Wall clock time and date at job start Mon Mar 8 2021 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47191 * 240.00006 * 2 1 3 5 5 O 1.45194 * 109.47433 * 119.99963 * 2 1 3 6 6 C 1.34638 * 117.00014 * 60.00197 * 5 2 1 7 7 O 1.21514 * 120.00056 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00255 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00016 * 179.97438 * 8 6 5 10 10 H 1.09006 * 112.85380 * 23.79937 * 9 8 6 11 11 C 1.53785 * 113.61643 * 154.99355 * 9 8 6 12 12 C 1.53782 * 87.08078 * 139.97965 * 11 9 8 13 13 H 1.09006 * 113.61161 * 89.20437 * 12 11 9 14 14 C 1.53005 * 113.61311 * 220.01996 * 12 11 9 15 15 N 1.46494 * 109.46922 * 183.47155 * 14 12 11 16 16 C 1.39003 * 120.00122 * 180.02562 * 15 14 12 17 17 N 1.32397 * 119.70833 * 180.02562 * 16 15 14 18 18 C 1.31975 * 121.62163 * 179.97438 * 17 16 15 19 19 C 1.38021 * 120.85443 * 359.97438 * 18 17 16 20 20 C 1.50706 * 120.33063 * 179.97438 * 19 18 17 21 21 O 1.42906 * 109.46702 * 120.00181 * 20 19 18 22 22 Si 1.86301 * 109.47233 * 0.02562 * 20 19 18 23 23 C 1.38879 * 119.33502 * 0.25478 * 19 18 17 24 24 C 1.38300 * 118.50135 * 359.50756 * 23 19 18 25 25 C 1.53776 * 87.17254 * 334.60955 * 12 11 9 26 26 H 1.08993 * 109.47561 * 300.00047 * 1 2 3 27 27 H 1.09004 * 109.47243 * 60.00507 * 1 2 3 28 28 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46719 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47224 * 299.99785 * 3 2 1 31 31 H 1.08994 * 109.46684 * 60.00319 * 3 2 1 32 32 H 1.08997 * 109.47165 * 300.00068 * 4 2 1 33 33 H 1.09004 * 109.47217 * 60.00113 * 4 2 1 34 34 H 1.09005 * 109.47264 * 179.97438 * 4 2 1 35 35 H 0.96996 * 120.00029 * 359.97438 * 8 6 5 36 36 H 1.09002 * 113.60924 * 25.42799 * 11 9 8 37 37 H 1.08997 * 113.61357 * 254.53234 * 11 9 8 38 38 H 1.08996 * 109.47056 * 63.47133 * 14 12 11 39 39 H 1.09000 * 109.47141 * 303.47051 * 14 12 11 40 40 H 0.97003 * 120.00417 * 0.02562 * 15 14 12 41 41 H 1.07999 * 119.56736 * 180.02562 * 18 17 16 42 42 H 1.09000 * 109.47318 * 239.99760 * 20 19 18 43 43 H 0.96696 * 113.99911 * 300.00170 * 21 20 19 44 44 H 1.48501 * 110.00188 * 58.67931 * 22 20 19 45 45 H 1.48498 * 109.99815 * 179.97438 * 22 20 19 46 46 H 1.07994 * 120.75284 * 179.74377 * 23 19 18 47 47 H 1.08004 * 120.45138 * 180.26611 * 24 23 19 48 48 H 1.09008 * 113.61076 * 139.93823 * 25 12 11 49 49 H 1.08998 * 113.61717 * 270.84169 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4171 9 6 1.6733 -4.0665 2.5836 10 1 1.4209 -4.5503 1.6399 11 6 2.6463 -4.8811 3.4524 12 6 1.4085 -5.5537 4.0693 13 1 1.0835 -6.4455 3.5333 14 6 1.5201 -5.7755 5.5790 15 7 0.3349 -6.4921 6.0562 16 6 0.2097 -6.8086 7.4039 17 7 -0.8637 -7.4568 7.8287 18 6 -1.0211 -7.7767 9.0994 19 6 -0.0642 -7.4443 10.0368 20 6 -0.2563 -7.8149 11.4849 21 8 0.8131 -8.6647 11.9049 22 14 -1.8770 -8.7111 11.6868 23 6 1.0747 -6.7597 9.6332 24 6 1.2143 -6.4426 8.2943 25 6 0.6247 -4.2865 3.6891 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1393 34 1 3.1300 -0.7209 -1.2495 35 1 2.6269 -2.2366 3.0833 36 1 3.2120 -4.2749 4.1598 37 1 3.2750 -5.5639 2.8809 38 1 1.5897 -4.8119 6.0837 39 1 2.4119 -6.3640 5.7949 40 1 -0.3627 -6.7458 5.4316 41 1 -1.9099 -8.3062 9.4095 42 1 -0.2624 -6.9107 12.0937 43 1 0.8789 -9.4900 11.4054 44 1 -1.8932 -9.9291 10.8375 45 1 -2.0780 -9.0826 13.1105 46 1 1.8360 -6.4845 10.3480 47 1 2.0894 -5.9145 7.9452 48 1 -0.3763 -4.4900 3.3086 49 1 0.6368 -3.5174 4.4615 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12628478_13915762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:53:49 Heat of formation + Delta-G solvation = -46.261469 kcal Electronic energy + Delta-G solvation = -28317.837800 eV Core-core repulsion = 24247.492451 eV Total energy + Delta-G solvation = -4070.345349 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84844 -41.38885 -40.51791 -38.26693 -37.86265 -36.50141 -35.25937 -34.14358 -33.39534 -31.68755 -28.83979 -28.33396 -28.29353 -26.96900 -26.07719 -25.01928 -24.35774 -22.70287 -22.17948 -21.43362 -20.64449 -19.10088 -18.63692 -18.57605 -17.87931 -17.43596 -17.07751 -16.77279 -16.51280 -16.39770 -16.23285 -15.82074 -15.63152 -15.39033 -15.30004 -15.15713 -14.51550 -14.43712 -14.28949 -14.00298 -13.71968 -13.61859 -13.44524 -13.38997 -13.27134 -13.04502 -12.84917 -12.83172 -12.54070 -12.40737 -12.38355 -12.19639 -11.96848 -11.87908 -11.69489 -11.30243 -11.16867 -10.96770 -10.72913 -10.52085 -10.35351 -10.17817 -8.71798 -4.94299 0.26070 0.43545 1.18978 1.31756 1.61313 1.85870 1.98619 2.04224 2.86969 3.09846 3.21658 3.30293 3.40732 3.53683 3.59331 3.62668 3.77158 3.78428 3.82805 3.96492 3.97217 4.01719 4.11371 4.17831 4.32753 4.41659 4.46480 4.51559 4.55295 4.55958 4.58186 4.62403 4.71964 4.74747 4.77560 4.79929 4.84009 4.86734 4.92563 5.01447 5.03645 5.08955 5.29451 5.31665 5.35863 5.46700 5.51234 5.59580 5.97766 6.40105 6.42685 6.51576 7.16914 7.41526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.566 6.566 8 N -0.702 5.702 9 C 0.140 3.860 10 H 0.121 0.879 11 C -0.135 4.135 12 C -0.120 4.120 13 H 0.105 0.895 14 C 0.140 3.860 15 N -0.722 5.722 16 C 0.408 3.592 17 N -0.540 5.540 18 C 0.157 3.843 19 C -0.235 4.235 20 C -0.059 4.059 21 O -0.532 6.532 22 Si 0.678 3.322 23 C -0.005 4.005 24 C -0.239 4.239 25 C -0.148 4.148 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.406 0.594 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.407 0.593 41 H 0.155 0.845 42 H 0.116 0.884 43 H 0.375 0.625 44 H -0.259 1.259 45 H -0.256 1.256 46 H 0.135 0.865 47 H 0.132 0.868 48 H 0.078 0.922 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 2.676 -0.551 3.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.036 3.964 10 H 0.139 0.861 11 C -0.173 4.173 12 C -0.140 4.140 13 H 0.123 0.877 14 C 0.015 3.985 15 N -0.355 5.355 16 C 0.172 3.828 17 N -0.257 5.257 18 C -0.001 4.001 19 C -0.240 4.240 20 C -0.170 4.170 21 O -0.338 6.338 22 Si 0.579 3.421 23 C -0.031 4.031 24 C -0.264 4.264 25 C -0.187 4.187 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.243 0.757 41 H 0.172 0.828 42 H 0.134 0.866 43 H 0.223 0.777 44 H -0.183 1.183 45 H -0.181 1.181 46 H 0.153 0.847 47 H 0.150 0.850 48 H 0.096 0.904 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.610 2.129 -1.048 2.450 hybrid contribution 1.572 -0.324 0.360 1.645 sum 2.182 1.805 -0.688 2.915 Atomic orbital electron populations 1.22519 0.93833 1.05047 1.02714 1.22118 0.94454 0.91566 0.81862 1.21880 1.02324 0.92359 1.03345 1.22523 1.01593 1.03437 0.96560 1.86307 1.71477 1.23484 1.46739 1.18183 0.78677 0.80645 0.82124 1.90917 1.40861 1.70413 1.43324 1.44748 1.55508 1.12144 1.23611 1.22563 0.95606 0.78982 0.99214 0.86110 1.23370 0.96483 0.98763 0.98733 1.22562 0.98014 0.98632 0.94764 0.87728 1.21386 0.87600 0.96356 0.93114 1.44479 1.23875 1.62372 1.04724 1.18398 0.89368 0.89404 0.85668 1.67157 1.23051 1.17611 1.17841 1.22212 0.96797 0.93998 0.87045 1.20926 0.98411 1.07367 0.97334 1.24753 1.00371 0.99043 0.92785 1.86589 1.50968 1.33932 1.62356 0.95167 0.81552 0.84212 0.81177 1.21186 0.95630 0.91354 0.94919 1.21444 1.01484 1.09623 0.93878 1.23659 0.99309 0.97050 0.98650 0.92127 0.90931 0.89433 0.91399 0.89921 0.91401 0.89447 0.90925 0.92125 0.75836 0.88847 0.89755 0.91506 0.91470 0.75739 0.82827 0.86577 0.77725 1.18333 1.18062 0.84674 0.84992 0.90358 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.22 8.37 37.15 0.31 0.09 16 2 C 0.14 0.16 1.13 -90.62 -0.10 0.06 16 3 C -0.14 0.12 8.85 37.16 0.33 0.45 16 4 C -0.18 -0.21 8.37 37.16 0.31 0.10 16 5 O -0.37 -0.78 9.94 -40.32 -0.40 -1.18 16 6 C 0.65 1.53 8.06 54.06 0.44 1.96 16 7 O -0.57 -2.68 11.48 -19.28 -0.22 -2.90 16 8 N -0.70 0.62 5.36 -57.84 -0.31 0.31 16 9 C 0.14 -0.28 4.24 -67.03 -0.28 -0.57 16 10 H 0.12 -0.06 7.46 -51.93 -0.39 -0.44 16 11 C -0.13 0.57 7.40 -25.92 -0.19 0.38 16 12 C -0.12 0.47 3.75 -89.81 -0.34 0.14 16 13 H 0.10 -0.41 8.14 -51.93 -0.42 -0.83 16 14 C 0.14 -0.45 4.72 -4.04 -0.02 -0.47 16 15 N -0.72 0.65 5.73 -60.42 -0.35 0.31 16 16 C 0.41 0.55 7.65 -155.02 -1.19 -0.63 16 17 N -0.54 -1.42 10.39 -12.44 -0.13 -1.55 16 18 C 0.16 0.18 9.84 -17.57 -0.17 0.01 16 19 C -0.24 -0.12 5.39 -104.46 -0.56 -0.68 16 20 C -0.06 0.01 2.84 36.01 0.10 0.11 16 21 O -0.53 -0.63 12.78 -35.23 -0.45 -1.08 16 22 Si 0.68 -0.55 29.82 -169.99 -5.07 -5.62 16 23 C -0.01 0.00 9.77 -39.32 -0.38 -0.39 16 24 C -0.24 -0.08 9.33 -39.22 -0.37 -0.44 16 25 C -0.15 0.40 7.45 -25.83 -0.19 0.21 16 26 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.09 0.29 5.88 -51.93 -0.31 -0.01 16 29 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 31 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 32 H 0.09 0.28 5.88 -51.93 -0.31 -0.02 16 33 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 34 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.41 -1.19 8.84 -40.82 -0.36 -1.55 16 36 H 0.09 -0.48 8.08 -51.93 -0.42 -0.90 16 37 H 0.08 -0.35 8.14 -51.93 -0.42 -0.78 16 38 H 0.07 -0.23 7.66 -51.93 -0.40 -0.63 16 39 H 0.07 -0.23 7.93 -51.93 -0.41 -0.64 16 40 H 0.41 -0.46 8.60 -40.82 -0.35 -0.81 16 41 H 0.16 -0.11 4.88 -52.49 -0.26 -0.37 16 42 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 43 H 0.38 -0.54 8.70 45.56 0.40 -0.14 16 44 H -0.26 -0.32 7.11 56.52 0.40 0.08 16 45 H -0.26 -0.62 7.11 56.52 0.40 -0.22 16 46 H 0.14 -0.09 8.06 -52.49 -0.42 -0.51 16 47 H 0.13 -0.21 6.71 -52.48 -0.35 -0.56 16 48 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 49 H 0.09 -0.23 7.92 -51.93 -0.41 -0.64 16 LS Contribution 392.83 15.07 5.92 5.92 Total: 0.00 -7.57 392.83 -11.14 -18.71 By element: Atomic # 1 Polarization: -5.40 SS G_CDS: -7.82 Total: -13.23 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.31 Total: 0.31 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -0.79 Total: -0.93 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -1.07 Total: -5.16 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: -5.07 Total: -5.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -7.57 -11.14 -18.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12628478_13915762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.552 kcal (2) G-P(sol) polarization free energy of solvation -7.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds