Wall clock time and date at job start Mon Mar 8 2021 06:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86306 * 109.46872 * 2 1 4 4 C 1.50696 * 109.47340 * 119.99774 * 2 1 3 5 5 C 1.38608 * 120.71974 * 65.00182 * 4 2 1 6 6 N 1.32273 * 119.19912 * 179.97438 * 5 4 2 7 7 C 1.32499 * 120.73804 * 359.97438 * 6 5 4 8 8 N 1.38405 * 119.21460 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99936 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47154 * 324.99537 * 9 8 7 11 11 C 1.53001 * 109.47277 * 84.99968 * 9 8 7 12 12 C 1.53005 * 109.47070 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47152 * 299.99874 * 12 11 9 14 14 H 1.08995 * 109.47159 * 300.00341 * 13 12 11 15 15 O 1.42897 * 109.46769 * 180.02562 * 13 12 11 16 16 C 1.35684 * 116.99905 * 90.00561 * 15 13 12 17 17 C 1.39065 * 120.07042 * 179.97438 * 16 15 13 18 18 N 1.32000 * 119.91914 * 179.97438 * 17 16 15 19 19 C 1.32206 * 120.06739 * 359.97438 * 18 17 16 20 20 C 1.38241 * 120.13907 * 359.97438 * 19 18 17 21 21 N 1.32206 * 120.08311 * 359.79184 * 20 19 18 22 22 C 1.53001 * 109.47030 * 60.00101 * 13 12 11 23 23 C 1.52997 * 109.47430 * 300.00183 * 22 13 12 24 24 N 1.32492 * 121.56562 * 0.27541 * 7 6 5 25 25 C 1.32277 * 120.74235 * 359.44583 * 24 7 6 26 26 H 0.96703 * 113.99747 * 299.99891 * 1 2 3 27 27 H 1.09001 * 109.47195 * 240.00273 * 2 1 3 28 28 H 1.48500 * 109.99977 * 299.99924 * 3 2 1 29 29 H 1.48492 * 110.00055 * 61.32203 * 3 2 1 30 30 H 1.08000 * 120.40053 * 359.95357 * 5 4 2 31 31 H 0.97000 * 120.00566 * 359.72591 * 8 7 6 32 32 H 1.08992 * 109.47084 * 299.99869 * 11 9 8 33 33 H 1.09000 * 109.46920 * 60.00327 * 11 9 8 34 34 H 1.08998 * 109.47023 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.46989 * 60.00360 * 12 11 9 36 36 H 1.08002 * 120.04140 * 359.97438 * 17 16 15 37 37 H 1.07993 * 119.93217 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.95562 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47383 * 179.97438 * 22 13 12 40 40 H 1.09000 * 109.46920 * 59.99631 * 22 13 12 41 41 H 1.09005 * 109.46516 * 300.00093 * 23 22 13 42 42 H 1.08998 * 109.47383 * 179.97438 * 23 22 13 43 43 H 1.07994 * 120.40211 * 180.25008 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.6926 -2.0633 1.4140 6 7 2.1479 -2.6567 2.5050 7 6 2.8251 -1.9726 3.4155 8 7 3.2874 -2.6253 4.5451 9 6 4.0375 -1.8855 5.5630 10 1 4.6514 -1.1248 5.0808 11 6 3.0599 -1.2145 6.5299 12 6 3.8434 -0.4414 7.5927 13 6 4.7434 -1.4072 8.3660 14 1 4.1300 -2.1680 8.8486 15 8 5.4747 -0.6852 9.3589 16 6 4.9000 -0.5665 10.5823 17 6 5.5560 0.1228 11.5964 18 7 4.9940 0.2369 12.7853 19 6 3.8087 -0.3029 13.0122 20 6 3.1538 -0.9878 12.0057 21 7 3.7093 -1.1016 10.8114 22 6 5.7211 -2.0782 7.3991 23 6 4.9377 -2.8513 6.3364 24 7 3.0660 -0.6776 3.2727 25 6 2.6435 -0.0252 2.2024 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5614 2.4679 -1.2085 29 1 1.5879 2.4586 1.2242 30 1 1.1413 -2.6262 0.6753 31 1 3.1109 -3.5716 4.6649 32 1 2.4190 -0.5261 5.9791 33 1 2.4461 -1.9753 7.0122 34 1 3.1469 0.0362 8.2818 35 1 4.4568 0.3194 7.1100 36 1 6.5242 0.5643 11.4115 37 1 3.3507 -0.2079 13.9856 38 1 2.1857 -1.4279 12.1944 39 1 6.3625 -2.7660 7.9501 40 1 6.3345 -1.3174 6.9165 41 1 4.3242 -3.6121 6.8191 42 1 5.6342 -3.3289 5.6473 43 1 2.8464 1.0295 2.0897 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12806124_12175864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:01 Heat of formation + Delta-G solvation = 44.717302 kcal Electronic energy + Delta-G solvation = -27384.077473 eV Core-core repulsion = 23431.904446 eV Total energy + Delta-G solvation = -3952.173027 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33358 -42.09840 -40.52669 -38.86716 -38.02650 -35.76780 -35.06417 -34.68636 -32.72422 -32.03365 -31.72874 -29.60859 -26.64559 -25.98562 -25.69987 -25.02799 -23.94466 -23.44672 -22.64669 -21.26016 -19.60434 -19.36885 -18.77058 -18.70830 -18.15908 -17.78779 -17.01385 -16.78961 -16.58568 -16.15586 -16.03528 -15.85082 -15.78339 -15.52307 -15.33649 -14.92932 -14.65051 -14.29352 -14.26227 -13.99613 -13.79424 -13.42701 -13.31616 -13.21609 -12.81306 -12.66123 -12.36635 -12.30776 -12.21978 -12.06920 -11.85211 -11.76686 -11.69122 -11.39267 -11.11011 -10.73225 -10.25421 -10.01431 -9.74197 -9.12914 -5.04115 -0.19505 0.06485 0.09250 0.16591 1.20507 1.50319 1.66519 1.86927 1.90017 2.66407 2.81867 2.97740 3.13478 3.28577 3.30993 3.43894 3.47553 3.54838 3.60666 3.69968 3.72633 3.86470 3.99596 4.01215 4.05262 4.17562 4.21230 4.22797 4.28612 4.32199 4.45823 4.52411 4.54933 4.63289 4.76089 4.78997 4.86733 4.95430 5.02452 5.02619 5.14884 5.19628 5.31589 5.77241 6.00403 6.03862 6.17540 6.32881 6.39877 6.71072 7.29579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.053 4.053 3 Si 0.679 3.321 4 C -0.293 4.293 5 C 0.224 3.776 6 N -0.569 5.569 7 C 0.569 3.431 8 N -0.692 5.692 9 C 0.158 3.842 10 H 0.097 0.903 11 C -0.123 4.123 12 C -0.129 4.129 13 C 0.087 3.913 14 H 0.091 0.909 15 O -0.291 6.291 16 C 0.278 3.722 17 C 0.040 3.960 18 N -0.403 5.403 19 C 0.003 3.997 20 C 0.096 3.904 21 N -0.498 5.498 22 C -0.111 4.111 23 C -0.123 4.123 24 N -0.561 5.561 25 C 0.197 3.803 26 H 0.376 0.624 27 H 0.120 0.880 28 H -0.253 1.253 29 H -0.258 1.258 30 H 0.170 0.830 31 H 0.414 0.586 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 -0.517 0.278 1.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.164 4.164 3 Si 0.580 3.420 4 C -0.301 4.301 5 C 0.055 3.945 6 N -0.291 5.291 7 C 0.212 3.788 8 N -0.327 5.327 9 C 0.053 3.947 10 H 0.115 0.885 11 C -0.162 4.162 12 C -0.168 4.168 13 C 0.031 3.969 14 H 0.109 0.891 15 O -0.197 6.197 16 C 0.096 3.904 17 C -0.123 4.123 18 N -0.118 5.118 19 C -0.155 4.155 20 C -0.063 4.063 21 N -0.227 5.227 22 C -0.150 4.150 23 C -0.161 4.161 24 N -0.283 5.283 25 C 0.030 3.970 26 H 0.223 0.777 27 H 0.138 0.862 28 H -0.178 1.178 29 H -0.183 1.183 30 H 0.187 0.813 31 H 0.252 0.748 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.194 0.806 37 H 0.191 0.809 38 H 0.191 0.809 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.829 -0.287 0.585 1.942 hybrid contribution -1.810 -0.244 -0.173 1.835 sum 0.019 -0.531 0.412 0.672 Atomic orbital electron populations 1.86614 1.17788 1.79863 1.49323 1.24668 0.83740 1.10536 0.97472 0.95180 0.91508 0.74588 0.80713 1.21640 1.09188 0.97728 1.01539 1.22842 0.89123 0.90960 0.91539 1.67994 1.16545 1.40064 1.04493 1.19392 0.86961 0.85557 0.86849 1.44245 1.58541 1.12112 1.17817 1.21058 0.92085 0.94173 0.87370 0.88478 1.21870 0.98216 0.99945 0.96190 1.21890 0.98682 0.98455 0.97757 1.22525 0.93343 0.94140 0.86897 0.89107 1.86331 1.45060 1.71055 1.17214 1.20979 0.89742 0.92326 0.87385 1.22961 1.02046 0.99811 0.87483 1.68485 1.09638 1.14341 1.19310 1.23637 0.92536 0.97815 1.01553 1.23568 1.00297 0.94931 0.87508 1.68055 1.09993 1.20982 1.23708 1.21533 0.97660 1.00011 0.95762 1.21762 0.98808 0.98044 0.97522 1.67942 1.27098 1.08220 1.25046 1.22844 0.88170 0.99451 0.86576 0.77682 0.86214 1.17764 1.18270 0.81300 0.74831 0.90800 0.91514 0.91154 0.90607 0.80629 0.80926 0.80935 0.90227 0.90125 0.90830 0.89978 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.10 12.85 -35.23 -0.45 -0.55 16 2 C -0.05 0.07 2.83 36.00 0.10 0.17 16 3 Si 0.68 -1.31 29.95 -169.99 -5.09 -6.40 16 4 C -0.29 0.09 5.36 -104.35 -0.56 -0.47 16 5 C 0.22 0.18 10.99 -17.23 -0.19 -0.01 16 6 N -0.57 -1.40 10.46 -13.93 -0.15 -1.55 16 7 C 0.57 1.20 8.40 -322.80 -2.71 -1.52 16 8 N -0.69 -0.01 5.22 -55.79 -0.29 -0.30 16 9 C 0.16 -0.16 2.44 -67.93 -0.17 -0.33 16 10 H 0.10 0.00 7.51 -51.93 -0.39 -0.39 16 11 C -0.12 0.06 5.51 -26.73 -0.15 -0.09 16 12 C -0.13 0.03 5.54 -26.73 -0.15 -0.12 16 13 C 0.09 -0.02 2.38 -26.73 -0.06 -0.09 16 14 H 0.09 0.04 7.00 -51.93 -0.36 -0.33 16 15 O -0.29 -0.37 9.77 -18.75 -0.18 -0.56 16 16 C 0.28 0.48 7.46 -16.94 -0.13 0.36 16 17 C 0.04 0.05 11.18 -17.17 -0.19 -0.14 16 18 N -0.40 -0.82 10.49 -12.93 -0.14 -0.95 16 19 C 0.00 0.00 11.21 -17.39 -0.20 -0.20 16 20 C 0.10 -0.05 11.22 -17.39 -0.20 -0.24 16 21 N -0.50 -0.75 8.83 -13.13 -0.12 -0.86 16 22 C -0.11 0.20 5.57 -26.73 -0.15 0.05 16 23 C -0.12 0.31 5.39 -26.73 -0.14 0.16 16 24 N -0.56 -1.04 9.21 -13.93 -0.13 -1.17 16 25 C 0.20 0.02 9.92 -17.22 -0.17 -0.15 16 26 H 0.38 -0.88 8.70 45.56 0.40 -0.48 16 27 H 0.12 -0.27 7.96 -51.93 -0.41 -0.69 16 28 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 29 H -0.26 0.02 7.02 56.52 0.40 0.42 16 30 H 0.17 -0.16 8.06 -52.49 -0.42 -0.59 16 31 H 0.41 -0.44 8.72 -40.82 -0.36 -0.79 16 32 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.18 -0.13 8.06 -52.49 -0.42 -0.55 16 37 H 0.17 -0.53 8.06 -52.49 -0.42 -0.96 16 38 H 0.17 -0.64 8.06 -52.48 -0.42 -1.06 16 39 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 40 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 41 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 42 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 43 H 0.17 -0.34 5.01 -52.49 -0.26 -0.60 16 LS Contribution 358.60 15.07 5.40 5.40 Total: 0.00 -7.66 358.60 -11.86 -19.52 By element: Atomic # 1 Polarization: -4.32 SS G_CDS: -5.67 Total: -9.98 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -5.06 Total: -2.59 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: -0.82 Total: -4.83 kcal Atomic # 8 Polarization: -0.48 SS G_CDS: -0.64 Total: -1.11 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.09 Total: -6.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -7.66 -11.86 -19.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12806124_12175864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.241 kcal (2) G-P(sol) polarization free energy of solvation -7.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds