Wall clock time and date at job start Mon Mar 8 2021 03:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86298 * 109.47269 * 2 1 4 4 C 1.50705 * 109.46738 * 120.00196 * 2 1 3 5 5 C 1.33321 * 125.95202 * 65.02598 * 4 2 1 6 6 N 1.32122 * 114.57616 * 179.75385 * 5 4 2 7 7 C 1.29685 * 116.86583 * 0.46673 * 6 5 4 8 8 N 1.38615 * 124.94804 * 179.81578 * 7 6 5 9 9 C 1.46502 * 119.99590 * 359.42541 * 8 7 6 10 10 H 1.08993 * 112.85324 * 334.66180 * 9 8 7 11 11 C 1.53784 * 113.61319 * 105.86388 * 9 8 7 12 12 C 1.54054 * 86.98622 * 89.15647 * 11 9 8 13 13 H 1.09000 * 113.61319 * 270.88302 * 12 11 9 14 14 C 1.50703 * 113.61933 * 139.97452 * 12 11 9 15 15 O 1.20827 * 120.00165 * 262.50289 * 14 12 11 16 16 O 1.34230 * 119.99667 * 82.50642 * 14 12 11 17 17 C 1.45200 * 116.99867 * 179.97438 * 16 14 12 18 18 C 1.50704 * 109.47208 * 179.97438 * 17 16 14 19 19 C 1.38237 * 119.99474 * 269.73108 * 18 17 16 20 20 C 1.38247 * 119.98997 * 179.76598 * 19 18 17 21 21 C 1.38228 * 120.00191 * 0.50320 * 20 19 18 22 22 C 1.38241 * 120.00035 * 359.75253 * 21 20 19 23 23 C 1.38228 * 119.99852 * 90.00027 * 18 17 16 24 24 C 1.53787 * 87.07954 * 25.42892 * 12 11 9 25 25 S 1.70964 * 110.10148 * 359.55055 * 7 6 5 26 26 H 0.96693 * 113.99643 * 300.00529 * 1 2 3 27 27 H 1.09003 * 109.46657 * 239.99739 * 2 1 3 28 28 H 1.48494 * 110.00071 * 299.99683 * 3 2 1 29 29 H 1.48497 * 110.00131 * 61.32033 * 3 2 1 30 30 H 1.07992 * 122.71201 * 359.97438 * 5 4 2 31 31 H 0.96991 * 119.99725 * 179.69805 * 8 7 6 32 32 H 1.09001 * 113.61282 * 203.65816 * 11 9 8 33 33 H 1.08995 * 113.61367 * 334.56204 * 11 9 8 34 34 H 1.09000 * 109.47537 * 300.00563 * 17 16 14 35 35 H 1.09001 * 109.47006 * 60.00161 * 17 16 14 36 36 H 1.07997 * 120.00904 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99347 * 180.22723 * 20 19 18 38 38 H 1.07997 * 119.99945 * 179.72047 * 21 20 19 39 39 H 1.08000 * 119.99703 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00077 * 0.02562 * 23 18 17 41 41 H 1.08992 * 113.61521 * 220.02567 * 24 12 11 42 42 H 1.09000 * 113.68711 * 89.12920 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7625 -2.0027 1.5119 6 7 2.3024 -2.3915 2.6534 7 6 2.9109 -1.4847 3.3528 8 7 3.5307 -1.7060 4.5728 9 6 3.5174 -3.0442 5.1690 10 1 2.6734 -3.6478 4.8355 11 6 4.8691 -3.7721 5.0792 12 6 5.2197 -3.1162 6.4283 13 1 5.6950 -2.1404 6.3289 14 6 5.9540 -4.0330 7.3726 15 8 5.3480 -4.6224 8.2359 16 8 7.2813 -4.1946 7.2546 17 6 7.9225 -5.0923 8.1987 18 6 9.4014 -5.1479 7.9140 19 6 9.9015 -6.0931 7.0380 20 6 11.2576 -6.1408 6.7733 21 6 12.1145 -5.2502 7.3924 22 6 11.6148 -4.3085 8.2725 23 6 10.2583 -4.2573 8.5332 24 6 3.7071 -3.0404 6.6951 25 16 2.8438 0.0218 2.5475 26 1 -0.3932 0.4418 0.7650 27 1 1.7923 -0.5139 -0.8900 28 1 1.5617 2.4678 -1.2085 29 1 1.5880 2.4585 1.2242 30 1 1.2308 -2.6778 0.8579 31 1 3.9698 -0.9741 5.0335 32 1 4.7846 -4.8576 5.1303 33 1 5.4932 -3.4335 4.2522 34 1 7.7608 -4.7285 9.2133 35 1 7.4959 -6.0903 8.0983 36 1 9.2327 -6.7920 6.5579 37 1 11.6479 -6.8769 6.0861 38 1 13.1743 -5.2905 7.1890 39 1 12.2844 -3.6130 8.7565 40 1 9.8681 -3.5220 9.2212 41 1 3.3939 -2.1116 7.1717 42 1 3.3043 -3.9256 7.1874 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12636048_15704118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:59:18 Heat of formation + Delta-G solvation = -0.282779 kcal Electronic energy + Delta-G solvation = -26127.303336 eV Core-core repulsion = 22167.238224 eV Total energy + Delta-G solvation = -3960.065111 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.03654 -40.86759 -40.24723 -39.59480 -37.98661 -37.51358 -35.08663 -33.20710 -31.88262 -31.26284 -28.68805 -27.09194 -26.87040 -26.33862 -24.59357 -23.57824 -22.93475 -22.24725 -21.36876 -20.28145 -19.61541 -18.89936 -18.31071 -18.06770 -17.60046 -17.39843 -16.91638 -16.59837 -16.34573 -16.08960 -16.02797 -15.85773 -15.56896 -15.14472 -14.95477 -14.67378 -14.38775 -14.16295 -13.95762 -13.92752 -13.74296 -13.46009 -13.39112 -13.03084 -12.78350 -12.46799 -12.20024 -12.11981 -12.03844 -11.95519 -11.80312 -11.72567 -11.41311 -11.11463 -10.91378 -10.28398 -10.20503 -9.90796 -9.87522 -8.76567 -5.01206 -0.06236 0.01576 0.14897 0.41756 0.67263 1.05028 1.27065 1.55497 1.70070 1.90046 1.97338 2.12180 2.83671 3.21570 3.30621 3.40550 3.51940 3.62252 3.67154 3.74330 3.80075 3.93085 4.02111 4.09296 4.17165 4.22350 4.31430 4.49032 4.54689 4.58877 4.62936 4.65486 4.66646 4.73464 4.80750 4.89501 4.95312 4.96304 5.06935 5.20403 5.30736 5.47761 5.52142 5.54943 5.82004 5.99944 6.14803 6.45401 6.62715 7.01118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.023 4.023 3 Si 0.723 3.277 4 C -0.305 4.305 5 C 0.104 3.896 6 N -0.575 5.575 7 C 0.317 3.683 8 N -0.667 5.667 9 C 0.144 3.856 10 H 0.100 0.900 11 C -0.127 4.127 12 C -0.105 4.105 13 H 0.148 0.852 14 C 0.471 3.529 15 O -0.535 6.535 16 O -0.353 6.353 17 C 0.108 3.892 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.131 4.131 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.107 4.107 24 C -0.118 4.118 25 S 0.121 5.879 26 H 0.386 0.614 27 H 0.135 0.865 28 H -0.277 1.277 29 H -0.264 1.264 30 H 0.178 0.822 31 H 0.427 0.573 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.090 2.758 0.210 5.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.136 4.136 3 Si 0.625 3.375 4 C -0.428 4.428 5 C -0.046 4.046 6 N -0.301 5.301 7 C -0.054 4.054 8 N -0.307 5.307 9 C 0.036 3.964 10 H 0.118 0.882 11 C -0.166 4.166 12 C -0.124 4.124 13 H 0.166 0.834 14 C 0.316 3.684 15 O -0.425 6.425 16 O -0.270 6.270 17 C 0.035 3.965 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.149 4.149 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.125 4.125 24 C -0.156 4.156 25 S 0.370 5.630 26 H 0.235 0.765 27 H 0.153 0.847 28 H -0.203 1.203 29 H -0.190 1.190 30 H 0.195 0.805 31 H 0.267 0.733 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.169 3.395 0.433 6.199 hybrid contribution -1.361 -0.866 0.423 1.668 sum 3.808 2.529 0.857 4.651 Atomic orbital electron populations 1.86594 1.18286 1.80270 1.50003 1.24282 0.82958 1.10413 0.95919 0.94384 0.90695 0.73191 0.79206 1.25637 1.14782 0.98125 1.04248 1.21457 0.97118 0.93768 0.92301 1.66478 1.19640 1.34723 1.09284 1.23879 0.95403 0.93654 0.92427 1.43681 1.58640 1.11534 1.16869 1.21678 0.98315 0.83387 0.93015 0.88234 1.23438 0.97488 1.00876 0.94847 1.22856 0.95472 0.99585 0.94507 0.83390 1.24122 0.80513 0.80487 0.83311 1.90678 1.68703 1.47416 1.35701 1.86601 1.22896 1.61648 1.55876 1.21870 0.89009 0.93579 0.92060 1.19581 0.93144 0.98410 1.00245 1.21310 0.96409 0.98220 0.96642 1.21479 0.93205 0.99856 1.00349 1.21608 1.01131 0.94731 0.95881 1.21485 0.95357 0.99377 0.98609 1.21307 0.93925 0.97838 0.99409 1.23322 0.91729 1.05419 0.95174 1.83903 1.54690 1.09774 1.14605 0.76483 0.84722 1.20257 1.18982 0.80474 0.73288 0.88852 0.89250 0.90067 0.90259 0.85041 0.84012 0.83893 0.83900 0.84855 0.88130 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.08 12.88 -148.98 -1.92 -2.99 16 2 C -0.02 0.02 2.99 71.24 0.21 0.24 16 3 Si 0.72 -1.45 31.07 68.60 2.13 0.68 16 4 C -0.31 -0.11 5.73 24.58 0.14 0.03 16 5 C 0.10 0.33 11.24 83.54 0.94 1.27 16 6 N -0.58 -2.81 9.86 -202.03 -1.99 -4.80 16 7 C 0.32 0.20 8.09 179.32 1.45 1.65 16 8 N -0.67 2.82 5.42 -327.88 -1.78 1.05 16 9 C 0.14 -0.47 4.41 45.52 0.20 -0.27 16 10 H 0.10 0.05 7.70 -2.39 -0.02 0.03 16 11 C -0.13 0.44 7.45 31.21 0.23 0.67 16 12 C -0.11 0.42 4.15 -10.92 -0.05 0.37 16 13 H 0.15 -1.29 8.14 -2.39 -0.02 -1.31 16 14 C 0.47 1.42 7.49 71.24 0.53 1.96 16 15 O -0.54 -4.81 15.65 21.96 0.34 -4.46 16 16 O -0.35 -1.28 10.20 -51.42 -0.52 -1.80 16 17 C 0.11 0.29 5.59 71.24 0.40 0.69 16 18 C -0.11 -0.29 5.52 -19.87 -0.11 -0.40 16 19 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 20 C -0.13 0.00 10.05 22.27 0.22 0.23 16 21 C -0.12 0.08 10.05 22.27 0.22 0.30 16 22 C -0.13 0.04 10.05 22.27 0.22 0.27 16 23 C -0.11 -0.12 9.70 22.27 0.22 0.09 16 24 C -0.12 0.51 7.14 31.13 0.22 0.73 16 25 S 0.12 -0.23 20.59 -56.49 -1.16 -1.39 16 26 H 0.39 -1.23 8.70 -74.06 -0.64 -1.88 16 27 H 0.14 -0.42 7.96 -2.39 -0.02 -0.44 16 28 H -0.28 -1.24 7.11 99.48 0.71 -0.53 16 29 H -0.26 -0.39 7.11 99.48 0.71 0.32 16 30 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 31 H 0.43 -4.00 8.83 -92.71 -0.82 -4.82 16 32 H 0.09 -0.20 8.10 -2.39 -0.02 -0.21 16 33 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.08 0.17 8.08 -2.39 -0.02 0.15 16 35 H 0.08 0.19 8.08 -2.39 -0.02 0.17 16 36 H 0.13 -0.12 8.06 -2.91 -0.02 -0.15 16 37 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 38 H 0.14 -0.70 8.06 -2.91 -0.02 -0.72 16 39 H 0.14 -0.63 8.06 -2.91 -0.02 -0.66 16 40 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 41 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 42 H 0.10 -0.11 7.44 -2.39 -0.02 -0.13 16 Total: 0.00 -17.69 376.87 0.02 -17.68 By element: Atomic # 1 Polarization: -11.46 SS G_CDS: -0.36 Total: -11.82 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.28 Total: 7.87 kcal Atomic # 7 Polarization: 0.02 SS G_CDS: -3.77 Total: -3.75 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -2.10 Total: -9.26 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: 2.13 Total: 0.68 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -1.16 Total: -1.39 kcal Total: -17.69 0.02 -17.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12636048_15704118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.394 kcal (2) G-P(sol) polarization free energy of solvation -17.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds