 -13.42320 -13.34394 -13.16938 -13.00018 -12.92199 -12.58324 -12.55190 -12.40116 -12.27721 -12.06045 -12.01650 -11.76000 -11.44783 -11.09562 -10.94398 -10.75523 -10.53065 -10.37843 -8.70341 -4.90574 0.23834 0.42649 1.13082 1.34648 1.59982 1.61365 1.96601 2.17592 2.81768 3.26508 3.34875 3.47022 3.58932 3.62374 3.68989 3.70367 3.73594 3.80210 3.88879 3.95314 4.03417 4.11504 4.37380 4.43153 4.51515 4.53135 4.59787 4.63301 4.65465 4.69103 4.75477 4.79424 4.81447 4.81635 4.91644 4.93594 5.01870 5.06418 5.13939 5.18119 5.22690 5.35284 5.52676 5.57073 6.03715 6.50620 6.52168 6.77249 7.15395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.470 3.530 7 O -0.527 6.527 8 C -0.107 4.107 9 H 0.155 0.845 10 C -0.133 4.133 11 C 0.139 3.861 12 H 0.139 0.861 13 N -0.710 5.710 14 C 0.395 3.605 15 N -0.569 5.569 16 C 0.142 3.858 17 C -0.233 4.233 18 C -0.061 4.061 19 O -0.549 6.549 20 Si 0.753 3.247 21 C -0.011 4.011 22 C -0.238 4.238 23 C -0.123 4.123 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.405 0.595 36 H 0.163 0.837 37 H 0.127 0.873 38 H 0.384 0.616 39 H -0.301 1.301 40 H -0.286 1.286 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.101 0.899 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 1.041 -1.003 4.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.272 6.272 6 C 0.314 3.686 7 O -0.416 6.416 8 C -0.126 4.126 9 H 0.173 0.827 10 C -0.172 4.172 11 C 0.033 3.967 12 H 0.157 0.843 13 N -0.341 5.341 14 C 0.159 3.841 15 N -0.287 5.287 16 C -0.014 4.014 17 C -0.238 4.238 18 C -0.171 4.171 19 O -0.356 6.356 20 Si 0.659 3.341 21 C -0.037 4.037 22 C -0.263 4.263 23 C -0.161 4.161 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.241 0.759 36 H 0.179 0.821 37 H 0.145 0.855 38 H 0.233 0.767 39 H -0.229 1.229 40 H -0.213 1.213 41 H 0.167 0.833 42 H 0.175 0.825 43 H 0.119 0.881 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.154 0.553 -1.281 3.449 hybrid contribution -0.134 1.307 0.209 1.330 sum 3.021 1.860 -1.071 3.706 Atomic orbital electron populations 1.22458 0.94231 1.03493 1.03582 1.22414 0.94354 0.93341 0.82716 1.21880 1.02498 0.91220 1.03995 1.22456 1.01901 1.02032 0.97340 1.86564 1.69618 1.25484 1.45553 1.23900 0.76729 0.80614 0.87334 1.90593 1.36367 1.70479 1.44171 1.22475 1.04100 0.95212 0.90798 0.82734 1.23496 0.99813 0.98441 0.95484 1.22591 0.88005 0.91413 0.94650 0.84325 1.44607 1.18031 1.65235 1.06225 1.18697 0.89478 0.89399 0.86545 1.67147 1.25313 1.18221 1.17991 1.22462 0.98010 0.93629 0.87345 1.20956 0.96791 1.08378 0.97695 1.24861 1.13690 0.92060 0.86487 1.86565 1.56756 1.33100 1.59221 0.94216 0.73354 0.85586 0.80898 1.21443 0.96653 0.90705 0.94853 1.21724 1.00548 1.09718 0.94260 1.23327 1.03154 0.94334 0.95318 0.91908 0.89670 0.91910 0.91064 0.88839 0.91306 0.91862 0.89696 0.91560 0.90623 0.87980 0.75947 0.82051 0.85485 0.76675 1.22856 1.21257 0.83296 0.82485 0.88087 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.40 8.37 71.98 0.60 0.20 16 2 C 0.11 0.18 1.13 -10.79 -0.01 0.17 16 3 C -0.14 0.35 8.85 71.98 0.64 0.99 16 4 C -0.18 -0.31 8.37 71.98 0.60 0.29 16 5 O -0.35 -1.12 9.89 -51.42 -0.51 -1.63 16 6 C 0.47 1.30 6.80 71.24 0.48 1.79 16 7 O -0.53 -4.21 11.40 21.96 0.25 -3.96 16 8 C -0.11 0.50 4.26 -11.01 -0.05 0.45 16 9 H 0.16 -1.50 8.14 -2.39 -0.02 -1.52 16 10 C -0.13 0.70 7.43 31.12 0.23 0.93 16 11 C 0.14 -0.85 4.03 45.51 0.18 -0.67 16 12 H 0.14 -1.42 6.10 -2.39 -0.01 -1.43 16 13 N -0.71 0.75 5.53 -322.05 -1.78 -1.03 16 14 C 0.39 0.95 7.65 133.07 1.02 1.97 16 15 N -0.57 -3.33 10.39 -193.27 -2.01 -5.34 16 16 C 0.14 0.38 9.84 84.62 0.83 1.21 16 17 C -0.23 -0.09 5.36 -19.76 -0.11 -0.20 16 18 C -0.06 0.06 2.82 71.24 0.20 0.26 16 19 O -0.55 -1.07 12.84 -148.98 -1.91 -2.99 16 20 Si 0.75 -1.00 29.91 68.60 2.05 1.05 16 21 C -0.01 0.01 9.84 22.44 0.22 0.23 16 22 C -0.24 0.27 9.29 22.50 0.21 0.48 16 23 C -0.12 0.59 7.16 31.12 0.22 0.81 16 24 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 25 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.06 0.42 5.89 -2.39 -0.01 0.41 16 27 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 30 H 0.06 0.39 5.89 -2.39 -0.01 0.38 16 31 H 0.08 -0.09 8.14 -2.39 -0.02 -0.10 16 32 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 34 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H 0.40 0.00 8.85 -92.71 -0.82 -0.82 16 36 H 0.16 -0.08 4.85 -2.91 -0.01 -0.09 16 37 H 0.13 -0.41 7.96 -2.39 -0.02 -0.43 16 38 H 0.38 -1.12 8.70 -74.06 -0.64 -1.77 16 39 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 40 H -0.29 -0.86 7.01 99.48 0.70 -0.16 16 41 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 42 H 0.16 -1.05 6.03 -2.91 -0.02 -1.07 16 43 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H 0.09 -0.04 7.41 -2.38 -0.02 -0.06 16 Total: 0.00 -16.88 354.51 0.96 -15.92 By element: Atomic # 1 Polarization: -10.53 SS G_CDS: -0.41 Total: -10.93 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.28 Total: 8.91 kcal Atomic # 7 Polarization: -2.58 SS G_CDS: -3.79 Total: -6.37 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -2.17 Total: -8.58 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: 2.05 Total: 1.05 kcal Total: -16.88 0.96 -15.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12626396_13915762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.576 kcal (2) G-P(sol) polarization free energy of solvation -16.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds