Wall clock time and date at job start Mon Mar 8 2021 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 C 1.53003 * 109.47018 * 239.99765 * 2 1 3 5 5 O 1.45198 * 109.46803 * 120.00436 * 2 1 3 6 6 C 1.34225 * 117.00605 * 59.99274 * 5 2 1 7 7 O 1.20828 * 119.99812 * 0.02562 * 6 5 2 8 8 C 1.50702 * 120.00272 * 179.97438 * 6 5 2 9 9 H 1.08999 * 112.84990 * 311.20269 * 8 6 5 10 10 C 1.53785 * 113.68733 * 82.46824 * 8 6 5 11 11 C 1.53781 * 87.07700 * 139.99146 * 10 8 6 12 12 H 1.08997 * 113.68766 * 89.13059 * 11 10 8 13 13 N 1.46498 * 113.61173 * 220.01816 * 11 10 8 14 14 C 1.38616 * 119.99836 * 252.50145 * 13 11 10 15 15 N 1.29686 * 124.95099 * 0.02562 * 14 13 11 16 16 C 1.32117 * 116.86560 * 180.02562 * 15 14 13 17 17 C 1.33326 * 114.58211 * 359.97438 * 16 15 14 18 18 C 1.50703 * 125.95239 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.47055 * 300.00383 * 18 17 16 20 20 Si 1.86304 * 109.46911 * 180.02562 * 18 17 16 21 21 S 1.70975 * 124.94883 * 180.34072 * 14 13 11 22 22 C 1.53780 * 87.08378 * 334.56534 * 11 10 8 23 23 H 1.09004 * 109.47208 * 300.00474 * 1 2 3 24 24 H 1.09008 * 109.46990 * 59.99994 * 1 2 3 25 25 H 1.08996 * 109.47788 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47078 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47083 * 299.99753 * 3 2 1 28 28 H 1.08995 * 109.47140 * 59.99550 * 3 2 1 29 29 H 1.08996 * 109.47114 * 300.00747 * 4 2 1 30 30 H 1.09005 * 109.46868 * 59.99774 * 4 2 1 31 31 H 1.08996 * 109.47474 * 180.02562 * 4 2 1 32 32 H 1.09001 * 113.61092 * 25.44730 * 10 8 6 33 33 H 1.08994 * 113.61163 * 254.54171 * 10 8 6 34 34 H 0.96998 * 120.00195 * 72.49913 * 13 11 10 35 35 H 1.08003 * 122.70761 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47152 * 60.00191 * 18 17 16 37 37 H 0.96703 * 114.00193 * 180.02562 * 19 18 17 38 38 H 1.48501 * 109.99997 * 298.67752 * 20 18 17 39 39 H 1.48495 * 110.00011 * 60.00027 * 20 18 17 40 40 H 1.09008 * 113.61011 * 139.97749 * 22 11 10 41 41 H 1.08999 * 113.61805 * 270.79882 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6532 -1.9684 1.3379 7 8 0.9565 -2.5028 0.5079 8 6 2.1181 -2.7438 2.5436 9 1 3.1887 -2.6456 2.7230 10 6 1.2593 -2.5095 3.7976 11 6 1.4038 -4.0140 4.0815 12 1 2.2786 -4.2643 4.6815 13 7 0.1752 -4.6379 4.5791 14 6 0.0803 -5.0179 5.9087 15 7 1.0166 -4.8667 6.7933 16 6 0.7546 -5.2878 8.0178 17 6 -0.4585 -5.8184 8.1743 18 6 -1.0219 -6.3755 9.4562 19 8 -0.2002 -7.4533 9.9089 20 14 -2.7518 -6.9982 9.1552 21 16 -1.2853 -5.7612 6.6198 22 6 1.6199 -4.1984 2.5702 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2075 -2.1393 31 1 3.1300 -0.7218 -1.2491 32 1 0.2370 -2.2033 3.5757 33 1 1.7395 -1.8763 4.5436 34 1 -0.5718 -4.7850 3.9781 35 1 1.4658 -5.2087 8.8268 36 1 -1.0440 -5.5924 10.2140 37 1 -0.5041 -7.8611 10.7314 38 1 -3.6244 -5.8805 8.7142 39 1 -2.7348 -8.0666 8.1240 40 1 2.3913 -4.9287 2.3254 41 1 0.6963 -4.3553 2.0129 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12626396_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:43:15 Heat of formation + Delta-G solvation = -35.008454 kcal Electronic energy + Delta-G solvation = -23576.470127 eV Core-core repulsion = 19972.266140 eV Total energy + Delta-G solvation = -3604.203987 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20891 -40.94930 -39.95346 -37.98391 -37.66774 -35.48955 -35.00147 -31.49643 -28.46416 -28.38012 -28.15158 -26.89121 -26.46912 -24.72764 -23.26514 -21.45473 -20.85280 -20.42518 -19.48112 -18.52994 -18.39769 -17.71726 -17.53888 -17.16228 -16.45398 -16.29746 -15.97457 -15.81648 -15.45495 -15.27580 -14.95300 -14.69089 -14.49146 -14.32305 -13.87623 -13.68143 -13.45053 -13.19470 -13.01727 -12.94245 -12.93138 -12.63984 -12.57593 -12.48919 -12.41870 -12.16925 -12.11362 -11.86715 -11.46839 -11.21689 -10.99266 -10.78920 -10.43242 -10.22255 -8.87051 -5.19370 -0.20760 -0.06051 0.50472 1.08236 1.24041 1.56592 1.57986 1.85238 1.92709 2.08658 3.17956 3.27111 3.46499 3.55450 3.61201 3.63413 3.69985 3.71949 3.86964 3.92340 3.97862 4.40356 4.49375 4.49726 4.51685 4.52503 4.57116 4.63230 4.67982 4.72510 4.76777 4.80057 4.84453 4.86781 4.90265 5.05040 5.16397 5.17431 5.21108 5.49336 5.73634 5.98097 6.73058 6.82466 6.92918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.474 3.526 7 O -0.524 6.524 8 C -0.105 4.105 9 H 0.149 0.851 10 C -0.128 4.128 11 C 0.144 3.856 12 H 0.122 0.878 13 N -0.674 5.674 14 C 0.328 3.672 15 N -0.566 5.566 16 C 0.111 3.889 17 C -0.273 4.273 18 C -0.022 4.022 19 O -0.563 6.563 20 Si 0.754 3.246 21 S 0.049 5.951 22 C -0.120 4.120 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.422 0.578 35 H 0.192 0.808 36 H 0.107 0.893 37 H 0.405 0.595 38 H -0.275 1.275 39 H -0.287 1.287 40 H 0.099 0.901 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 1.417 3.084 3.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.318 3.682 7 O -0.413 6.413 8 C -0.125 4.125 9 H 0.167 0.833 10 C -0.168 4.168 11 C 0.037 3.963 12 H 0.140 0.860 13 N -0.313 5.313 14 C -0.043 4.043 15 N -0.292 5.292 16 C -0.039 4.039 17 C -0.395 4.395 18 C -0.135 4.135 19 O -0.373 6.373 20 Si 0.659 3.341 21 S 0.297 5.703 22 C -0.158 4.158 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.262 0.738 35 H 0.208 0.792 36 H 0.125 0.875 37 H 0.257 0.743 38 H -0.201 1.201 39 H -0.214 1.214 40 H 0.117 0.883 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.603 1.342 1.122 2.373 hybrid contribution 0.558 0.302 -0.143 0.651 sum -1.045 1.644 0.979 2.180 Atomic orbital electron populations 1.22461 0.94052 1.03574 1.03653 1.22442 0.94501 0.93313 0.82623 1.21881 1.02465 0.91233 1.04044 1.22461 1.01869 1.02071 0.97355 1.86566 1.69609 1.25400 1.45664 1.23728 0.76734 0.80631 0.87120 1.90585 1.36329 1.70426 1.43957 1.22401 1.03894 0.95240 0.90922 0.83288 1.23436 1.00127 0.97924 0.95286 1.22520 0.87602 0.91782 0.94400 0.86022 1.44165 1.18734 1.64901 1.03541 1.23982 0.92823 0.96005 0.91451 1.66465 1.30975 1.29738 1.02025 1.21600 0.94879 0.94252 0.93134 1.24656 0.99769 1.17027 0.98049 1.23815 1.04082 0.93045 0.92543 1.86459 1.54297 1.49201 1.47352 0.94232 0.74305 0.79252 0.86323 1.84184 1.19690 1.61429 1.04973 1.23349 1.03482 0.94393 0.94614 0.91852 0.89580 0.91795 0.91166 0.88710 0.91303 0.91798 0.89578 0.91666 0.89724 0.88822 0.73846 0.79175 0.87520 0.74303 1.20096 1.21382 0.88293 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.41 8.37 71.98 0.60 0.19 16 2 C 0.11 0.24 1.13 -10.79 -0.01 0.22 16 3 C -0.14 0.26 8.85 71.98 0.64 0.90 16 4 C -0.18 -0.40 8.37 71.98 0.60 0.20 16 5 O -0.36 -1.52 9.89 -51.37 -0.51 -2.03 16 6 C 0.47 1.85 6.80 71.24 0.48 2.33 16 7 O -0.52 -4.33 11.41 21.96 0.25 -4.08 16 8 C -0.11 0.20 4.26 -11.01 -0.05 0.15 16 9 H 0.15 -0.85 8.14 -2.39 -0.02 -0.87 16 10 C -0.13 0.23 7.43 31.12 0.23 0.46 16 11 C 0.14 -0.16 4.36 45.52 0.20 0.04 16 12 H 0.12 0.04 7.66 -2.39 -0.02 0.02 16 13 N -0.67 -0.75 5.51 -327.89 -1.81 -2.56 16 14 C 0.33 2.00 8.09 179.32 1.45 3.45 16 15 N -0.57 -4.74 9.83 -202.01 -1.99 -6.73 16 16 C 0.11 0.75 11.22 83.54 0.94 1.68 16 17 C -0.27 -1.61 5.78 24.58 0.14 -1.47 16 18 C -0.02 0.01 2.98 71.24 0.21 0.22 16 19 O -0.56 0.30 12.84 -148.98 -1.91 -1.61 16 20 Si 0.75 -0.86 31.05 68.60 2.13 1.27 16 21 S 0.05 0.31 20.57 -56.49 -1.16 -0.85 16 22 C -0.12 0.29 7.15 31.12 0.22 0.51 16 23 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 24 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 25 H 0.06 0.41 5.89 -2.39 -0.01 0.40 16 26 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.06 0.42 5.89 -2.39 -0.01 0.40 16 30 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.08 -0.03 8.10 -2.39 -0.02 -0.05 16 33 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.42 -0.87 8.85 -92.71 -0.82 -1.69 16 35 H 0.19 0.55 8.06 -2.91 -0.02 0.52 16 36 H 0.11 -0.56 7.96 -2.39 -0.02 -0.58 16 37 H 0.41 -4.64 8.74 -74.05 -0.65 -5.28 16 38 H -0.27 -1.12 7.11 99.48 0.71 -0.42 16 39 H -0.29 -1.94 7.11 99.48 0.71 -1.24 16 40 H 0.10 -0.40 8.14 -2.38 -0.02 -0.42 16 41 H 0.10 -0.05 7.42 -2.39 -0.02 -0.06 16 Total: 0.00 -18.25 350.09 0.29 -17.96 By element: Atomic # 1 Polarization: -9.89 SS G_CDS: -0.37 Total: -10.27 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 5.66 Total: 8.90 kcal Atomic # 7 Polarization: -5.49 SS G_CDS: -3.79 Total: -9.29 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -2.17 Total: -7.72 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: 2.13 Total: 1.27 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.16 Total: -0.85 kcal Total: -18.25 0.29 -17.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12626396_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.051 kcal (2) G-P(sol) polarization free energy of solvation -18.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds