Wall clock time and date at job start Mon Mar 8 2021 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33330 * 125.95564 * 2 1 4 4 C 1.50698 * 122.70706 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47383 * 44.28521 * 4 3 2 6 6 Si 1.86303 * 109.47051 * 164.28406 * 4 3 2 7 7 N 1.32117 * 114.57951 * 180.02562 * 3 2 1 8 8 C 1.29682 * 116.86736 * 359.97438 * 7 3 2 9 9 N 1.38617 * 124.94848 * 179.97438 * 8 7 3 10 10 C 1.46497 * 120.00004 * 180.02562 * 9 8 7 11 11 H 1.08996 * 112.85212 * 23.80176 * 10 9 8 12 12 C 1.53786 * 113.61457 * 154.99982 * 10 9 8 13 13 C 1.53782 * 87.08056 * 140.06600 * 12 10 9 14 14 H 1.08997 * 113.61552 * 89.11966 * 13 12 10 15 15 C 1.50707 * 113.61077 * 220.01921 * 13 12 10 16 16 O 1.20824 * 119.99832 * 359.97438 * 15 13 12 17 17 O 1.34221 * 119.99771 * 179.97438 * 15 13 12 18 18 C 1.45202 * 117.00236 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.46650 * 60.00302 * 18 17 15 20 20 C 1.52994 * 109.47473 * 180.02562 * 18 17 15 21 21 C 1.52993 * 109.47111 * 300.00526 * 18 17 15 22 22 C 1.53778 * 113.69144 * 252.53291 * 10 9 8 23 23 S 1.70963 * 110.10135 * 0.24511 * 8 7 3 24 24 H 1.08998 * 109.47352 * 84.36604 * 1 2 3 25 25 H 1.08994 * 109.47288 * 204.37219 * 1 2 3 26 26 H 1.09008 * 109.46877 * 324.37014 * 1 2 3 27 27 H 1.09002 * 109.47122 * 284.27941 * 4 3 2 28 28 H 0.96700 * 113.99822 * 59.99525 * 5 4 3 29 29 H 1.48502 * 110.00080 * 58.68109 * 6 4 3 30 30 H 1.48504 * 109.99830 * 179.97438 * 6 4 3 31 31 H 0.97001 * 119.99892 * 359.97438 * 9 8 7 32 32 H 1.08998 * 113.61201 * 25.51102 * 12 10 9 33 33 H 1.09001 * 113.60966 * 254.61017 * 12 10 9 34 34 H 1.09002 * 109.47563 * 59.99900 * 19 18 17 35 35 H 1.08999 * 109.47119 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47211 * 300.00217 * 19 18 17 37 37 H 1.09002 * 109.47481 * 59.99974 * 20 18 17 38 38 H 1.08999 * 109.46992 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.47192 * 300.00013 * 20 18 17 40 40 H 1.09007 * 109.47575 * 59.99389 * 21 18 17 41 41 H 1.08999 * 109.47123 * 179.97438 * 21 18 17 42 42 H 1.08998 * 109.47564 * 299.99617 * 21 18 17 43 43 H 1.09001 * 113.61477 * 105.45642 * 22 10 9 44 44 H 1.09006 * 113.61100 * 334.55737 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.6701 2.5755 0.9417 6 14 3.0906 3.6765 0.4762 7 7 3.5850 0.8187 -0.0005 8 6 3.9314 -0.4310 -0.0005 9 7 5.2384 -0.8928 -0.0015 10 6 5.5065 -2.3330 -0.0019 11 1 4.6801 -2.9173 -0.4067 12 6 6.8742 -2.7049 -0.5984 13 6 6.9921 -3.7489 0.5245 14 1 6.5719 -4.7202 0.2636 15 6 8.3755 -3.8475 1.1143 16 8 9.2624 -3.1420 0.6955 17 8 8.6221 -4.7190 2.1048 18 6 9.9774 -4.7603 2.6244 19 6 10.3511 -3.3860 3.1835 20 6 10.0651 -5.8055 3.7381 21 6 10.9440 -5.1329 1.4986 22 6 6.0360 -2.8633 1.3409 23 16 2.5412 -1.4261 -0.0065 24 1 -0.3634 0.1009 -1.0227 25 1 -0.3633 -0.9360 0.4241 26 1 -0.3633 0.8354 0.5987 27 1 1.3728 2.7294 -0.9952 28 1 0.9264 2.3689 1.8509 29 1 4.2245 3.5673 -0.4766 30 1 2.5627 5.0645 0.4798 31 1 5.9755 -0.2622 -0.0027 32 1 7.6120 -1.9055 -0.5307 33 1 6.8116 -3.1412 -1.5953 34 1 9.6624 -3.1204 3.9855 35 1 11.3686 -3.4167 3.5731 36 1 10.2887 -2.6415 2.3897 37 1 9.7989 -6.7845 3.3395 38 1 11.0824 -5.8361 4.1284 39 1 9.3764 -5.5404 4.5404 40 1 10.8817 -4.3885 0.7047 41 1 11.9614 -5.1634 1.8885 42 1 10.6778 -6.1120 1.1002 43 1 5.2969 -3.4274 1.9097 44 1 6.5448 -2.1071 1.9389 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12626396_15704122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:43:17 Heat of formation + Delta-G solvation = -39.212389 kcal Electronic energy + Delta-G solvation = -25692.489967 eV Core-core repulsion = 21932.566065 eV Total energy + Delta-G solvation = -3759.923902 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17031 -41.09283 -40.15391 -38.00445 -37.59913 -35.45458 -34.97553 -32.59083 -29.39303 -28.43606 -28.34715 -27.57523 -26.86931 -25.63449 -24.44754 -23.22695 -21.51612 -20.67555 -20.08762 -19.29302 -18.39668 -17.84620 -17.55477 -17.35367 -17.10354 -16.68873 -16.23102 -16.16951 -15.68065 -15.46819 -15.24569 -14.80021 -14.66718 -14.38746 -14.17174 -13.84808 -13.66915 -13.52507 -13.42321 -13.34462 -13.15841 -12.98845 -12.90614 -12.79705 -12.64763 -12.48931 -12.37106 -12.35498 -12.07475 -12.04271 -11.77301 -11.43419 -11.02892 -10.88368 -10.63648 -10.36652 -10.05057 -8.65840 -4.93209 -0.02937 0.14559 0.72746 1.12823 1.34447 1.57031 1.71471 1.81320 2.02114 2.07488 3.19210 3.25368 3.41767 3.53144 3.55197 3.62973 3.70059 3.74891 3.87684 3.92808 4.16003 4.31830 4.36560 4.47430 4.52295 4.53967 4.54654 4.61600 4.70947 4.75654 4.79618 4.81373 4.83278 4.88119 4.88628 4.91016 5.02797 5.08344 5.16648 5.19753 5.24157 5.36707 5.53438 5.65411 6.25756 6.66325 6.77390 6.93167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.241 4.241 3 C 0.049 3.951 4 C -0.029 4.029 5 O -0.539 6.539 6 Si 0.791 3.209 7 N -0.571 5.571 8 C 0.307 3.693 9 N -0.679 5.679 10 C 0.133 3.867 11 H 0.127 0.873 12 C -0.120 4.120 13 C -0.106 4.106 14 H 0.155 0.845 15 C 0.472 3.528 16 O -0.526 6.526 17 O -0.353 6.353 18 C 0.108 3.892 19 C -0.181 4.181 20 C -0.139 4.139 21 C -0.181 4.181 22 C -0.129 4.129 23 S 0.132 5.868 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.395 0.605 29 H -0.308 1.308 30 H -0.296 1.296 31 H 0.414 0.586 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 -6.140 3.561 7.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.364 4.364 3 C -0.080 4.080 4 C -0.143 4.143 5 O -0.346 6.346 6 Si 0.699 3.301 7 N -0.299 5.299 8 C -0.064 4.064 9 N -0.319 5.319 10 C 0.028 3.972 11 H 0.145 0.855 12 C -0.159 4.159 13 C -0.125 4.125 14 H 0.173 0.827 15 C 0.316 3.684 16 O -0.415 6.415 17 O -0.271 6.271 18 C 0.072 3.928 19 C -0.238 4.238 20 C -0.196 4.196 21 C -0.238 4.238 22 C -0.169 4.169 23 S 0.381 5.619 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.245 0.755 29 H -0.235 1.235 30 H -0.224 1.224 31 H 0.252 0.748 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.129 -5.987 2.700 6.569 hybrid contribution 0.368 0.941 -0.719 1.240 sum 0.497 -5.045 1.981 5.443 Atomic orbital electron populations 1.20369 0.85687 1.04315 1.03145 1.25426 1.02075 0.93125 1.15781 1.20173 0.86673 0.97725 1.03472 1.24433 0.97961 0.95461 0.96416 1.86421 1.34856 1.91780 1.21505 0.92940 0.74142 0.73216 0.89838 1.65881 1.17842 1.17822 1.28309 1.23539 0.92787 0.91626 0.98430 1.44083 1.01303 1.07185 1.79303 1.22666 0.98380 0.78998 0.97200 0.85490 1.23326 0.95721 0.97948 0.98873 1.22445 0.89049 1.02820 0.98225 0.82712 1.23795 0.91586 0.76184 0.76850 1.90599 1.47556 1.43025 1.60332 1.86560 1.34321 1.57173 1.48998 1.22408 0.78371 0.97373 0.94600 1.22462 1.03333 0.96276 1.01714 1.21880 1.04018 0.97453 0.96267 1.22464 1.00127 1.02285 0.98937 1.23504 0.97971 0.98217 0.97190 1.83710 0.95215 1.09455 1.73499 0.91533 0.90912 0.87989 0.86873 0.75456 1.23544 1.22435 0.74781 0.88957 0.88023 0.91701 0.89758 0.91860 0.91117 0.88896 0.91179 0.91849 0.89749 0.91608 0.87560 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.04 9.97 71.23 0.71 0.75 16 2 C -0.24 -0.61 6.49 24.57 0.16 -0.45 16 3 C 0.05 0.23 6.00 41.41 0.25 0.48 16 4 C -0.03 -0.09 2.74 71.24 0.20 0.11 16 5 O -0.54 0.00 10.22 -148.98 -1.52 -1.52 16 6 Si 0.79 3.20 31.88 68.60 2.19 5.38 16 7 N -0.57 -3.71 8.61 -189.86 -1.64 -5.35 16 8 C 0.31 0.83 8.24 179.32 1.48 2.30 16 9 N -0.68 0.96 5.52 -327.90 -1.81 -0.85 16 10 C 0.13 -0.81 4.23 45.52 0.19 -0.62 16 11 H 0.13 -1.07 7.05 -2.39 -0.02 -1.09 16 12 C -0.12 0.65 7.16 31.12 0.22 0.87 16 13 C -0.11 0.58 4.26 -11.01 -0.05 0.54 16 14 H 0.16 -1.59 8.14 -2.39 -0.02 -1.61 16 15 C 0.47 0.77 6.79 71.24 0.48 1.25 16 16 O -0.53 -3.61 11.40 21.97 0.25 -3.36 16 17 O -0.35 -0.72 9.89 -51.33 -0.51 -1.23 16 18 C 0.11 0.08 1.13 -10.80 -0.01 0.07 16 19 C -0.18 -0.22 8.37 71.98 0.60 0.38 16 20 C -0.14 0.46 8.85 71.98 0.64 1.09 16 21 C -0.18 -0.21 8.37 71.98 0.60 0.40 16 22 C -0.13 0.84 7.43 31.12 0.23 1.07 16 23 S 0.13 -0.03 21.68 -56.49 -1.22 -1.26 16 24 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.10 -0.08 5.67 -2.38 -0.01 -0.09 16 27 H 0.11 0.42 7.96 -2.39 -0.02 0.40 16 28 H 0.40 -2.82 8.70 -74.06 -0.64 -3.46 16 29 H -0.31 -3.85 7.11 99.48 0.71 -3.14 16 30 H -0.30 -2.68 7.11 99.48 0.71 -1.97 16 31 H 0.41 -0.46 8.85 -92.71 -0.82 -1.28 16 32 H 0.09 -0.16 7.41 -2.39 -0.02 -0.18 16 33 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.08 -0.12 8.14 -2.39 -0.02 -0.13 16 36 H 0.06 0.35 5.89 -2.38 -0.01 0.34 16 37 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.06 0.35 5.89 -2.38 -0.01 0.34 16 41 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.09 -0.32 8.09 -2.38 -0.02 -0.34 16 Total: 0.00 -16.42 366.66 1.05 -15.37 By element: Atomic # 1 Polarization: -15.04 SS G_CDS: -0.40 Total: -15.44 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.70 Total: 8.25 kcal Atomic # 7 Polarization: -2.75 SS G_CDS: -3.44 Total: -6.19 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -1.78 Total: -6.12 kcal Atomic # 14 Polarization: 3.20 SS G_CDS: 2.19 Total: 5.38 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.22 Total: -1.26 kcal Total: -16.42 1.05 -15.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12626396_15704122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.838 kcal (2) G-P(sol) polarization free energy of solvation -16.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds