Wall clock time and date at job start Mon Mar 8 2021 03:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86299 * 109.47224 * 2 1 4 4 C 1.50703 * 109.46667 * 119.99946 * 2 1 3 5 5 C 1.38019 * 120.33199 * 244.99413 * 4 2 1 6 6 N 1.31973 * 120.85191 * 179.72365 * 5 4 2 7 7 C 1.32394 * 121.62797 * 0.26010 * 6 5 4 8 8 N 1.39004 * 119.71023 * 180.02562 * 7 6 5 9 9 C 1.46497 * 120.00202 * 179.97438 * 8 7 6 10 10 H 1.08998 * 112.84628 * 23.80310 * 9 8 7 11 11 C 1.53779 * 113.61561 * 154.99696 * 9 8 7 12 12 C 1.53781 * 87.07813 * 89.11705 * 11 9 8 13 13 H 1.09003 * 113.61408 * 270.88476 * 12 11 9 14 14 C 1.50699 * 113.61310 * 140.06758 * 12 11 9 15 15 O 1.20823 * 120.00141 * 359.97438 * 14 12 11 16 16 O 1.34234 * 120.00166 * 179.97438 * 14 12 11 17 17 C 1.45196 * 117.00163 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47144 * 180.02562 * 17 16 14 19 19 C 1.38237 * 119.99620 * 269.72445 * 18 17 16 20 20 C 1.38233 * 119.99852 * 179.76727 * 19 18 17 21 21 C 1.38240 * 119.99943 * 0.48290 * 20 19 18 22 22 C 1.38231 * 120.00129 * 359.79529 * 21 20 19 23 23 C 1.38232 * 120.00469 * 89.99865 * 18 17 16 24 24 C 1.53780 * 87.08462 * 25.43408 * 12 11 9 25 25 C 1.39139 * 120.58436 * 359.97438 * 7 6 5 26 26 C 1.38303 * 119.09870 * 0.02562 * 25 7 6 27 27 H 0.96693 * 114.00056 * 300.00503 * 1 2 3 28 28 H 1.08996 * 109.46947 * 239.99867 * 2 1 3 29 29 H 1.48498 * 110.00204 * 299.99870 * 3 2 1 30 30 H 1.48498 * 110.00169 * 61.31948 * 3 2 1 31 31 H 1.08002 * 119.57644 * 0.02562 * 5 4 2 32 32 H 0.97001 * 119.99585 * 359.97438 * 8 7 6 33 33 H 1.08995 * 113.61372 * 203.66547 * 11 9 8 34 34 H 1.09003 * 113.61271 * 334.48664 * 11 9 8 35 35 H 1.09010 * 109.47049 * 299.99981 * 17 16 14 36 36 H 1.08998 * 109.47308 * 59.99308 * 17 16 14 37 37 H 1.08002 * 120.00030 * 359.97438 * 19 18 17 38 38 H 1.07997 * 120.00274 * 180.25036 * 20 19 18 39 39 H 1.07998 * 119.99944 * 179.76760 * 21 20 19 40 40 H 1.07999 * 120.00296 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.99923 * 0.02562 * 23 18 17 42 42 H 1.08998 * 113.61350 * 220.01720 * 24 12 11 43 43 H 1.09000 * 113.61460 * 89.11362 * 24 12 11 44 44 H 1.08004 * 120.44965 * 180.02562 * 25 7 6 45 45 H 1.07994 * 120.74650 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6383 -0.0201 2.1941 6 7 3.0782 -0.6308 3.2782 7 6 2.8658 -1.9215 3.4825 8 7 3.3467 -2.5243 4.6391 9 6 3.1148 -3.9519 4.8719 10 1 2.9440 -4.5087 3.9506 11 6 4.1544 -4.6015 5.8004 12 6 3.2388 -4.2073 6.9714 13 1 3.4453 -3.2149 7.3722 14 6 3.1411 -5.2624 8.0429 15 8 3.7519 -6.2986 7.9280 16 8 2.3756 -5.0512 9.1252 17 6 2.3293 -6.1107 10.1169 18 6 1.4265 -5.6982 11.2508 19 6 1.9481 -5.0249 12.3397 20 6 1.1191 -4.6423 13.3776 21 6 -0.2297 -4.9418 13.3313 22 6 -0.7502 -5.6201 12.2452 23 6 0.0778 -5.9980 11.2048 24 6 2.0741 -4.2363 5.9677 25 6 2.1645 -2.6798 2.5503 26 6 1.6911 -2.0673 1.4042 27 1 -0.3933 0.4417 0.7649 28 1 1.7923 -0.5138 -0.8899 29 1 1.5616 2.4679 -1.2085 30 1 1.5880 2.4586 1.2242 31 1 2.8300 1.0345 2.0616 32 1 3.8359 -1.9995 5.2920 33 1 4.2492 -5.6787 5.6638 34 1 5.1164 -4.0890 5.8050 35 1 1.9432 -7.0211 9.6582 36 1 3.3332 -6.2943 10.4996 37 1 3.0026 -4.7949 12.3779 38 1 1.5259 -4.1128 14.2265 39 1 -0.8766 -4.6461 14.1440 40 1 -1.8039 -5.8544 12.2092 41 1 -0.3288 -6.5283 10.3563 42 1 1.3562 -3.4282 6.1085 43 1 1.6002 -5.2137 5.8768 44 1 1.9920 -3.7325 2.7194 45 1 1.1439 -2.6305 0.6629 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12636048_13915762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:59:14 Heat of formation + Delta-G solvation = -6.391508 kcal Electronic energy + Delta-G solvation = -27641.080660 eV Core-core repulsion = 23591.598408 eV Total energy + Delta-G solvation = -4049.482252 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.09257 -41.37623 -40.33158 -39.66630 -37.99782 -37.51486 -35.20216 -33.40070 -33.21297 -31.90269 -31.22076 -28.60291 -27.06543 -26.84180 -25.99366 -24.80442 -23.59835 -23.10473 -22.45036 -22.12554 -20.34251 -19.38517 -18.59107 -18.50215 -18.14199 -17.61509 -17.46227 -17.28230 -16.47284 -16.38006 -16.20117 -16.13319 -15.90069 -15.55545 -15.29881 -14.88067 -14.69260 -14.41626 -14.31241 -14.16617 -14.00335 -13.93866 -13.73229 -13.48197 -13.37512 -13.30058 -12.87624 -12.46023 -12.20153 -12.13769 -12.04860 -11.92472 -11.78156 -11.72319 -11.40960 -11.07691 -10.76341 -10.52792 -10.37889 -9.92831 -9.89405 -8.72408 -4.89710 0.13004 0.23523 0.39753 0.41881 1.04052 1.35167 1.61241 1.69229 1.97444 2.01879 2.81464 2.82008 3.22840 3.32671 3.47292 3.51755 3.60304 3.66989 3.72714 3.75592 3.80231 3.94767 4.03673 4.08210 4.09278 4.15383 4.20383 4.29965 4.35083 4.45011 4.52684 4.60947 4.63581 4.64934 4.68589 4.78509 4.83980 4.91199 4.94226 5.01691 5.04896 5.06475 5.29404 5.34848 5.45775 5.50119 5.52896 5.55178 5.97963 6.02773 6.51340 6.53385 6.61591 7.14799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.063 4.063 3 Si 0.755 3.245 4 C -0.232 4.232 5 C 0.144 3.856 6 N -0.563 5.563 7 C 0.398 3.602 8 N -0.701 5.701 9 C 0.138 3.862 10 H 0.120 0.880 11 C -0.119 4.119 12 C -0.110 4.110 13 H 0.137 0.863 14 C 0.472 3.528 15 O -0.534 6.534 16 O -0.355 6.355 17 C 0.108 3.892 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.131 4.131 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.107 4.107 24 C -0.131 4.131 25 C -0.240 4.240 26 C -0.012 4.012 27 H 0.384 0.616 28 H 0.126 0.874 29 H -0.301 1.301 30 H -0.283 1.283 31 H 0.165 0.835 32 H 0.409 0.591 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.153 0.847 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -0.523 1.129 1.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.173 4.173 3 Si 0.662 3.338 4 C -0.237 4.237 5 C -0.013 4.013 6 N -0.281 5.281 7 C 0.162 3.838 8 N -0.333 5.333 9 C 0.032 3.968 10 H 0.138 0.862 11 C -0.157 4.157 12 C -0.129 4.129 13 H 0.155 0.845 14 C 0.316 3.684 15 O -0.423 6.423 16 O -0.272 6.272 17 C 0.035 3.965 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.149 4.149 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.125 4.125 24 C -0.170 4.170 25 C -0.264 4.264 26 C -0.038 4.038 27 H 0.233 0.767 28 H 0.144 0.856 29 H -0.230 1.230 30 H -0.210 1.210 31 H 0.182 0.818 32 H 0.245 0.755 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.171 0.829 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.559 -0.068 1.230 1.353 hybrid contribution -1.285 -0.524 0.513 1.479 sum -0.725 -0.592 1.743 1.978 Atomic orbital electron populations 1.86567 1.18747 1.80276 1.50131 1.24891 0.83112 1.11052 0.98222 0.94205 0.90514 0.72704 0.76425 1.20961 1.06657 0.96166 0.99918 1.22473 0.91593 0.99640 0.87588 1.67135 1.26780 1.09813 1.24344 1.18576 0.89549 0.88397 0.87235 1.44189 1.60347 1.08648 1.20140 1.21797 0.95605 0.80636 0.98787 0.86213 1.23326 0.98103 1.03093 0.91176 1.22780 1.01645 0.97817 0.90655 0.84523 1.24115 0.74662 0.87930 0.81679 1.90672 1.44279 1.29252 1.78110 1.86606 1.63647 1.46569 1.30406 1.21872 0.99878 0.88732 0.86015 1.19590 0.94521 1.02122 0.95170 1.21315 1.00847 0.96816 0.93624 1.21482 0.94076 1.00165 0.99169 1.21610 0.95830 0.97254 0.98697 1.21484 1.00949 0.98557 0.93893 1.21312 0.92645 0.99285 0.99258 1.23482 0.96027 1.04158 0.93343 1.21727 1.06067 1.02282 0.96313 1.21428 0.93050 0.93524 0.95765 0.76650 0.85617 1.22961 1.21013 0.81831 0.75450 0.87412 0.88889 0.90011 0.90159 0.84964 0.83976 0.83908 0.83944 0.84871 0.89577 0.87874 0.82922 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.02 12.84 -148.98 -1.91 -2.94 16 2 C -0.06 0.08 2.82 71.24 0.20 0.28 16 3 Si 0.76 -1.42 29.91 68.60 2.05 0.63 16 4 C -0.23 0.00 5.36 -19.76 -0.11 -0.10 16 5 C 0.14 0.23 9.84 84.62 0.83 1.06 16 6 N -0.56 -2.42 10.39 -193.26 -2.01 -4.43 16 7 C 0.40 0.53 7.65 133.07 1.02 1.55 16 8 N -0.70 2.11 5.43 -322.05 -1.75 0.36 16 9 C 0.14 -0.85 4.11 45.52 0.19 -0.66 16 10 H 0.12 -0.98 6.10 -2.39 -0.01 -0.99 16 11 C -0.12 0.60 7.15 31.12 0.22 0.82 16 12 C -0.11 0.39 4.13 -11.01 -0.05 0.34 16 13 H 0.14 -0.80 8.14 -2.39 -0.02 -0.82 16 14 C 0.47 1.44 7.49 71.24 0.53 1.97 16 15 O -0.53 -4.53 15.65 21.97 0.34 -4.18 16 16 O -0.36 -1.42 10.20 -51.46 -0.53 -1.95 16 17 C 0.11 0.30 5.59 71.24 0.40 0.70 16 18 C -0.11 -0.32 5.52 -19.87 -0.11 -0.43 16 19 C -0.11 -0.19 9.70 22.27 0.22 0.02 16 20 C -0.13 -0.04 10.05 22.27 0.22 0.19 16 21 C -0.12 0.03 10.05 22.27 0.22 0.25 16 22 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 23 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 24 C -0.13 0.71 7.43 31.12 0.23 0.94 16 25 C -0.24 0.24 9.29 22.50 0.21 0.45 16 26 C -0.01 0.01 9.84 22.44 0.22 0.23 16 27 H 0.38 -1.22 8.70 -74.06 -0.64 -1.87 16 28 H 0.13 -0.41 7.96 -2.39 -0.02 -0.43 16 29 H -0.30 -1.74 7.11 99.48 0.71 -1.04 16 30 H -0.28 -0.60 7.01 99.48 0.70 0.09 16 31 H 0.17 -0.28 4.85 -2.91 -0.01 -0.30 16 32 H 0.41 -1.52 8.82 -92.71 -0.82 -2.34 16 33 H 0.11 -0.34 7.44 -2.39 -0.02 -0.36 16 34 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.08 0.16 8.08 -2.38 -0.02 0.14 16 36 H 0.08 0.19 8.08 -2.39 -0.02 0.17 16 37 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 38 H 0.14 -0.53 8.06 -2.91 -0.02 -0.55 16 39 H 0.14 -0.64 8.06 -2.91 -0.02 -0.66 16 40 H 0.14 -0.55 8.06 -2.91 -0.02 -0.58 16 41 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 42 H 0.09 -0.38 8.14 -2.39 -0.02 -0.39 16 43 H 0.10 -0.61 8.10 -2.39 -0.02 -0.63 16 44 H 0.15 -0.83 6.04 -2.91 -0.02 -0.84 16 45 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 Total: 0.00 -18.09 381.23 0.70 -17.40 By element: Atomic # 1 Polarization: -12.35 SS G_CDS: -0.40 Total: -12.75 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 4.90 Total: 7.86 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -3.76 Total: -4.07 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -2.09 Total: -9.07 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 2.05 Total: 0.63 kcal Total: -18.09 0.70 -17.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12636048_13915762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.004 kcal (2) G-P(sol) polarization free energy of solvation -18.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds