Wall clock time and date at job start Mon Mar 8 2021 03:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33332 * 125.95253 * 2 1 4 4 C 1.50700 * 122.70721 * 0.02562 * 3 2 1 5 5 O 1.42891 * 109.47427 * 44.19484 * 4 3 2 6 6 Si 1.86311 * 109.46957 * 164.19532 * 4 3 2 7 7 N 1.32119 * 114.58169 * 179.97438 * 3 2 1 8 8 C 1.29695 * 116.86191 * 0.02562 * 7 3 2 9 9 N 1.38615 * 124.94351 * 179.97438 * 8 7 3 10 10 C 1.46497 * 119.99487 * 179.97438 * 9 8 7 11 11 H 1.09000 * 112.90966 * 336.24998 * 10 9 8 12 12 C 1.53788 * 113.61179 * 107.50294 * 10 9 8 13 13 C 1.53785 * 87.07736 * 89.11571 * 12 10 9 14 14 H 1.08998 * 113.69012 * 270.86893 * 13 12 10 15 15 C 1.50703 * 113.61278 * 139.98369 * 13 12 10 16 16 O 1.20832 * 119.99657 * 262.50205 * 15 13 12 17 17 O 1.34228 * 120.00092 * 82.49549 * 15 13 12 18 18 C 1.45204 * 116.99680 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.46936 * 180.02562 * 18 17 15 20 20 C 1.38231 * 120.00234 * 89.99932 * 19 18 17 21 21 C 1.38234 * 119.99999 * 180.02562 * 20 19 18 22 22 C 1.38235 * 120.00189 * 359.97438 * 21 20 19 23 23 C 1.38237 * 120.00057 * 359.97438 * 22 21 20 24 24 C 1.38237 * 119.99707 * 0.02562 * 23 22 21 25 25 C 1.53775 * 87.08483 * 25.43395 * 13 12 10 26 26 S 1.70962 * 110.10222 * 0.24104 * 8 7 3 27 27 H 1.09006 * 109.47166 * 84.36954 * 1 2 3 28 28 H 1.08992 * 109.47640 * 204.36915 * 1 2 3 29 29 H 1.09001 * 109.47347 * 324.37735 * 1 2 3 30 30 H 1.09003 * 109.47260 * 284.19178 * 4 3 2 31 31 H 0.96706 * 114.00121 * 59.99681 * 5 4 3 32 32 H 1.48500 * 109.99976 * 179.97438 * 6 4 3 33 33 H 1.48500 * 109.99857 * 301.31853 * 6 4 3 34 34 H 0.96999 * 120.00489 * 0.02562 * 9 8 7 35 35 H 1.08994 * 113.61624 * 334.56889 * 12 10 9 36 36 H 1.09000 * 113.61398 * 203.66220 * 12 10 9 37 37 H 1.09000 * 109.47365 * 60.00486 * 18 17 15 38 38 H 1.09003 * 109.46955 * 300.00088 * 18 17 15 39 39 H 1.08000 * 120.00055 * 359.97414 * 20 19 18 40 40 H 1.08002 * 120.00185 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99982 * 179.70027 * 22 21 20 42 42 H 1.07992 * 120.00600 * 180.02562 * 23 22 21 43 43 H 1.07994 * 120.00117 * 180.02562 * 24 23 22 44 44 H 1.09004 * 113.61606 * 89.11140 * 25 13 12 45 45 H 1.09003 * 113.61285 * 220.02031 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.6687 2.5750 0.9401 6 14 3.0898 3.6763 0.4788 7 7 3.5850 0.8188 0.0005 8 6 3.9314 -0.4310 0.0005 9 7 5.2384 -0.8926 0.0005 10 6 5.5065 -2.3329 0.0010 11 1 4.6807 -2.9180 0.4057 12 6 6.0357 -2.8614 -1.3428 13 6 7.4474 -2.5444 -0.8218 14 1 7.7799 -1.5310 -1.0466 15 6 8.4721 -3.5896 -1.1807 16 8 8.7686 -4.4449 -0.3803 17 8 9.0552 -3.5705 -2.3895 18 6 10.0324 -4.6082 -2.6664 19 6 10.5766 -4.4268 -4.0600 20 6 11.6944 -3.6409 -4.2687 21 6 12.1932 -3.4741 -5.5471 22 6 11.5744 -4.0937 -6.6167 23 6 10.4572 -4.8806 -6.4080 24 6 9.9584 -5.0473 -5.1295 25 6 6.8748 -2.7046 0.5964 26 16 2.5412 -1.4260 -0.0071 27 1 -0.3634 0.1008 -1.0228 28 1 -0.3634 -0.9360 0.4240 29 1 -0.3634 0.8354 0.5986 30 1 1.3741 2.7300 -0.9956 31 1 0.9236 2.3678 1.8497 32 1 2.5619 5.0643 0.4825 33 1 3.6210 3.3308 1.8218 34 1 5.9756 -0.2621 0.0009 35 1 5.7394 -2.2541 -2.1980 36 1 5.8551 -3.9255 -1.4951 37 1 9.5571 -5.5858 -2.5860 38 1 10.8481 -4.5405 -1.9465 39 1 12.1776 -3.1564 -3.4331 40 1 13.0663 -2.8597 -5.7102 41 1 11.9613 -3.9595 -7.6161 42 1 9.9740 -5.3650 -7.2435 43 1 9.0859 -5.6624 -4.9663 44 1 6.9236 -3.7259 0.9742 45 1 7.2559 -1.9707 1.3066 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12636048_15704122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:59:22 Heat of formation + Delta-G solvation = -3.025136 kcal Electronic energy + Delta-G solvation = -28284.190332 eV Core-core repulsion = 24168.468684 eV Total energy + Delta-G solvation = -4115.721648 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.04748 -41.09722 -40.38025 -39.74491 -37.87812 -37.49672 -35.23204 -33.21748 -32.53749 -31.88014 -29.42427 -28.40868 -26.90309 -26.77579 -25.62868 -24.39739 -23.57611 -22.95894 -22.23742 -20.95878 -20.49166 -19.06802 -18.81314 -18.26936 -17.98472 -17.60210 -17.53133 -17.01852 -16.72438 -16.58031 -16.08809 -15.98491 -15.78314 -15.52016 -15.16191 -14.72287 -14.40862 -14.32892 -14.27566 -14.05287 -13.93212 -13.80216 -13.64207 -13.47032 -13.44294 -13.30696 -12.95856 -12.78134 -12.46554 -12.17885 -12.11612 -12.02295 -11.84656 -11.82409 -11.72260 -11.43337 -10.98884 -10.67189 -10.50443 -10.08352 -9.90556 -9.87292 -8.67101 -4.77221 -0.04030 0.14096 0.15312 0.42027 0.72530 1.05421 1.35145 1.70104 1.70377 1.81636 1.84410 1.97191 2.83810 3.17326 3.26095 3.32360 3.47082 3.52815 3.57363 3.74825 3.75857 3.99244 4.09251 4.13816 4.17602 4.22483 4.28556 4.34804 4.36133 4.53004 4.54860 4.57077 4.64054 4.65864 4.78249 4.79752 4.87636 4.89371 4.96445 4.97843 5.07160 5.12812 5.31248 5.32711 5.48001 5.52279 5.55218 5.63357 6.00170 6.28030 6.42286 6.63055 6.89947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.246 4.246 3 C 0.053 3.947 4 C -0.041 4.041 5 O -0.533 6.533 6 Si 0.785 3.215 7 N -0.556 5.556 8 C 0.312 3.688 9 N -0.669 5.669 10 C 0.131 3.869 11 H 0.109 0.891 12 C -0.129 4.129 13 C -0.108 4.108 14 H 0.144 0.856 15 C 0.472 3.528 16 O -0.534 6.534 17 O -0.354 6.354 18 C 0.108 3.892 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.131 4.131 24 C -0.107 4.107 25 C -0.116 4.116 26 S 0.124 5.876 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.385 0.615 32 H -0.298 1.298 33 H -0.307 1.307 34 H 0.420 0.580 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.110 0.890 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -2.086 -3.295 4.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.369 4.369 3 C -0.077 4.077 4 C -0.154 4.154 5 O -0.340 6.340 6 Si 0.692 3.308 7 N -0.284 5.284 8 C -0.059 4.059 9 N -0.310 5.310 10 C 0.025 3.975 11 H 0.127 0.873 12 C -0.168 4.168 13 C -0.127 4.127 14 H 0.162 0.838 15 C 0.316 3.684 16 O -0.424 6.424 17 O -0.271 6.271 18 C 0.035 3.965 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.149 4.149 24 C -0.125 4.125 25 C -0.154 4.154 26 S 0.373 5.627 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.234 0.766 32 H -0.226 1.226 33 H -0.234 1.234 34 H 0.260 0.740 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.128 0.872 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.706 -2.488 -3.047 4.288 hybrid contribution -0.179 0.363 1.008 1.086 sum 1.527 -2.125 -2.039 3.317 Atomic orbital electron populations 1.20343 0.85935 1.03817 1.03397 1.25405 1.02039 0.93288 1.16156 1.20131 0.86825 0.97592 1.03186 1.24526 0.97867 0.95294 0.97674 1.86532 1.34857 1.91258 1.21370 0.92835 0.80701 0.73029 0.84230 1.65682 1.17345 1.17251 1.28082 1.23420 0.92522 0.91457 0.98475 1.43618 1.01383 1.06514 1.79462 1.21894 0.98844 0.79561 0.97186 0.87283 1.23487 0.91212 1.03525 0.98620 1.22778 0.92041 0.98363 0.99500 0.83842 1.24076 0.80194 0.85183 0.78912 1.90682 1.62184 1.38654 1.50840 1.86604 1.52671 1.52379 1.35399 1.21871 0.90601 0.90036 0.93961 1.19592 0.97261 1.00795 0.93753 1.21311 0.95856 0.97138 0.98255 1.21479 1.00846 1.00161 0.92431 1.21608 0.95543 0.96096 1.00155 1.21483 0.96941 0.99143 0.97329 1.21313 0.99507 0.99131 0.92505 1.23316 0.92655 1.04882 0.94547 1.83886 0.95682 1.09649 1.73501 0.90868 0.91268 0.88644 0.84922 0.76563 1.22639 1.23442 0.74043 0.88788 0.87650 0.90013 0.90174 0.84951 0.84014 0.83958 0.83973 0.84844 0.87217 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.00 9.97 71.23 0.71 0.71 16 2 C -0.25 -0.63 6.49 24.57 0.16 -0.47 16 3 C 0.05 0.20 6.00 41.41 0.25 0.45 16 4 C -0.04 -0.08 2.74 71.24 0.20 0.11 16 5 O -0.53 -1.19 10.21 -148.98 -1.52 -2.71 16 6 Si 0.79 2.44 31.88 68.60 2.19 4.62 16 7 N -0.56 -2.30 8.61 -189.85 -1.64 -3.94 16 8 C 0.31 0.32 8.24 179.32 1.48 1.80 16 9 N -0.67 2.79 5.42 -327.87 -1.78 1.01 16 10 C 0.13 -0.87 4.31 45.52 0.20 -0.67 16 11 H 0.11 -0.76 7.07 -2.39 -0.02 -0.77 16 12 C -0.13 0.87 7.43 31.12 0.23 1.10 16 13 C -0.11 0.57 4.14 -11.01 -0.05 0.52 16 14 H 0.14 -1.21 8.14 -2.39 -0.02 -1.23 16 15 C 0.47 0.78 7.48 71.24 0.53 1.31 16 16 O -0.53 -3.94 15.65 21.95 0.34 -3.59 16 17 O -0.35 -0.94 10.20 -51.40 -0.52 -1.46 16 18 C 0.11 0.20 5.59 71.24 0.40 0.59 16 19 C -0.11 -0.22 5.52 -19.86 -0.11 -0.33 16 20 C -0.11 -0.11 9.70 22.27 0.22 0.10 16 21 C -0.13 0.04 10.05 22.27 0.22 0.27 16 22 C -0.12 0.09 10.05 22.27 0.22 0.32 16 23 C -0.13 0.06 10.05 22.27 0.22 0.28 16 24 C -0.11 -0.09 9.70 22.27 0.22 0.13 16 25 C -0.12 0.72 7.15 31.12 0.22 0.94 16 26 S 0.12 0.00 21.69 -56.49 -1.23 -1.23 16 27 H 0.07 -0.05 8.14 -2.38 -0.02 -0.06 16 28 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.10 0.05 5.67 -2.39 -0.01 0.03 16 30 H 0.13 -0.02 7.96 -2.39 -0.02 -0.04 16 31 H 0.39 -0.81 8.70 -74.05 -0.64 -1.45 16 32 H -0.30 -2.52 7.11 99.48 0.71 -1.82 16 33 H -0.31 -2.98 7.11 99.48 0.71 -2.27 16 34 H 0.42 -2.59 8.83 -92.71 -0.82 -3.40 16 35 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.11 -0.73 8.09 -2.39 -0.02 -0.75 16 37 H 0.08 0.09 8.08 -2.39 -0.02 0.07 16 38 H 0.08 0.12 8.08 -2.39 -0.02 0.10 16 39 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 40 H 0.14 -0.60 8.06 -2.91 -0.02 -0.62 16 41 H 0.14 -0.70 8.06 -2.91 -0.02 -0.72 16 42 H 0.14 -0.63 8.06 -2.91 -0.02 -0.65 16 43 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 44 H 0.11 -0.45 7.44 -2.39 -0.02 -0.47 16 45 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 Total: 0.00 -17.03 393.38 0.78 -16.25 By element: Atomic # 1 Polarization: -15.72 SS G_CDS: -0.39 Total: -16.11 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.32 Total: 7.16 kcal Atomic # 7 Polarization: 0.49 SS G_CDS: -3.41 Total: -2.92 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -1.70 Total: -7.77 kcal Atomic # 14 Polarization: 2.44 SS G_CDS: 2.19 Total: 4.62 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.23 Total: -1.23 kcal Total: -17.03 0.78 -16.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12636048_15704122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.224 kcal (2) G-P(sol) polarization free energy of solvation -17.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds