Wall clock time and date at job start Mon Mar 8 2021 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33331 * 125.95218 * 2 1 4 4 C 1.50700 * 122.70958 * 0.04700 * 3 2 1 5 5 O 1.42899 * 109.47036 * 30.02245 * 4 3 2 6 6 Si 1.86302 * 109.47135 * 150.01970 * 4 3 2 7 7 N 1.32115 * 114.58076 * 180.02562 * 3 2 1 8 8 C 1.29694 * 116.86485 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94841 * 179.97438 * 8 7 3 10 10 C 1.46493 * 120.00201 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47610 * 179.97438 * 10 9 8 12 12 H 1.08998 * 112.84728 * 316.19599 * 11 10 9 13 13 C 1.53780 * 113.61722 * 87.49817 * 11 10 9 14 14 C 1.53776 * 87.08325 * 139.98217 * 13 11 10 15 15 H 1.08995 * 113.69602 * 220.00522 * 14 13 11 16 16 N 1.46504 * 113.61068 * 89.11853 * 14 13 11 17 17 C 1.34773 * 119.99986 * 107.50627 * 16 14 13 18 18 O 1.21506 * 120.00098 * 359.97438 * 17 16 14 19 19 O 1.34637 * 119.99788 * 179.97438 * 17 16 14 20 20 C 1.45209 * 116.99977 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.46801 * 59.99974 * 20 19 17 22 22 C 1.52998 * 109.46995 * 179.97438 * 20 19 17 23 23 C 1.52999 * 109.47030 * 299.99899 * 20 19 17 24 24 C 1.53781 * 113.61748 * 184.99826 * 11 10 9 25 25 S 1.70958 * 110.10068 * 359.97438 * 8 7 3 26 26 H 1.08996 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46992 * 299.97427 * 1 2 3 28 28 H 1.09003 * 109.46820 * 59.96627 * 1 2 3 29 29 H 1.08998 * 109.47434 * 270.01967 * 4 3 2 30 30 H 0.96699 * 114.00388 * 60.00296 * 5 4 3 31 31 H 1.48499 * 110.00163 * 179.97438 * 6 4 3 32 32 H 1.48497 * 110.00143 * 301.32371 * 6 4 3 33 33 H 0.97000 * 120.00085 * 359.97438 * 9 8 7 34 34 H 1.09010 * 109.46920 * 299.99702 * 10 9 8 35 35 H 1.08997 * 109.47329 * 59.99647 * 10 9 8 36 36 H 1.08999 * 113.61606 * 254.53474 * 13 11 10 37 37 H 1.09008 * 113.61351 * 25.43431 * 13 11 10 38 38 H 0.97000 * 119.99935 * 287.50141 * 16 14 13 39 39 H 1.08993 * 109.47669 * 60.00174 * 21 20 19 40 40 H 1.09004 * 109.46409 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47111 * 299.99495 * 21 20 19 42 42 H 1.09004 * 109.47000 * 60.00175 * 22 20 19 43 43 H 1.09004 * 109.46972 * 179.97438 * 22 20 19 44 44 H 1.09002 * 109.47496 * 299.99997 * 22 20 19 45 45 H 1.09004 * 109.46930 * 59.99675 * 23 20 19 46 46 H 1.08991 * 109.47150 * 180.02562 * 23 20 19 47 47 H 1.09004 * 109.47119 * 299.99919 * 23 20 19 48 48 H 1.09001 * 113.61539 * 334.56313 * 24 11 10 49 49 H 1.09002 * 113.61504 * 105.47089 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 0.0010 5 8 0.4820 2.5019 0.6760 6 14 2.9332 3.6146 0.8785 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4310 -0.0015 9 7 5.2384 -0.8926 -0.0027 10 6 5.5066 -2.3328 -0.0043 11 6 7.0180 -2.5703 -0.0060 12 1 7.5479 -1.9192 -0.7012 13 6 7.6376 -2.6064 1.4010 14 6 8.5139 -3.7664 0.8998 15 1 8.6458 -4.5636 1.6313 16 7 9.7772 -3.3306 0.2995 17 6 10.9376 -3.5226 0.9576 18 8 10.9359 -4.0567 2.0489 19 8 12.0986 -3.1224 0.4057 20 6 13.3092 -3.3608 1.1713 21 6 13.4680 -4.8621 1.4199 22 6 14.5178 -2.8433 0.3887 23 6 13.2173 -2.6287 2.5117 24 6 7.4086 -4.0524 -0.1305 25 16 2.5413 -1.4260 -0.0011 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5144 -0.8897 29 1 1.6082 2.8219 -1.0263 30 1 0.5252 2.2118 1.5974 31 1 2.4043 5.0022 0.8859 32 1 3.1481 3.1450 2.2708 33 1 5.9755 -0.2621 -0.0032 34 1 5.0684 -2.7850 0.8856 35 1 5.0674 -2.7832 -0.8944 36 1 8.2029 -1.7091 1.6523 37 1 6.9334 -2.8966 2.1809 38 1 9.7785 -2.9038 -0.5716 39 1 13.5334 -5.3837 0.4651 40 1 14.3765 -5.0409 1.9951 41 1 12.6070 -5.2312 1.9773 42 1 14.4048 -1.7738 0.2112 43 1 15.4265 -3.0219 0.9637 44 1 14.5831 -3.3652 -0.5660 45 1 12.3563 -2.9978 3.0689 46 1 14.1262 -2.8073 3.0862 47 1 13.1042 -1.5592 2.3345 48 1 6.6419 -4.7379 0.2306 49 1 7.7893 -4.3224 -1.1156 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12628558_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:54:07 Heat of formation + Delta-G solvation = -36.202179 kcal Electronic energy + Delta-G solvation = -29106.973232 eV Core-core repulsion = 24970.678714 eV Total energy + Delta-G solvation = -4136.294518 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.160 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96306 -41.07813 -40.52299 -38.27609 -37.86674 -36.54567 -35.31749 -34.00281 -32.72436 -29.88787 -28.38909 -28.32618 -28.22905 -26.71602 -25.61939 -24.64595 -23.99769 -23.19461 -21.20128 -20.93015 -20.03531 -19.37259 -19.06841 -18.01458 -17.62820 -17.34628 -17.18828 -16.77212 -16.70428 -16.15451 -15.94468 -15.73435 -15.65512 -15.43152 -15.10988 -14.92638 -14.51944 -14.27290 -14.12043 -13.88154 -13.73868 -13.52172 -13.46112 -13.36757 -13.25438 -13.03355 -12.93571 -12.88593 -12.76251 -12.51466 -12.45116 -12.35105 -12.06118 -11.90735 -11.63572 -11.42162 -11.40206 -11.13858 -10.94310 -10.64583 -10.55484 -10.19207 -10.01008 -8.60290 -4.79882 -0.00740 0.17340 0.74413 1.12145 1.29209 1.65947 1.71165 1.82901 1.96534 2.00765 3.09981 3.28067 3.41379 3.45919 3.59763 3.72042 3.72354 3.76701 3.81743 3.92466 4.15538 4.24411 4.32856 4.41472 4.49429 4.53351 4.57303 4.59260 4.62607 4.74594 4.76069 4.79031 4.80861 4.82039 4.85853 4.88436 4.89366 4.98531 5.04743 5.07623 5.08916 5.16785 5.25003 5.29054 5.30315 5.47501 5.60481 5.66390 6.30763 6.36922 6.43634 6.94379 7.32154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.260 4.260 3 C 0.056 3.944 4 C -0.040 4.040 5 O -0.533 6.533 6 Si 0.781 3.219 7 N -0.562 5.562 8 C 0.310 3.690 9 N -0.685 5.685 10 C 0.129 3.871 11 C -0.108 4.108 12 H 0.111 0.889 13 C -0.146 4.146 14 C 0.127 3.873 15 H 0.091 0.909 16 N -0.682 5.682 17 C 0.645 3.355 18 O -0.594 6.594 19 O -0.369 6.369 20 C 0.128 3.872 21 C -0.180 4.180 22 C -0.138 4.138 23 C -0.180 4.180 24 C -0.120 4.120 25 S 0.120 5.880 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.384 0.616 31 H -0.292 1.292 32 H -0.306 1.306 33 H 0.416 0.584 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.417 0.583 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.117 0.883 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -3.168 -3.392 5.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.383 4.383 3 C -0.074 4.074 4 C -0.153 4.153 5 O -0.340 6.340 6 Si 0.687 3.313 7 N -0.290 5.290 8 C -0.062 4.062 9 N -0.326 5.326 10 C 0.006 3.994 11 C -0.126 4.126 12 H 0.129 0.871 13 C -0.185 4.185 14 C 0.023 3.977 15 H 0.109 0.891 16 N -0.342 5.342 17 C 0.398 3.602 18 O -0.484 6.484 19 O -0.284 6.284 20 C 0.092 3.908 21 C -0.237 4.237 22 C -0.195 4.195 23 C -0.237 4.237 24 C -0.158 4.158 25 S 0.369 5.631 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.149 0.851 30 H 0.234 0.766 31 H -0.220 1.220 32 H -0.234 1.234 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.254 0.746 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.135 0.865 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.741 -3.596 -2.766 5.300 hybrid contribution -0.684 0.757 0.620 1.194 sum 2.057 -2.838 -2.146 4.110 Atomic orbital electron populations 1.20140 0.85749 1.02111 1.03617 1.25340 1.02055 0.93244 1.17682 1.20191 0.87095 0.97531 1.02591 1.24470 0.91682 0.95105 1.04025 1.86596 1.28650 1.89071 1.29646 0.92894 0.85341 0.73848 0.79231 1.65729 1.17207 1.17297 1.28754 1.23540 0.92887 0.91433 0.98300 1.44087 1.00957 1.08133 1.79421 1.21720 0.96673 0.78200 1.02819 1.22745 0.93305 0.98583 0.98010 0.87119 1.23573 0.98789 0.98757 0.97363 1.21879 0.80907 0.97768 0.97180 0.89051 1.44363 1.02768 1.63884 1.23170 1.18349 0.81844 0.77330 0.82650 1.90909 1.87133 1.48526 1.21865 1.86311 1.14866 1.76951 1.50275 1.22341 0.80875 0.96223 0.91371 1.22475 1.04073 0.94300 1.02883 1.21896 0.94501 1.02248 1.00872 1.22473 1.04291 1.00408 0.96567 1.23316 0.96775 0.95692 1.00033 1.83810 0.95818 1.09673 1.73789 0.91603 0.89768 0.90996 0.85099 0.76612 1.22003 1.23374 0.74490 0.90719 0.90258 0.91733 0.88202 0.74568 0.91858 0.89539 0.91764 0.91188 0.88374 0.91104 0.91796 0.89532 0.91977 0.86481 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.02 8.91 71.24 0.63 0.61 16 2 C -0.26 -0.88 6.50 24.58 0.16 -0.72 16 3 C 0.06 0.27 5.92 41.41 0.25 0.52 16 4 C -0.04 -0.12 2.94 71.24 0.21 0.09 16 5 O -0.53 -1.43 10.17 -148.98 -1.52 -2.94 16 6 Si 0.78 2.90 32.08 68.60 2.20 5.11 16 7 N -0.56 -2.94 8.95 -189.86 -1.70 -4.64 16 8 C 0.31 0.60 8.24 179.32 1.48 2.08 16 9 N -0.69 2.56 5.71 -351.02 -2.01 0.55 16 10 C 0.13 -1.09 5.37 86.38 0.46 -0.62 16 11 C -0.11 1.11 3.63 -10.27 -0.04 1.08 16 12 H 0.11 -1.28 8.14 -2.39 -0.02 -1.30 16 13 C -0.15 0.93 7.43 31.12 0.23 1.16 16 14 C 0.13 -0.58 4.32 45.52 0.20 -0.38 16 15 H 0.09 -0.02 7.46 -2.39 -0.02 -0.04 16 16 N -0.68 1.56 5.27 -567.62 -2.99 -1.43 16 17 C 0.64 3.25 8.06 129.79 1.05 4.30 16 18 O -0.59 -6.38 11.48 19.82 0.23 -6.16 16 19 O -0.37 -1.56 9.94 -55.46 -0.55 -2.11 16 20 C 0.13 0.27 1.13 -10.79 -0.01 0.26 16 21 C -0.18 -0.44 8.37 71.98 0.60 0.16 16 22 C -0.14 0.38 8.85 71.98 0.64 1.02 16 23 C -0.18 -0.49 8.37 71.98 0.60 0.12 16 24 C -0.12 1.27 7.39 31.12 0.23 1.50 16 25 S 0.12 0.07 22.32 -56.49 -1.26 -1.19 16 26 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.08 -0.08 6.40 -2.39 -0.02 -0.09 16 28 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.13 0.15 7.96 -2.39 -0.02 0.13 16 30 H 0.38 -0.74 8.13 -74.06 -0.60 -1.34 16 31 H -0.29 -2.54 7.11 99.48 0.71 -1.83 16 32 H -0.31 -3.09 7.11 99.48 0.71 -2.39 16 33 H 0.42 -2.07 8.60 -92.71 -0.80 -2.86 16 34 H 0.07 -0.63 7.85 -2.38 -0.02 -0.65 16 35 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.10 -0.65 7.90 -2.38 -0.02 -0.67 16 38 H 0.42 -2.88 8.81 -92.71 -0.82 -3.70 16 39 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 41 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 42 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 43 H 0.10 -0.57 8.14 -2.38 -0.02 -0.59 16 44 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.06 0.51 5.88 -2.38 -0.01 0.50 16 46 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 48 H 0.12 -1.46 8.10 -2.39 -0.02 -1.48 16 49 H 0.09 -1.07 8.14 -2.39 -0.02 -1.09 16 Total: 0.00 -17.91 404.38 -2.10 -20.01 By element: Atomic # 1 Polarization: -17.17 SS G_CDS: -1.19 Total: -18.36 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.69 Total: 11.16 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -6.69 Total: -5.52 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.84 Total: -11.21 kcal Atomic # 14 Polarization: 2.90 SS G_CDS: 2.20 Total: 5.11 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.26 Total: -1.19 kcal Total: -17.91 -2.10 -20.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12628558_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.192 kcal (2) G-P(sol) polarization free energy of solvation -17.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds