Wall clock time and date at job start Mon Mar 8 2021 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33332 * 125.95253 * 2 1 4 4 C 1.50700 * 122.70721 * 0.02562 * 3 2 1 5 5 O 1.42891 * 109.47427 * 44.19484 * 4 3 2 6 6 Si 1.86311 * 109.46957 * 164.19532 * 4 3 2 7 7 N 1.32119 * 114.58169 * 179.97438 * 3 2 1 8 8 C 1.29695 * 116.86191 * 0.02562 * 7 3 2 9 9 N 1.38615 * 124.94351 * 179.97438 * 8 7 3 10 10 C 1.46497 * 119.99487 * 179.97438 * 9 8 7 11 11 H 1.09000 * 112.90966 * 336.24998 * 10 9 8 12 12 C 1.53788 * 113.61179 * 107.50294 * 10 9 8 13 13 C 1.53785 * 87.07736 * 89.11571 * 12 10 9 14 14 H 1.08998 * 113.69012 * 270.86893 * 13 12 10 15 15 C 1.50703 * 113.61278 * 139.98369 * 13 12 10 16 16 O 1.20832 * 119.99657 * 262.50205 * 15 13 12 17 17 O 1.34228 * 120.00092 * 82.49549 * 15 13 12 18 18 C 1.45204 * 116.99680 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.46936 * 180.02562 * 18 17 15 20 20 C 1.38231 * 120.00234 * 89.99932 * 19 18 17 21 21 C 1.38234 * 119.99999 * 180.02562 * 20 19 18 22 22 C 1.38235 * 120.00189 * 359.97438 * 21 20 19 23 23 C 1.38237 * 120.00057 * 359.97438 * 22 21 20 24 24 C 1.38237 * 119.99707 * 0.02562 * 23 22 21 25 25 C 1.53775 * 87.08483 * 25.43395 * 13 12 10 26 26 S 1.70962 * 110.10222 * 0.24104 * 8 7 3 27 27 H 1.09006 * 109.47166 * 84.36954 * 1 2 3 28 28 H 1.08992 * 109.47640 * 204.36915 * 1 2 3 29 29 H 1.09001 * 109.47347 * 324.37735 * 1 2 3 30 30 H 1.09003 * 109.47260 * 284.19178 * 4 3 2 31 31 H 0.96706 * 114.00121 * 59.99681 * 5 4 3 32 32 H 1.48500 * 109.99976 * 179.97438 * 6 4 3 33 33 H 1.48500 * 109.99857 * 301.31853 * 6 4 3 34 34 H 0.96999 * 120.00489 * 0.02562 * 9 8 7 35 35 H 1.08994 * 113.61624 * 334.56889 * 12 10 9 36 36 H 1.09000 * 113.61398 * 203.66220 * 12 10 9 37 37 H 1.09000 * 109.47365 * 60.00486 * 18 17 15 38 38 H 1.09003 * 109.46955 * 300.00088 * 18 17 15 39 39 H 1.08000 * 120.00055 * 359.97414 * 20 19 18 40 40 H 1.08002 * 120.00185 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99982 * 179.70027 * 22 21 20 42 42 H 1.07992 * 120.00600 * 180.02562 * 23 22 21 43 43 H 1.07994 * 120.00117 * 180.02562 * 24 23 22 44 44 H 1.09004 * 113.61606 * 89.11140 * 25 13 12 45 45 H 1.09003 * 113.61285 * 220.02031 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.6687 2.5750 0.9401 6 14 3.0898 3.6763 0.4788 7 7 3.5850 0.8188 0.0005 8 6 3.9314 -0.4310 0.0005 9 7 5.2384 -0.8926 0.0005 10 6 5.5065 -2.3329 0.0010 11 1 4.6807 -2.9180 0.4057 12 6 6.0357 -2.8614 -1.3428 13 6 7.4474 -2.5444 -0.8218 14 1 7.7799 -1.5310 -1.0466 15 6 8.4721 -3.5896 -1.1807 16 8 8.7686 -4.4449 -0.3803 17 8 9.0552 -3.5705 -2.3895 18 6 10.0324 -4.6082 -2.6664 19 6 10.5766 -4.4268 -4.0600 20 6 11.6944 -3.6409 -4.2687 21 6 12.1932 -3.4741 -5.5471 22 6 11.5744 -4.0937 -6.6167 23 6 10.4572 -4.8806 -6.4080 24 6 9.9584 -5.0473 -5.1295 25 6 6.8748 -2.7046 0.5964 26 16 2.5412 -1.4260 -0.0071 27 1 -0.3634 0.1008 -1.0228 28 1 -0.3634 -0.9360 0.4240 29 1 -0.3634 0.8354 0.5986 30 1 1.3741 2.7300 -0.9956 31 1 0.9236 2.3678 1.8497 32 1 2.5619 5.0643 0.4825 33 1 3.6210 3.3308 1.8218 34 1 5.9756 -0.2621 0.0009 35 1 5.7394 -2.2541 -2.1980 36 1 5.8551 -3.9255 -1.4951 37 1 9.5571 -5.5858 -2.5860 38 1 10.8481 -4.5405 -1.9465 39 1 12.1776 -3.1564 -3.4331 40 1 13.0663 -2.8597 -5.7102 41 1 11.9613 -3.9595 -7.6161 42 1 9.9740 -5.3650 -7.2435 43 1 9.0859 -5.6624 -4.9663 44 1 6.9236 -3.7259 0.9742 45 1 7.2559 -1.9707 1.3066 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12636048_15704122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:59:24 Heat of formation + Delta-G solvation = -9.840197 kcal Electronic energy + Delta-G solvation = -28284.485856 eV Core-core repulsion = 24168.468684 eV Total energy + Delta-G solvation = -4116.017171 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.06022 -41.06758 -40.44335 -39.79373 -37.83058 -37.41272 -35.28058 -33.23942 -32.54972 -31.93300 -29.41293 -28.43150 -27.10505 -26.83944 -25.60788 -24.39491 -23.62501 -23.00892 -22.25804 -20.98176 -20.55436 -19.07801 -18.80570 -18.27750 -17.94283 -17.59107 -17.54587 -17.04995 -16.72221 -16.67543 -16.15171 -16.00711 -15.71101 -15.55286 -15.22878 -14.75809 -14.46856 -14.38291 -14.15494 -14.07641 -13.93892 -13.78427 -13.73665 -13.53082 -13.48820 -13.31336 -13.00364 -12.75129 -12.38913 -12.21316 -12.15471 -12.04193 -11.97355 -11.77451 -11.69081 -11.43367 -11.04814 -10.61944 -10.44533 -10.06087 -9.94088 -9.89967 -8.69201 -4.65007 -0.00992 0.12576 0.14554 0.38472 0.75622 1.09128 1.44254 1.66413 1.73554 1.85623 1.93243 2.12590 2.80276 2.99857 3.07948 3.32300 3.35980 3.47309 3.50405 3.66350 3.72420 3.88258 4.00746 4.08068 4.12195 4.13980 4.16780 4.32388 4.34989 4.36856 4.42813 4.47633 4.57355 4.58139 4.60243 4.65757 4.76401 4.79397 4.90097 4.91041 5.00298 5.11251 5.31162 5.32486 5.43883 5.49251 5.50608 5.53179 5.94060 6.18278 6.37073 6.67506 6.91008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.231 4.231 3 C 0.063 3.937 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.724 3.276 7 N -0.536 5.536 8 C 0.319 3.681 9 N -0.678 5.678 10 C 0.128 3.872 11 H 0.105 0.895 12 C -0.136 4.136 13 C -0.110 4.110 14 H 0.127 0.873 15 C 0.472 3.528 16 O -0.504 6.504 17 O -0.348 6.348 18 C 0.109 3.891 19 C -0.102 4.102 20 C -0.095 4.095 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.095 4.095 25 C -0.121 4.121 26 S 0.105 5.895 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.377 0.623 32 H -0.264 1.264 33 H -0.267 1.267 34 H 0.415 0.585 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 -1.825 -2.612 3.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.354 4.354 3 C -0.067 4.067 4 C -0.155 4.155 5 O -0.331 6.331 6 Si 0.625 3.375 7 N -0.262 5.262 8 C -0.052 4.052 9 N -0.318 5.318 10 C 0.021 3.979 11 H 0.123 0.877 12 C -0.175 4.175 13 C -0.130 4.130 14 H 0.145 0.855 15 C 0.314 3.686 16 O -0.391 6.391 17 O -0.265 6.265 18 C 0.036 3.964 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.140 4.140 24 C -0.113 4.113 25 C -0.160 4.160 26 S 0.354 5.646 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.224 0.776 32 H -0.190 1.190 33 H -0.192 1.192 34 H 0.253 0.747 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.781 -2.214 -2.344 3.683 hybrid contribution -0.253 0.307 0.767 0.864 sum 1.528 -1.907 -1.577 2.908 Atomic orbital electron populations 1.20348 0.86568 1.03581 1.03257 1.25193 1.01347 0.92807 1.16015 1.20028 0.86647 0.97233 1.02789 1.24512 0.98136 0.95660 0.97167 1.86554 1.34668 1.91267 1.20649 0.93577 0.81861 0.75489 0.86556 1.65689 1.17134 1.16476 1.26921 1.23199 0.91595 0.91508 0.98906 1.43536 1.01998 1.05933 1.80344 1.21892 0.98729 0.80212 0.97067 0.87688 1.23511 0.91995 1.03288 0.98735 1.22618 0.92664 0.98547 0.99124 0.85468 1.23496 0.80360 0.85188 0.79534 1.90697 1.61058 1.37250 1.50105 1.86597 1.52583 1.52216 1.35105 1.21855 0.90662 0.90063 0.93858 1.19476 0.96827 1.00249 0.93626 1.21102 0.95710 0.96914 0.97568 1.21212 1.00304 0.99984 0.92541 1.21311 0.95575 0.96361 0.99298 1.21211 0.96768 0.99092 0.96977 1.21100 0.99021 0.98878 0.92281 1.23368 0.92855 1.05067 0.94670 1.84011 0.96356 1.10504 1.73719 0.91104 0.91922 0.88367 0.85916 0.77558 1.19035 1.19207 0.74653 0.88955 0.87947 0.90096 0.90097 0.85763 0.85532 0.85627 0.85536 0.85770 0.86521 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.01 9.97 36.00 0.36 0.35 16 2 C -0.23 -0.33 6.49 -36.02 -0.23 -0.56 16 3 C 0.06 0.12 6.00 -84.18 -0.50 -0.38 16 4 C -0.04 -0.04 2.74 36.01 0.10 0.06 16 5 O -0.53 -0.55 10.21 -35.23 -0.36 -0.91 16 6 Si 0.72 0.84 31.88 -169.99 -5.42 -4.58 16 7 N -0.54 -1.14 8.61 -11.36 -0.10 -1.24 16 8 C 0.32 0.24 8.24 -87.67 -0.72 -0.48 16 9 N -0.68 1.16 5.42 -54.98 -0.30 0.86 16 10 C 0.13 -0.37 4.31 -67.11 -0.29 -0.66 16 11 H 0.11 -0.32 7.07 -51.93 -0.37 -0.68 16 12 C -0.14 0.41 7.43 -25.91 -0.19 0.21 16 13 C -0.11 0.26 4.14 -90.96 -0.38 -0.11 16 14 H 0.13 -0.47 8.14 -51.93 -0.42 -0.89 16 15 C 0.47 0.32 7.48 36.01 0.27 0.59 16 16 O -0.50 -1.67 15.65 -18.75 -0.29 -1.96 16 17 O -0.35 -0.38 10.20 -39.25 -0.40 -0.79 16 18 C 0.11 0.05 5.59 36.01 0.20 0.25 16 19 C -0.10 -0.07 5.52 -104.62 -0.58 -0.65 16 20 C -0.09 -0.03 9.70 -39.59 -0.38 -0.41 16 21 C -0.12 0.01 10.05 -39.58 -0.40 -0.39 16 22 C -0.11 0.02 10.05 -39.58 -0.40 -0.37 16 23 C -0.12 0.02 10.05 -39.58 -0.40 -0.38 16 24 C -0.09 -0.03 9.70 -39.58 -0.38 -0.41 16 25 C -0.12 0.35 7.15 -25.92 -0.19 0.16 16 26 S 0.10 0.03 21.69 -107.50 -2.33 -2.30 16 27 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 29 H 0.10 0.03 5.67 -51.93 -0.29 -0.26 16 30 H 0.12 0.01 7.96 -51.93 -0.41 -0.40 16 31 H 0.38 -0.46 8.70 45.56 0.40 -0.07 16 32 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16 33 H -0.27 -1.08 7.11 56.52 0.40 -0.68 16 34 H 0.41 -1.10 8.83 -40.82 -0.36 -1.46 16 35 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 36 H 0.10 -0.33 8.09 -51.93 -0.42 -0.75 16 37 H 0.08 0.00 8.08 -51.93 -0.42 -0.42 16 38 H 0.08 0.01 8.08 -51.93 -0.42 -0.41 16 39 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 40 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 41 H 0.13 -0.25 8.06 -52.49 -0.42 -0.68 16 42 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 43 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 44 H 0.12 -0.24 7.44 -51.93 -0.39 -0.63 16 45 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 LS Contribution 393.38 15.07 5.93 5.93 Total: 0.00 -7.30 393.38 -13.50 -20.80 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: -6.11 Total: -12.61 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -4.11 Total: -3.19 kcal Atomic # 7 Polarization: 0.02 SS G_CDS: -0.40 Total: -0.38 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: -1.05 Total: -3.66 kcal Atomic # 14 Polarization: 0.84 SS G_CDS: -5.42 Total: -4.58 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.33 Total: -2.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -7.30 -13.50 -20.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12636048_15704122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.959 kcal (2) G-P(sol) polarization free energy of solvation -7.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds