Wall clock time and date at job start Mon Mar 8 2021 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 C 1.53003 * 109.47018 * 239.99765 * 2 1 3 5 5 O 1.45198 * 109.46803 * 120.00436 * 2 1 3 6 6 C 1.34225 * 117.00605 * 59.99274 * 5 2 1 7 7 O 1.20828 * 119.99812 * 0.02562 * 6 5 2 8 8 C 1.50702 * 120.00272 * 179.97438 * 6 5 2 9 9 H 1.08999 * 112.84990 * 311.20269 * 8 6 5 10 10 C 1.53785 * 113.68733 * 82.46824 * 8 6 5 11 11 C 1.53781 * 87.07700 * 139.99146 * 10 8 6 12 12 H 1.08997 * 113.68766 * 89.13059 * 11 10 8 13 13 N 1.46498 * 113.61173 * 220.01816 * 11 10 8 14 14 C 1.38616 * 119.99836 * 252.50145 * 13 11 10 15 15 N 1.29686 * 124.95099 * 0.02562 * 14 13 11 16 16 C 1.32117 * 116.86560 * 180.02562 * 15 14 13 17 17 C 1.33326 * 114.58211 * 359.97438 * 16 15 14 18 18 C 1.50703 * 125.95239 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.47055 * 300.00383 * 18 17 16 20 20 Si 1.86304 * 109.46911 * 180.02562 * 18 17 16 21 21 S 1.70975 * 124.94883 * 180.34072 * 14 13 11 22 22 C 1.53780 * 87.08378 * 334.56534 * 11 10 8 23 23 H 1.09004 * 109.47208 * 300.00474 * 1 2 3 24 24 H 1.09008 * 109.46990 * 59.99994 * 1 2 3 25 25 H 1.08996 * 109.47788 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47078 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47083 * 299.99753 * 3 2 1 28 28 H 1.08995 * 109.47140 * 59.99550 * 3 2 1 29 29 H 1.08996 * 109.47114 * 300.00747 * 4 2 1 30 30 H 1.09005 * 109.46868 * 59.99774 * 4 2 1 31 31 H 1.08996 * 109.47474 * 180.02562 * 4 2 1 32 32 H 1.09001 * 113.61092 * 25.44730 * 10 8 6 33 33 H 1.08994 * 113.61163 * 254.54171 * 10 8 6 34 34 H 0.96998 * 120.00195 * 72.49913 * 13 11 10 35 35 H 1.08003 * 122.70761 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47152 * 60.00191 * 18 17 16 37 37 H 0.96703 * 114.00193 * 180.02562 * 19 18 17 38 38 H 1.48501 * 109.99997 * 298.67752 * 20 18 17 39 39 H 1.48495 * 110.00011 * 60.00027 * 20 18 17 40 40 H 1.09008 * 113.61011 * 139.97749 * 22 11 10 41 41 H 1.08999 * 113.61805 * 270.79882 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6532 -1.9684 1.3379 7 8 0.9565 -2.5028 0.5079 8 6 2.1181 -2.7438 2.5436 9 1 3.1887 -2.6456 2.7230 10 6 1.2593 -2.5095 3.7976 11 6 1.4038 -4.0140 4.0815 12 1 2.2786 -4.2643 4.6815 13 7 0.1752 -4.6379 4.5791 14 6 0.0803 -5.0179 5.9087 15 7 1.0166 -4.8667 6.7933 16 6 0.7546 -5.2878 8.0178 17 6 -0.4585 -5.8184 8.1743 18 6 -1.0219 -6.3755 9.4562 19 8 -0.2002 -7.4533 9.9089 20 14 -2.7518 -6.9982 9.1552 21 16 -1.2853 -5.7612 6.6198 22 6 1.6199 -4.1984 2.5702 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2075 -2.1393 31 1 3.1300 -0.7218 -1.2491 32 1 0.2370 -2.2033 3.5757 33 1 1.7395 -1.8763 4.5436 34 1 -0.5718 -4.7850 3.9781 35 1 1.4658 -5.2087 8.8268 36 1 -1.0440 -5.5924 10.2140 37 1 -0.5041 -7.8611 10.7314 38 1 -3.6244 -5.8805 8.7142 39 1 -2.7348 -8.0666 8.1240 40 1 2.3913 -4.9287 2.3254 41 1 0.6963 -4.3553 2.0129 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12626396_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:43:16 Heat of formation + Delta-G solvation = -38.144040 kcal Electronic energy + Delta-G solvation = -23576.606096 eV Core-core repulsion = 19972.266140 eV Total energy + Delta-G solvation = -3604.339956 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.12513 -40.82986 -39.90804 -37.92458 -37.62859 -35.41530 -34.93645 -31.40868 -28.39907 -28.38416 -28.10356 -26.94336 -26.38603 -24.62029 -23.20102 -21.41841 -20.77798 -20.32780 -19.39491 -18.49667 -18.39618 -17.62181 -17.45529 -17.07805 -16.42083 -16.25990 -15.87599 -15.72889 -15.39590 -15.19573 -14.87026 -14.64207 -14.41870 -14.24991 -13.85617 -13.72011 -13.47908 -13.16979 -12.96258 -12.90218 -12.87155 -12.59365 -12.50443 -12.44024 -12.35791 -12.13793 -12.04372 -11.85866 -11.37631 -11.17507 -10.88740 -10.63029 -10.32019 -10.13780 -8.75712 -5.21461 -0.05104 0.09122 0.66117 1.18772 1.23131 1.57949 1.61433 1.93235 2.02770 2.14353 3.15030 3.23398 3.43820 3.53291 3.57530 3.68810 3.72035 3.76085 3.87178 3.92219 3.98621 4.35217 4.41851 4.46512 4.50752 4.52875 4.55657 4.66909 4.71775 4.74569 4.76755 4.78511 4.83432 4.87145 4.93540 5.04236 5.20975 5.24570 5.27003 5.56368 5.80946 6.00502 6.58637 6.83768 6.98246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.348 6.348 6 C 0.477 3.523 7 O -0.501 6.501 8 C -0.110 4.110 9 H 0.130 0.870 10 C -0.134 4.134 11 C 0.142 3.858 12 H 0.126 0.874 13 N -0.681 5.681 14 C 0.330 3.670 15 N -0.546 5.546 16 C 0.124 3.876 17 C -0.261 4.261 18 C -0.017 4.017 19 O -0.545 6.545 20 Si 0.667 3.333 21 S 0.070 5.930 22 C -0.127 4.127 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.416 0.584 35 H 0.179 0.821 36 H 0.082 0.918 37 H 0.383 0.617 38 H -0.242 1.242 39 H -0.239 1.239 40 H 0.089 0.911 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 0.947 2.475 2.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.080 3.920 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.265 6.265 6 C 0.320 3.680 7 O -0.389 6.389 8 C -0.130 4.130 9 H 0.148 0.852 10 C -0.174 4.174 11 C 0.035 3.965 12 H 0.144 0.856 13 N -0.320 5.320 14 C -0.040 4.040 15 N -0.271 5.271 16 C -0.027 4.027 17 C -0.383 4.383 18 C -0.130 4.130 19 O -0.352 6.352 20 Si 0.567 3.433 21 S 0.319 5.681 22 C -0.166 4.166 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.253 0.747 35 H 0.196 0.804 36 H 0.100 0.900 37 H 0.231 0.769 38 H -0.166 1.166 39 H -0.163 1.163 40 H 0.108 0.892 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.050 0.869 0.485 2.278 hybrid contribution 0.718 0.462 0.099 0.860 sum -1.331 1.330 0.584 1.971 Atomic orbital electron populations 1.22495 0.93929 1.04643 1.02977 1.22241 0.94452 0.92416 0.82876 1.21866 1.02363 0.92406 1.03278 1.22496 1.01791 1.03069 0.96714 1.86563 1.69537 1.25198 1.45204 1.23262 0.77270 0.80698 0.86800 1.90589 1.35311 1.70061 1.42941 1.22304 1.02915 0.95627 0.92124 0.85176 1.23496 1.00387 0.98191 0.95313 1.22523 0.88134 0.91638 0.94235 0.85607 1.44051 1.18165 1.65545 1.04202 1.23830 0.93104 0.96244 0.90865 1.66452 1.30393 1.28806 1.01479 1.21339 0.94363 0.94070 0.92927 1.24292 0.99759 1.16958 0.97330 1.23674 1.04278 0.92183 0.92909 1.86513 1.53904 1.49069 1.45699 0.95157 0.76359 0.83287 0.88494 1.84129 1.19012 1.60951 1.04034 1.23405 1.03519 0.94273 0.95370 0.91962 0.90832 0.89919 0.91336 0.90157 0.91374 0.89866 0.90834 0.91885 0.89151 0.89188 0.74652 0.80403 0.90025 0.76884 1.16630 1.16260 0.89236 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.17 8.37 37.16 0.31 0.14 16 2 C 0.12 0.12 1.13 -90.62 -0.10 0.02 16 3 C -0.14 0.09 8.85 37.16 0.33 0.42 16 4 C -0.18 -0.18 8.37 37.16 0.31 0.13 16 5 O -0.35 -0.69 9.89 -39.25 -0.39 -1.08 16 6 C 0.48 0.79 6.80 36.01 0.24 1.03 16 7 O -0.50 -1.77 11.41 -18.75 -0.21 -1.99 16 8 C -0.11 0.10 4.26 -90.96 -0.39 -0.28 16 9 H 0.13 -0.32 8.14 -51.93 -0.42 -0.74 16 10 C -0.13 0.13 7.43 -25.92 -0.19 -0.06 16 11 C 0.14 -0.10 4.36 -67.12 -0.29 -0.39 16 12 H 0.13 0.01 7.66 -51.93 -0.40 -0.39 16 13 N -0.68 -0.14 5.51 -54.99 -0.30 -0.44 16 14 C 0.33 0.87 8.09 -87.68 -0.71 0.16 16 15 N -0.55 -2.13 9.83 -15.20 -0.15 -2.28 16 16 C 0.12 0.39 11.22 -19.14 -0.21 0.18 16 17 C -0.26 -0.73 5.78 -36.02 -0.21 -0.94 16 18 C -0.02 0.00 2.98 36.01 0.11 0.11 16 19 O -0.55 -0.09 12.84 -35.23 -0.45 -0.55 16 20 Si 0.67 -0.43 31.05 -169.99 -5.28 -5.71 16 21 S 0.07 0.18 20.57 -107.50 -2.21 -2.03 16 22 C -0.13 0.16 7.15 -25.92 -0.19 -0.02 16 23 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 24 H 0.07 -0.02 8.14 -51.92 -0.42 -0.44 16 25 H 0.08 0.21 5.89 -51.93 -0.31 -0.09 16 26 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 28 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 29 H 0.08 0.22 5.89 -51.93 -0.31 -0.08 16 30 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.09 -0.04 8.10 -51.93 -0.42 -0.46 16 33 H 0.09 -0.09 8.14 -51.93 -0.42 -0.52 16 34 H 0.42 -0.61 8.85 -40.82 -0.36 -0.98 16 35 H 0.18 0.25 8.06 -52.48 -0.42 -0.17 16 36 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 37 H 0.38 -1.92 8.74 45.56 0.40 -1.52 16 38 H -0.24 -0.41 7.11 56.52 0.40 -0.01 16 39 H -0.24 -0.63 7.11 56.52 0.40 -0.23 16 40 H 0.09 -0.17 8.14 -51.92 -0.42 -0.59 16 41 H 0.10 -0.06 7.42 -51.93 -0.39 -0.45 16 LS Contribution 350.09 15.07 5.28 5.28 Total: 0.00 -7.48 350.09 -10.75 -18.23 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: -6.04 Total: -9.93 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.99 Total: 0.50 kcal Atomic # 7 Polarization: -2.27 SS G_CDS: -0.45 Total: -2.72 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: -1.05 Total: -3.61 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.28 Total: -5.71 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.21 Total: -2.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -7.48 -10.75 -18.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12626396_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.913 kcal (2) G-P(sol) polarization free energy of solvation -7.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds