Wall clock time and date at job start Mon Mar 8 2021 03:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86296 * 109.47389 * 2 1 4 4 C 1.50710 * 109.47184 * 119.99774 * 2 1 3 5 5 C 1.37978 * 120.32792 * 244.97995 * 4 2 1 6 6 N 1.32004 * 120.90389 * 179.76399 * 5 4 2 7 7 C 1.32344 * 121.64119 * 0.52277 * 6 5 4 8 8 N 1.39142 * 119.71451 * 179.75436 * 7 6 5 9 9 C 1.46503 * 120.00236 * 359.72269 * 8 7 6 10 10 H 1.08996 * 112.85276 * 336.20162 * 9 8 7 11 11 C 1.53783 * 113.68911 * 107.46855 * 9 8 7 12 12 C 1.53774 * 87.08417 * 89.12343 * 11 9 8 13 13 H 1.08999 * 113.69658 * 270.87676 * 12 11 9 14 14 C 1.50702 * 113.61505 * 139.97644 * 12 11 9 15 15 O 1.20826 * 120.00303 * 262.50853 * 14 12 11 16 16 O 1.34228 * 119.99603 * 82.50576 * 14 12 11 17 17 C 1.45206 * 117.00001 * 180.02562 * 16 14 12 18 18 C 1.50703 * 109.47147 * 180.02562 * 17 16 14 19 19 C 1.38237 * 119.99944 * 269.72682 * 18 17 16 20 20 C 1.38229 * 119.99729 * 179.74365 * 19 18 17 21 21 C 1.38236 * 120.00120 * 0.52952 * 20 19 18 22 22 C 1.38238 * 120.00193 * 359.74795 * 21 20 19 23 23 C 1.38232 * 119.99467 * 359.97438 * 22 21 20 24 24 C 1.53787 * 113.61513 * 205.00074 * 9 8 7 25 25 C 1.39343 * 120.56376 * 359.47586 * 7 6 5 26 26 F 1.35100 * 120.47062 * 180.27488 * 25 7 6 27 27 C 1.38441 * 119.05658 * 0.25484 * 25 7 6 28 28 H 0.96709 * 113.99946 * 300.00381 * 1 2 3 29 29 H 1.08996 * 109.47598 * 239.99574 * 2 1 3 30 30 H 1.48504 * 109.99855 * 300.00184 * 3 2 1 31 31 H 1.48503 * 110.00192 * 61.31508 * 3 2 1 32 32 H 1.08001 * 119.55037 * 0.02562 * 5 4 2 33 33 H 0.97003 * 119.99839 * 179.72925 * 8 7 6 34 34 H 1.09003 * 113.61017 * 334.57504 * 11 9 8 35 35 H 1.08995 * 113.61475 * 203.67975 * 11 9 8 36 36 H 1.09001 * 109.47157 * 299.99890 * 17 16 14 37 37 H 1.09004 * 109.47122 * 60.00023 * 17 16 14 38 38 H 1.08000 * 119.99953 * 0.02562 * 19 18 17 39 39 H 1.08004 * 120.00292 * 180.29616 * 20 19 18 40 40 H 1.08003 * 120.00023 * 179.76924 * 21 20 19 41 41 H 1.07996 * 120.00488 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.00073 * 180.02562 * 23 22 21 43 43 H 1.08996 * 113.61240 * 156.25681 * 24 9 8 44 44 H 1.09001 * 113.68699 * 25.36338 * 24 9 8 45 45 H 1.08000 * 120.75490 * 180.02562 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 2.6384 -0.0202 2.1936 6 7 3.0798 -0.6301 3.2780 7 6 2.8732 -1.9214 3.4810 8 7 3.3607 -2.5247 4.6361 9 6 4.1044 -1.7321 5.6185 10 1 4.5631 -0.8432 5.1854 11 6 3.3176 -1.4523 6.9098 12 6 3.8965 -2.7686 7.4546 13 1 3.2862 -3.6427 7.2275 14 6 4.2988 -2.6966 8.9052 15 8 5.4522 -2.4948 9.2030 16 8 3.3755 -2.8565 9.8664 17 6 3.8345 -2.7741 11.2415 18 6 2.6678 -2.9772 12.1735 19 6 1.9294 -1.8906 12.6037 20 6 0.8560 -2.0776 13.4544 21 6 0.5276 -3.3499 13.8835 22 6 1.2695 -4.4360 13.4579 23 6 2.3393 -4.2496 12.6026 24 6 5.0684 -2.5653 6.4797 25 6 2.1666 -2.6808 2.5505 26 9 1.9520 -3.9978 2.7623 27 6 1.6872 -2.0665 1.4062 28 1 -0.3933 0.4418 0.7651 29 1 1.7923 -0.5139 -0.8899 30 1 1.5614 2.4678 -1.2085 31 1 1.5878 2.4586 1.2242 32 1 2.8299 1.0343 2.0604 33 1 3.2083 -3.4701 4.7910 34 1 2.2361 -1.4734 6.7754 35 1 3.6610 -0.5685 7.4475 36 1 4.5820 -3.5466 11.4220 37 1 4.2754 -1.7932 11.4192 38 1 2.1885 -0.8961 12.2716 39 1 0.2762 -1.2292 13.7868 40 1 -0.3088 -3.4956 14.5511 41 1 1.0127 -5.4301 13.7928 42 1 2.9187 -5.0980 12.2697 43 1 5.8904 -1.9859 6.8999 44 1 5.4012 -3.4853 5.9991 45 1 1.1358 -2.6288 0.6672 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12636048_17656566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:59:27 Heat of formation + Delta-G solvation = -51.065258 kcal Electronic energy + Delta-G solvation = -30243.169953 eV Core-core repulsion = 25722.296526 eV Total energy + Delta-G solvation = -4520.873427 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.94745 -42.07599 -41.39728 -40.34390 -39.67585 -38.04007 -37.51898 -35.35176 -33.26298 -33.17753 -31.90478 -31.28221 -28.61048 -27.06202 -26.85509 -26.24369 -24.91876 -23.59924 -23.03663 -22.67506 -22.20070 -20.47138 -19.66574 -18.91195 -18.50426 -18.28778 -18.09530 -17.61923 -17.57433 -17.29529 -17.00081 -16.47888 -16.20924 -16.09018 -15.96181 -15.85029 -15.49112 -15.28683 -14.82751 -14.69935 -14.40237 -14.33241 -14.14926 -14.06170 -13.94576 -13.73390 -13.49769 -13.44236 -13.34058 -12.85270 -12.63881 -12.21842 -12.13993 -12.06532 -11.96999 -11.81446 -11.74219 -11.41284 -11.20737 -10.75722 -10.64020 -10.53182 -9.92998 -9.89566 -8.80865 -4.87064 -0.08114 0.10372 0.12783 0.39628 1.03415 1.33179 1.63840 1.68266 1.89834 2.01251 2.52762 2.81620 3.02126 3.19689 3.25762 3.36636 3.44686 3.52597 3.61328 3.69104 3.72628 3.77543 3.86413 3.96055 4.01481 4.07197 4.15241 4.20186 4.29741 4.43721 4.50727 4.52581 4.54791 4.63421 4.64664 4.70454 4.75515 4.85329 4.89162 4.94026 4.99986 5.04102 5.04799 5.28541 5.42328 5.45603 5.50058 5.52712 5.94954 5.97827 6.16995 6.51806 6.60967 6.94498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.068 4.068 3 Si 0.765 3.235 4 C -0.200 4.200 5 C 0.146 3.854 6 N -0.523 5.523 7 C 0.385 3.615 8 N -0.697 5.697 9 C 0.143 3.857 10 H 0.114 0.886 11 C -0.128 4.128 12 C -0.109 4.109 13 H 0.139 0.861 14 C 0.472 3.528 15 O -0.533 6.533 16 O -0.355 6.355 17 C 0.108 3.892 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.034 4.034 26 F -0.140 7.140 27 C -0.040 4.040 28 H 0.387 0.613 29 H 0.129 0.871 30 H -0.302 1.302 31 H -0.275 1.275 32 H 0.182 0.818 33 H 0.418 0.582 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 0.673 0.239 0.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.177 4.177 3 Si 0.669 3.331 4 C -0.206 4.206 5 C -0.011 4.011 6 N -0.240 5.240 7 C 0.147 3.853 8 N -0.329 5.329 9 C 0.037 3.963 10 H 0.132 0.868 11 C -0.167 4.167 12 C -0.128 4.128 13 H 0.157 0.843 14 C 0.316 3.684 15 O -0.423 6.423 16 O -0.272 6.272 17 C 0.035 3.965 18 C -0.114 4.114 19 C -0.125 4.125 20 C -0.149 4.149 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.126 4.126 24 C -0.158 4.158 25 C -0.060 4.060 26 F -0.119 7.119 27 C -0.066 4.066 28 H 0.236 0.764 29 H 0.147 0.853 30 H -0.230 1.230 31 H -0.201 1.201 32 H 0.199 0.801 33 H 0.256 0.744 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.592 1.767 0.602 1.958 hybrid contribution -1.590 -1.415 0.307 2.151 sum -0.998 0.351 0.910 1.395 Atomic orbital electron populations 1.86592 1.18536 1.80349 1.50226 1.25032 0.83316 1.11621 0.97751 0.94133 0.90192 0.71832 0.76904 1.20902 1.05302 0.94179 1.00187 1.22732 0.91029 1.00375 0.86978 1.67352 1.25518 1.07254 1.23902 1.18505 0.90581 0.89125 0.87091 1.44236 1.58721 1.12008 1.17976 1.21667 0.91883 0.95505 0.87276 0.86759 1.23403 1.01683 0.95323 0.96262 1.22804 1.01828 1.03103 0.85100 0.84301 1.24087 0.83338 0.71432 0.89495 1.90671 1.21417 1.45910 1.84281 1.86604 1.41604 1.82185 1.16799 1.21880 0.94619 1.03359 0.76663 1.19591 0.98106 0.94613 0.99102 1.21311 0.95072 0.98891 0.97258 1.21483 0.97287 0.98364 0.97740 1.21612 0.99812 0.92687 0.99255 1.21482 0.95370 1.00310 0.97706 1.21311 0.97555 0.96455 0.97250 1.23342 0.96157 1.02197 0.94085 1.18112 1.09397 0.79431 0.99042 1.91475 1.93778 1.31643 1.94990 1.21453 0.95327 0.94907 0.94951 0.76402 0.85306 1.23041 1.20115 0.80149 0.74358 0.89793 0.88335 0.90117 0.90055 0.84925 0.83940 0.83875 0.83941 0.84950 0.87635 0.88751 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.06 12.84 -148.98 -1.91 -1.85 16 2 C -0.07 0.25 2.82 71.24 0.20 0.45 16 3 Si 0.76 -3.77 29.91 68.60 2.05 -1.72 16 4 C -0.20 0.45 5.36 -19.76 -0.11 0.35 16 5 C 0.15 -0.29 9.83 84.61 0.83 0.54 16 6 N -0.52 -0.70 9.13 -193.04 -1.76 -2.46 16 7 C 0.39 0.53 7.49 133.08 1.00 1.53 16 8 N -0.70 1.37 5.42 -321.77 -1.74 -0.37 16 9 C 0.14 -0.42 4.35 45.52 0.20 -0.22 16 10 H 0.11 -0.19 7.41 -2.39 -0.02 -0.20 16 11 C -0.13 0.36 7.43 31.12 0.23 0.59 16 12 C -0.11 0.24 4.14 -11.01 -0.05 0.20 16 13 H 0.14 -0.75 8.14 -2.39 -0.02 -0.77 16 14 C 0.47 1.93 7.48 71.24 0.53 2.46 16 15 O -0.53 -5.08 15.65 21.96 0.34 -4.74 16 16 O -0.36 -1.68 10.20 -51.40 -0.52 -2.20 16 17 C 0.11 0.36 5.59 71.24 0.40 0.76 16 18 C -0.11 -0.37 5.52 -19.86 -0.11 -0.48 16 19 C -0.11 -0.22 9.70 22.27 0.22 0.00 16 20 C -0.13 -0.06 10.05 22.27 0.22 0.17 16 21 C -0.12 0.01 10.05 22.27 0.22 0.23 16 22 C -0.13 -0.06 10.05 22.27 0.22 0.16 16 23 C -0.11 -0.22 9.70 22.27 0.22 0.00 16 24 C -0.12 0.38 7.15 31.12 0.22 0.61 16 25 C -0.03 -0.06 7.35 22.58 0.17 0.10 16 26 F -0.14 -0.47 16.65 44.97 0.75 0.28 16 27 C -0.04 0.00 9.82 22.48 0.22 0.22 16 28 H 0.39 -2.15 8.70 -74.05 -0.64 -2.79 16 29 H 0.13 -0.71 7.96 -2.39 -0.02 -0.72 16 30 H -0.30 -1.02 7.11 99.48 0.71 -0.32 16 31 H -0.27 0.49 7.01 99.48 0.70 1.19 16 32 H 0.18 -1.17 4.84 -2.91 -0.01 -1.19 16 33 H 0.42 -1.75 8.18 -92.71 -0.76 -2.51 16 34 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.10 -0.25 8.09 -2.39 -0.02 -0.27 16 36 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 37 H 0.08 0.22 8.08 -2.38 -0.02 0.20 16 38 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 39 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 40 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 41 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 42 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 43 H 0.11 -0.10 7.43 -2.39 -0.02 -0.12 16 44 H 0.09 -0.46 8.14 -2.39 -0.02 -0.47 16 45 H 0.16 -0.26 8.06 -2.91 -0.02 -0.29 16 Total: 0.00 -17.32 389.34 1.72 -15.60 By element: Atomic # 1 Polarization: -9.87 SS G_CDS: -0.32 Total: -10.19 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 4.84 Total: 7.66 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -3.51 Total: -2.83 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -2.09 Total: -8.79 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.75 Total: 0.28 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.05 Total: -1.72 kcal Total: -17.32 1.72 -15.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12636048_17656566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.468 kcal (2) G-P(sol) polarization free energy of solvation -17.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds