Wall clock time and date at job start Mon Mar 8 2021 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47191 * 240.00006 * 2 1 3 5 5 O 1.45194 * 109.47433 * 119.99963 * 2 1 3 6 6 C 1.34638 * 117.00014 * 60.00197 * 5 2 1 7 7 O 1.21514 * 120.00056 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00255 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00016 * 179.97438 * 8 6 5 10 10 H 1.09006 * 112.85380 * 23.79937 * 9 8 6 11 11 C 1.53785 * 113.61643 * 154.99355 * 9 8 6 12 12 C 1.53782 * 87.08078 * 139.97965 * 11 9 8 13 13 H 1.09006 * 113.61161 * 89.20437 * 12 11 9 14 14 C 1.53005 * 113.61311 * 220.01996 * 12 11 9 15 15 N 1.46494 * 109.46922 * 183.47155 * 14 12 11 16 16 C 1.39003 * 120.00122 * 180.02562 * 15 14 12 17 17 N 1.32397 * 119.70833 * 180.02562 * 16 15 14 18 18 C 1.31975 * 121.62163 * 179.97438 * 17 16 15 19 19 C 1.38021 * 120.85443 * 359.97438 * 18 17 16 20 20 C 1.50706 * 120.33063 * 179.97438 * 19 18 17 21 21 O 1.42906 * 109.46702 * 120.00181 * 20 19 18 22 22 Si 1.86301 * 109.47233 * 0.02562 * 20 19 18 23 23 C 1.38879 * 119.33502 * 0.25478 * 19 18 17 24 24 C 1.38300 * 118.50135 * 359.50756 * 23 19 18 25 25 C 1.53776 * 87.17254 * 334.60955 * 12 11 9 26 26 H 1.08993 * 109.47561 * 300.00047 * 1 2 3 27 27 H 1.09004 * 109.47243 * 60.00507 * 1 2 3 28 28 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46719 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47224 * 299.99785 * 3 2 1 31 31 H 1.08994 * 109.46684 * 60.00319 * 3 2 1 32 32 H 1.08997 * 109.47165 * 300.00068 * 4 2 1 33 33 H 1.09004 * 109.47217 * 60.00113 * 4 2 1 34 34 H 1.09005 * 109.47264 * 179.97438 * 4 2 1 35 35 H 0.96996 * 120.00029 * 359.97438 * 8 6 5 36 36 H 1.09002 * 113.60924 * 25.42799 * 11 9 8 37 37 H 1.08997 * 113.61357 * 254.53234 * 11 9 8 38 38 H 1.08996 * 109.47056 * 63.47133 * 14 12 11 39 39 H 1.09000 * 109.47141 * 303.47051 * 14 12 11 40 40 H 0.97003 * 120.00417 * 0.02562 * 15 14 12 41 41 H 1.07999 * 119.56736 * 180.02562 * 18 17 16 42 42 H 1.09000 * 109.47318 * 239.99760 * 20 19 18 43 43 H 0.96696 * 113.99911 * 300.00170 * 21 20 19 44 44 H 1.48501 * 110.00188 * 58.67931 * 22 20 19 45 45 H 1.48498 * 109.99815 * 179.97438 * 22 20 19 46 46 H 1.07994 * 120.75284 * 179.74377 * 23 19 18 47 47 H 1.08004 * 120.45138 * 180.26611 * 24 23 19 48 48 H 1.09008 * 113.61076 * 139.93823 * 25 12 11 49 49 H 1.08998 * 113.61717 * 270.84169 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4171 9 6 1.6733 -4.0665 2.5836 10 1 1.4209 -4.5503 1.6399 11 6 2.6463 -4.8811 3.4524 12 6 1.4085 -5.5537 4.0693 13 1 1.0835 -6.4455 3.5333 14 6 1.5201 -5.7755 5.5790 15 7 0.3349 -6.4921 6.0562 16 6 0.2097 -6.8086 7.4039 17 7 -0.8637 -7.4568 7.8287 18 6 -1.0211 -7.7767 9.0994 19 6 -0.0642 -7.4443 10.0368 20 6 -0.2563 -7.8149 11.4849 21 8 0.8131 -8.6647 11.9049 22 14 -1.8770 -8.7111 11.6868 23 6 1.0747 -6.7597 9.6332 24 6 1.2143 -6.4426 8.2943 25 6 0.6247 -4.2865 3.6891 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1393 34 1 3.1300 -0.7209 -1.2495 35 1 2.6269 -2.2366 3.0833 36 1 3.2120 -4.2749 4.1598 37 1 3.2750 -5.5639 2.8809 38 1 1.5897 -4.8119 6.0837 39 1 2.4119 -6.3640 5.7949 40 1 -0.3627 -6.7458 5.4316 41 1 -1.9099 -8.3062 9.4095 42 1 -0.2624 -6.9107 12.0937 43 1 0.8789 -9.4900 11.4054 44 1 -1.8932 -9.9291 10.8375 45 1 -2.0780 -9.0826 13.1105 46 1 1.8360 -6.4845 10.3480 47 1 2.0894 -5.9145 7.9452 48 1 -0.3763 -4.4900 3.3086 49 1 0.6368 -3.5174 4.4615 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12628478_13915762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:53:48 Heat of formation + Delta-G solvation = -45.398352 kcal Electronic energy + Delta-G solvation = -28317.800373 eV Core-core repulsion = 24247.492451 eV Total energy + Delta-G solvation = -4070.307922 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.91367 -41.38416 -40.39899 -38.28624 -37.92853 -36.47051 -35.34612 -34.14333 -33.40646 -31.65136 -28.72585 -28.39034 -28.31924 -26.73278 -26.05231 -24.97476 -24.36128 -22.70004 -22.11527 -21.41335 -20.55758 -19.16434 -18.60578 -18.54204 -17.87636 -17.47467 -17.19389 -16.67563 -16.45172 -16.34647 -16.21884 -15.71917 -15.67819 -15.39628 -15.30533 -15.11841 -14.49341 -14.46031 -14.35374 -13.98455 -13.51709 -13.43890 -13.39027 -13.34505 -13.22386 -13.01358 -12.91649 -12.88458 -12.54048 -12.44729 -12.39410 -12.11856 -12.05503 -11.70100 -11.52861 -11.41251 -11.12968 -11.07238 -10.72660 -10.53081 -10.38469 -10.14647 -8.66433 -4.91045 0.25416 0.42669 1.17308 1.34514 1.60785 1.72209 1.96600 2.15024 2.85525 3.14419 3.42932 3.45573 3.52535 3.65643 3.72320 3.76198 3.76715 3.80228 3.81045 3.92553 4.05008 4.15187 4.17250 4.36716 4.42966 4.52370 4.58968 4.61975 4.65575 4.67241 4.74343 4.74794 4.78800 4.80485 4.83556 4.85693 4.86566 4.98385 5.02463 5.06229 5.10098 5.19807 5.24781 5.30476 5.32579 5.50277 5.56405 5.59594 6.05833 6.39829 6.50639 6.56266 7.17544 7.33407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.689 5.689 9 C 0.131 3.869 10 H 0.101 0.899 11 C -0.120 4.120 12 C -0.109 4.109 13 H 0.104 0.896 14 C 0.141 3.859 15 N -0.720 5.720 16 C 0.393 3.607 17 N -0.568 5.568 18 C 0.145 3.855 19 C -0.236 4.236 20 C -0.061 4.061 21 O -0.549 6.549 22 Si 0.754 3.246 23 C -0.012 4.012 24 C -0.241 4.241 25 C -0.145 4.145 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.406 0.594 41 H 0.165 0.835 42 H 0.126 0.874 43 H 0.384 0.616 44 H -0.286 1.286 45 H -0.300 1.300 46 H 0.146 0.854 47 H 0.151 0.849 48 H 0.064 0.936 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 3.577 -0.253 4.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.348 5.348 9 C 0.027 3.973 10 H 0.119 0.881 11 C -0.158 4.158 12 C -0.128 4.128 13 H 0.123 0.877 14 C 0.017 3.983 15 N -0.352 5.352 16 C 0.157 3.843 17 N -0.286 5.286 18 C -0.012 4.012 19 C -0.242 4.242 20 C -0.171 4.171 21 O -0.357 6.357 22 Si 0.660 3.340 23 C -0.038 4.038 24 C -0.266 4.266 25 C -0.184 4.184 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.255 0.745 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.241 0.759 41 H 0.182 0.818 42 H 0.144 0.856 43 H 0.233 0.767 44 H -0.213 1.213 45 H -0.228 1.228 46 H 0.164 0.836 47 H 0.169 0.831 48 H 0.082 0.918 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.743 3.048 -0.752 3.591 hybrid contribution 1.221 -0.630 0.257 1.398 sum 2.965 2.418 -0.495 3.857 Atomic orbital electron populations 1.22468 0.94127 1.03636 1.03470 1.22341 0.94396 0.92618 0.81571 1.21891 1.02481 0.90869 1.04225 1.22472 1.01655 1.02217 0.97353 1.86311 1.71531 1.23398 1.47210 1.18477 0.78653 0.80773 0.82583 1.90903 1.42294 1.70958 1.44585 1.44784 1.54866 1.12322 1.22820 1.22653 0.97208 0.78532 0.98874 0.88079 1.23330 0.96032 0.98221 0.98226 1.22450 0.97808 0.97999 0.94525 0.87735 1.21498 0.87015 0.96606 0.93178 1.44624 1.24437 1.62124 1.04038 1.18677 0.89461 0.89555 0.86609 1.67155 1.24098 1.18728 1.18586 1.22431 0.97486 0.94278 0.86964 1.20955 0.98454 1.07386 0.97382 1.24874 1.00210 0.99419 0.92637 1.86559 1.51525 1.34685 1.62914 0.94258 0.80350 0.82302 0.77115 1.21400 0.95813 0.91210 0.95336 1.21654 1.01801 1.09426 0.93693 1.23625 0.98526 0.97883 0.98334 0.91983 0.89523 0.91850 0.91124 0.88371 0.91191 0.91825 0.89531 0.91885 0.74500 0.87066 0.89248 0.90694 0.90633 0.75874 0.81827 0.85623 0.76651 1.21285 1.22800 0.83628 0.83087 0.91760 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 2 C 0.13 0.34 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.33 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 5 O -0.37 -1.80 9.94 -55.47 -0.55 -2.35 16 6 C 0.64 3.75 8.06 129.79 1.05 4.80 16 7 O -0.60 -6.89 11.48 19.80 0.23 -6.67 16 8 N -0.69 0.99 5.36 -567.31 -3.04 -2.05 16 9 C 0.13 -0.47 4.24 45.58 0.19 -0.28 16 10 H 0.10 0.08 7.46 -2.38 -0.02 0.06 16 11 C -0.12 1.13 7.40 31.12 0.23 1.36 16 12 C -0.11 0.91 3.75 -10.27 -0.04 0.87 16 13 H 0.10 -0.83 8.14 -2.38 -0.02 -0.85 16 14 C 0.14 -1.07 4.72 86.38 0.41 -0.66 16 15 N -0.72 1.51 5.73 -345.08 -1.98 -0.46 16 16 C 0.39 0.99 7.65 133.07 1.02 2.01 16 17 N -0.57 -3.21 10.39 -193.26 -2.01 -5.22 16 18 C 0.15 0.38 9.84 84.62 0.83 1.21 16 19 C -0.24 -0.20 5.39 -19.76 -0.11 -0.30 16 20 C -0.06 0.04 2.84 71.24 0.20 0.24 16 21 O -0.55 -1.22 12.78 -148.98 -1.90 -3.12 16 22 Si 0.75 -0.92 29.82 68.60 2.05 1.13 16 23 C -0.01 0.00 9.77 22.44 0.22 0.22 16 24 C -0.24 0.05 9.33 22.50 0.21 0.26 16 25 C -0.14 0.74 7.45 31.18 0.23 0.98 16 26 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 28 H 0.06 0.54 5.88 -2.38 -0.01 0.53 16 29 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.10 -0.54 8.14 -2.38 -0.02 -0.56 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 33 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 34 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 35 H 0.42 -2.65 8.84 -92.71 -0.82 -3.47 16 36 H 0.11 -1.40 8.08 -2.39 -0.02 -1.42 16 37 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H 0.07 -0.65 7.66 -2.39 -0.02 -0.67 16 39 H 0.08 -0.65 7.93 -2.39 -0.02 -0.67 16 40 H 0.41 -0.79 8.60 -92.71 -0.80 -1.59 16 41 H 0.17 -0.18 4.88 -2.91 -0.01 -0.19 16 42 H 0.13 -0.33 7.96 -2.39 -0.02 -0.35 16 43 H 0.38 -1.06 8.70 -74.06 -0.64 -1.71 16 44 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 45 H -0.30 -1.86 7.11 99.48 0.71 -1.15 16 46 H 0.15 -0.34 8.06 -2.91 -0.02 -0.37 16 47 H 0.15 -0.74 6.71 -2.91 -0.02 -0.76 16 48 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 49 H 0.09 -0.52 7.92 -2.39 -0.02 -0.54 16 Total: 0.00 -19.16 392.83 -2.17 -21.34 By element: Atomic # 1 Polarization: -13.45 SS G_CDS: -1.24 Total: -14.69 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.28 Total: 12.09 kcal Atomic # 7 Polarization: -0.71 SS G_CDS: -7.03 Total: -7.73 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -2.23 Total: -12.14 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.05 Total: 1.13 kcal Total: -19.16 -2.17 -21.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12628478_13915762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.063 kcal (2) G-P(sol) polarization free energy of solvation -19.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds