Wall clock time and date at job start Mon Mar 8 2021 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47774 * 2 1 4 4 C 1.53006 * 109.46761 * 239.99643 * 2 1 3 5 5 O 1.45205 * 109.46882 * 120.00557 * 2 1 3 6 6 C 1.34630 * 117.00296 * 59.99147 * 5 2 1 7 7 O 1.21507 * 120.00175 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00006 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00120 * 180.02562 * 8 6 5 10 10 H 1.08999 * 112.85142 * 336.19380 * 9 8 6 11 11 C 1.53960 * 113.53863 * 107.50428 * 9 8 6 12 12 C 1.53772 * 87.01931 * 89.18708 * 11 9 8 13 13 H 1.09000 * 113.61664 * 270.76961 * 12 11 9 14 14 C 1.53004 * 113.61304 * 139.95011 * 12 11 9 15 15 N 1.46497 * 109.47040 * 85.86523 * 14 12 11 16 16 C 1.38611 * 120.00112 * 180.02562 * 15 14 12 17 17 N 1.29688 * 124.95092 * 359.97438 * 16 15 14 18 18 C 1.32116 * 116.86560 * 180.02562 * 17 16 15 19 19 C 1.33326 * 114.58306 * 359.97438 * 18 17 16 20 20 C 1.50699 * 125.95303 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47152 * 300.00076 * 20 19 18 22 22 Si 1.86293 * 109.47431 * 179.97438 * 20 19 18 23 23 S 1.70972 * 124.95043 * 180.32851 * 16 15 14 24 24 C 1.53782 * 113.61432 * 204.99897 * 9 8 6 25 25 H 1.09005 * 109.46750 * 300.00600 * 1 2 3 26 26 H 1.09004 * 109.46685 * 59.99585 * 1 2 3 27 27 H 1.08998 * 109.47687 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47368 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46861 * 300.00195 * 3 2 1 30 30 H 1.09004 * 109.46989 * 59.99637 * 3 2 1 31 31 H 1.09002 * 109.47464 * 300.00127 * 4 2 1 32 32 H 1.08998 * 109.46470 * 60.00847 * 4 2 1 33 33 H 1.09005 * 109.46945 * 180.02562 * 4 2 1 34 34 H 0.97008 * 119.99975 * 359.97438 * 8 6 5 35 35 H 1.08995 * 113.66498 * 334.65620 * 11 9 8 36 36 H 1.09004 * 113.61310 * 203.71049 * 11 9 8 37 37 H 1.09000 * 109.47073 * 325.86461 * 14 12 11 38 38 H 1.09003 * 109.47346 * 205.85906 * 14 12 11 39 39 H 0.97004 * 120.00046 * 359.97438 * 15 14 12 40 40 H 1.08006 * 122.70903 * 179.97438 * 18 17 16 41 41 H 1.09008 * 109.47393 * 59.99471 * 20 19 18 42 42 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 43 43 H 1.48501 * 109.99918 * 298.67862 * 22 20 19 44 44 H 1.48506 * 109.99973 * 59.99460 * 22 20 19 45 45 H 1.09005 * 113.61720 * 156.33553 * 24 9 8 46 46 H 1.08997 * 113.61648 * 25.43184 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6521 -1.9723 1.3383 7 8 0.9514 -2.5097 0.5036 8 7 2.0670 -2.6655 2.4172 9 6 1.6737 -4.0669 2.5831 10 1 0.7597 -4.3167 2.0443 11 6 2.8250 -5.0610 2.3450 12 6 3.1490 -4.9204 3.8416 13 1 3.8451 -4.1115 4.0636 14 6 3.5386 -6.2399 4.5110 15 7 4.9733 -6.4745 4.3296 16 6 5.5605 -7.6159 4.8529 17 7 4.9333 -8.5362 5.5174 18 6 5.6523 -9.5590 5.9444 19 6 6.9455 -9.4997 5.6255 20 6 7.9922 -10.5240 5.9805 21 8 8.0746 -10.6481 7.4018 22 14 9.6431 -9.9842 5.3069 23 16 7.2188 -8.0113 4.7237 24 6 1.6738 -4.5375 4.0472 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4423 -0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -1.7490 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7218 -1.2491 34 1 2.6267 -2.2367 3.0834 35 1 3.6072 -4.6760 1.6909 36 1 2.4890 -6.0588 2.0628 37 1 2.9768 -7.0568 4.0581 38 1 3.3107 -6.1885 5.5757 39 1 5.5121 -5.8315 3.8427 40 1 5.2268 -10.3772 6.5066 41 1 7.7205 -11.4866 5.5470 42 1 8.7304 -11.2917 7.7031 43 1 9.5792 -9.8828 3.8268 44 1 10.0252 -8.6728 5.8898 45 1 1.0225 -5.3920 4.2313 46 1 1.5281 -3.7305 4.7652 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12628558_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:54:05 Heat of formation + Delta-G solvation = -33.955788 kcal Electronic energy + Delta-G solvation = -26940.967035 eV Core-core repulsion = 22960.307546 eV Total energy + Delta-G solvation = -3980.659489 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00118 -40.93914 -40.42260 -38.16929 -37.80437 -36.59344 -35.34908 -34.00325 -31.70426 -29.22349 -28.41177 -28.34351 -26.81638 -26.41837 -24.99136 -24.04804 -23.18810 -21.23791 -20.78762 -20.48069 -19.64327 -19.28097 -18.42474 -17.68141 -17.57203 -17.24992 -16.87055 -16.44909 -16.30384 -15.87354 -15.72564 -15.57802 -15.42834 -15.18328 -14.91366 -14.56678 -14.52802 -14.33183 -13.95060 -13.64078 -13.39594 -13.31065 -13.05972 -12.96210 -12.91225 -12.90296 -12.55014 -12.53561 -12.38090 -12.17697 -12.02097 -11.72798 -11.53222 -11.44140 -11.17470 -11.13254 -10.78827 -10.43502 -10.23650 -10.22342 -8.83910 -5.19558 -0.19104 -0.04524 0.50616 1.07974 1.23595 1.56640 1.67412 1.86242 1.92190 2.06319 3.05980 3.36339 3.41311 3.53483 3.59388 3.69705 3.72837 3.76858 3.78966 3.89990 3.97558 4.19256 4.40351 4.48733 4.50166 4.55912 4.57053 4.61510 4.63780 4.72179 4.73001 4.75831 4.78884 4.83502 4.85126 4.89922 4.98653 5.03970 5.04980 5.13991 5.22702 5.27590 5.43573 5.57147 5.72277 6.02369 6.32888 6.84880 6.92664 7.28261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.593 6.593 8 N -0.683 5.683 9 C 0.130 3.870 10 H 0.092 0.908 11 C -0.144 4.144 12 C -0.112 4.112 13 H 0.111 0.889 14 C 0.148 3.852 15 N -0.682 5.682 16 C 0.327 3.673 17 N -0.572 5.572 18 C 0.111 3.889 19 C -0.275 4.275 20 C -0.023 4.023 21 O -0.563 6.563 22 Si 0.756 3.244 23 S 0.049 5.951 24 C -0.120 4.120 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.417 0.583 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.423 0.577 40 H 0.189 0.811 41 H 0.106 0.894 42 H 0.405 0.595 43 H -0.274 1.274 44 H -0.286 1.286 45 H 0.112 0.888 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -0.036 0.939 3.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.484 6.484 8 N -0.342 5.342 9 C 0.026 3.974 10 H 0.110 0.890 11 C -0.183 4.183 12 C -0.131 4.131 13 H 0.129 0.871 14 C 0.023 3.977 15 N -0.322 5.322 16 C -0.044 4.044 17 N -0.299 5.299 18 C -0.039 4.039 19 C -0.397 4.397 20 C -0.136 4.136 21 O -0.374 6.374 22 Si 0.660 3.340 23 S 0.297 5.703 24 C -0.159 4.159 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.254 0.746 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.262 0.738 40 H 0.206 0.794 41 H 0.124 0.876 42 H 0.257 0.743 43 H -0.200 1.200 44 H -0.213 1.213 45 H 0.130 0.870 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.026 1.415 -0.340 3.358 hybrid contribution -0.541 -0.227 0.396 0.708 sum 2.485 1.188 0.056 2.755 Atomic orbital electron populations 1.22477 0.94011 1.03698 1.03562 1.22359 0.94484 0.92573 0.81455 1.21892 1.02449 0.90850 1.04290 1.22475 1.01608 1.02237 0.97398 1.86309 1.71505 1.23245 1.47319 1.18331 0.78570 0.80729 0.82484 1.90911 1.42235 1.71044 1.44172 1.44357 1.54959 1.11804 1.23075 1.21878 0.98585 0.78113 0.98839 0.88950 1.23575 0.98343 1.00069 0.96290 1.22831 0.98143 0.96787 0.95341 0.87129 1.21440 0.78532 0.96922 1.00791 1.44170 1.10122 1.19038 1.58905 1.24005 0.92805 0.92437 0.95190 1.66481 1.37538 1.05048 1.20785 1.21584 0.88980 0.96181 0.97195 1.24651 0.98809 1.01559 1.14700 1.23838 1.04343 0.98643 0.86775 1.86460 1.65180 1.66875 1.18845 0.94219 0.79365 0.82809 0.77622 1.84110 1.08768 1.19857 1.57558 1.23287 0.95422 1.02621 0.94560 0.91884 0.89456 0.91799 0.91185 0.88302 0.91133 0.91822 0.89457 0.91966 0.74592 0.91363 0.88464 0.91640 0.91640 0.73848 0.79396 0.87646 0.74325 1.20049 1.21269 0.86963 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 2 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 3 C -0.14 0.31 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 5 O -0.37 -1.87 9.94 -55.39 -0.55 -2.42 16 6 C 0.65 3.97 8.06 129.79 1.05 5.02 16 7 O -0.59 -7.01 11.48 19.82 0.23 -6.78 16 8 N -0.68 0.49 5.26 -567.33 -2.99 -2.49 16 9 C 0.13 -0.30 4.33 45.58 0.20 -0.10 16 10 H 0.09 0.17 7.46 -2.39 -0.02 0.16 16 11 C -0.14 0.57 7.44 31.18 0.23 0.80 16 12 C -0.11 0.76 3.62 -10.27 -0.04 0.73 16 13 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 14 C 0.15 -0.37 5.77 86.38 0.50 0.13 16 15 N -0.68 0.00 5.71 -351.00 -2.01 -2.00 16 16 C 0.33 2.03 8.09 179.32 1.45 3.48 16 17 N -0.57 -5.31 10.14 -202.02 -2.05 -7.36 16 18 C 0.11 0.84 11.22 83.54 0.94 1.77 16 19 C -0.27 -1.75 5.78 24.57 0.14 -1.61 16 20 C -0.02 0.00 2.98 71.24 0.21 0.21 16 21 O -0.56 0.07 12.85 -148.98 -1.91 -1.84 16 22 Si 0.76 -0.82 31.05 68.60 2.13 1.31 16 23 S 0.05 0.31 20.57 -56.49 -1.16 -0.85 16 24 C -0.12 0.84 7.39 31.12 0.23 1.07 16 25 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 26 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 27 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 28 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.19 16 31 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 32 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 34 H 0.42 -2.23 8.81 -92.70 -0.82 -3.05 16 35 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.10 -0.34 7.92 -2.38 -0.02 -0.35 16 37 H 0.07 -0.03 7.87 -2.39 -0.02 -0.05 16 38 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.42 -1.71 8.60 -92.70 -0.80 -2.51 16 40 H 0.19 0.74 8.06 -2.91 -0.02 0.71 16 41 H 0.11 -0.50 7.96 -2.38 -0.02 -0.52 16 42 H 0.41 -4.50 8.74 -74.06 -0.65 -5.15 16 43 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 44 H -0.29 -1.88 7.11 99.48 0.71 -1.18 16 45 H 0.11 -0.88 8.10 -2.38 -0.02 -0.90 16 46 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 Total: 0.00 -21.75 387.48 -2.78 -24.53 By element: Atomic # 1 Polarization: -13.73 SS G_CDS: -1.21 Total: -14.94 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.74 Total: 12.85 kcal Atomic # 7 Polarization: -4.82 SS G_CDS: -7.04 Total: -11.86 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -2.24 Total: -11.04 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.13 Total: 1.31 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.16 Total: -0.85 kcal Total: -21.75 -2.78 -24.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12628558_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.426 kcal (2) G-P(sol) polarization free energy of solvation -21.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds