Wall clock time and date at job start Mon Mar 8 2021 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86306 * 109.46872 * 2 1 4 4 C 1.50696 * 109.47340 * 119.99774 * 2 1 3 5 5 C 1.38608 * 120.71974 * 65.00182 * 4 2 1 6 6 N 1.32273 * 119.19912 * 179.97438 * 5 4 2 7 7 C 1.32499 * 120.73804 * 359.97438 * 6 5 4 8 8 N 1.38405 * 119.21460 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99936 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47154 * 324.99537 * 9 8 7 11 11 C 1.53001 * 109.47277 * 84.99968 * 9 8 7 12 12 C 1.53005 * 109.47070 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47152 * 299.99874 * 12 11 9 14 14 H 1.08995 * 109.47159 * 300.00341 * 13 12 11 15 15 O 1.42897 * 109.46769 * 180.02562 * 13 12 11 16 16 C 1.35684 * 116.99905 * 90.00561 * 15 13 12 17 17 C 1.39065 * 120.07042 * 179.97438 * 16 15 13 18 18 N 1.32000 * 119.91914 * 179.97438 * 17 16 15 19 19 C 1.32206 * 120.06739 * 359.97438 * 18 17 16 20 20 C 1.38241 * 120.13907 * 359.97438 * 19 18 17 21 21 N 1.32206 * 120.08311 * 359.79184 * 20 19 18 22 22 C 1.53001 * 109.47030 * 60.00101 * 13 12 11 23 23 C 1.52997 * 109.47430 * 300.00183 * 22 13 12 24 24 N 1.32492 * 121.56562 * 0.27541 * 7 6 5 25 25 C 1.32277 * 120.74235 * 359.44583 * 24 7 6 26 26 H 0.96703 * 113.99747 * 299.99891 * 1 2 3 27 27 H 1.09001 * 109.47195 * 240.00273 * 2 1 3 28 28 H 1.48500 * 109.99977 * 299.99924 * 3 2 1 29 29 H 1.48492 * 110.00055 * 61.32203 * 3 2 1 30 30 H 1.08000 * 120.40053 * 359.95357 * 5 4 2 31 31 H 0.97000 * 120.00566 * 359.72591 * 8 7 6 32 32 H 1.08992 * 109.47084 * 299.99869 * 11 9 8 33 33 H 1.09000 * 109.46920 * 60.00327 * 11 9 8 34 34 H 1.08998 * 109.47023 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.46989 * 60.00360 * 12 11 9 36 36 H 1.08002 * 120.04140 * 359.97438 * 17 16 15 37 37 H 1.07993 * 119.93217 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.95562 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47383 * 179.97438 * 22 13 12 40 40 H 1.09000 * 109.46920 * 59.99631 * 22 13 12 41 41 H 1.09005 * 109.46516 * 300.00093 * 23 22 13 42 42 H 1.08998 * 109.47383 * 179.97438 * 23 22 13 43 43 H 1.07994 * 120.40211 * 180.25008 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.6926 -2.0633 1.4140 6 7 2.1479 -2.6567 2.5050 7 6 2.8251 -1.9726 3.4155 8 7 3.2874 -2.6253 4.5451 9 6 4.0375 -1.8855 5.5630 10 1 4.6514 -1.1248 5.0808 11 6 3.0599 -1.2145 6.5299 12 6 3.8434 -0.4414 7.5927 13 6 4.7434 -1.4072 8.3660 14 1 4.1300 -2.1680 8.8486 15 8 5.4747 -0.6852 9.3589 16 6 4.9000 -0.5665 10.5823 17 6 5.5560 0.1228 11.5964 18 7 4.9940 0.2369 12.7853 19 6 3.8087 -0.3029 13.0122 20 6 3.1538 -0.9878 12.0057 21 7 3.7093 -1.1016 10.8114 22 6 5.7211 -2.0782 7.3991 23 6 4.9377 -2.8513 6.3364 24 7 3.0660 -0.6776 3.2727 25 6 2.6435 -0.0252 2.2024 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5614 2.4679 -1.2085 29 1 1.5879 2.4586 1.2242 30 1 1.1413 -2.6262 0.6753 31 1 3.1109 -3.5716 4.6649 32 1 2.4190 -0.5261 5.9791 33 1 2.4461 -1.9753 7.0122 34 1 3.1469 0.0362 8.2818 35 1 4.4568 0.3194 7.1100 36 1 6.5242 0.5643 11.4115 37 1 3.3507 -0.2079 13.9856 38 1 2.1857 -1.4279 12.1944 39 1 6.3625 -2.7660 7.9501 40 1 6.3345 -1.3174 6.9165 41 1 4.3242 -3.6121 6.8191 42 1 5.6342 -3.3289 5.6473 43 1 2.8464 1.0295 2.0897 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12806124_12175864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:00 Heat of formation + Delta-G solvation = 45.417438 kcal Electronic energy + Delta-G solvation = -27384.047113 eV Core-core repulsion = 23431.904446 eV Total energy + Delta-G solvation = -3952.142667 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.33963 -42.12308 -40.50861 -38.85780 -38.00019 -35.75673 -35.08870 -34.73607 -32.72034 -31.98481 -31.70611 -29.58292 -26.62401 -25.99682 -25.70635 -25.03218 -23.89111 -23.43022 -22.63618 -21.21852 -19.61732 -19.36815 -18.78113 -18.71254 -18.14239 -17.74771 -17.02064 -16.78822 -16.57270 -16.13819 -15.98844 -15.80906 -15.77294 -15.48010 -15.31305 -14.92312 -14.63570 -14.28047 -14.21591 -14.01782 -13.75584 -13.37795 -13.25675 -13.21208 -12.81034 -12.66201 -12.37315 -12.26974 -12.22765 -12.06549 -11.91918 -11.75526 -11.67088 -11.36925 -11.07979 -10.70365 -10.26384 -10.05362 -9.74188 -9.13314 -4.91676 -0.18401 0.04242 0.06330 0.13445 1.31231 1.59165 1.67882 1.88132 1.97164 2.66111 2.77836 3.01551 3.15023 3.35339 3.42575 3.46702 3.53411 3.60276 3.64704 3.69695 3.77106 3.91026 4.03888 4.10347 4.14775 4.21257 4.22909 4.29217 4.36052 4.37122 4.52883 4.58029 4.64662 4.71467 4.78143 4.84374 4.97392 5.02232 5.04542 5.08041 5.20511 5.23343 5.35096 5.75750 6.02058 6.03964 6.17826 6.39605 6.48073 6.70685 7.26552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.056 4.056 3 Si 0.758 3.242 4 C -0.284 4.284 5 C 0.213 3.787 6 N -0.589 5.589 7 C 0.554 3.446 8 N -0.687 5.687 9 C 0.164 3.836 10 H 0.088 0.912 11 C -0.113 4.113 12 C -0.121 4.121 13 C 0.089 3.911 14 H 0.085 0.915 15 O -0.299 6.299 16 C 0.263 3.737 17 C 0.028 3.972 18 N -0.429 5.429 19 C 0.002 3.998 20 C 0.095 3.905 21 N -0.513 5.513 22 C -0.107 4.107 23 C -0.114 4.114 24 N -0.576 5.576 25 C 0.191 3.809 26 H 0.385 0.615 27 H 0.132 0.868 28 H -0.300 1.300 29 H -0.280 1.280 30 H 0.183 0.817 31 H 0.418 0.582 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.187 0.813 37 H 0.201 0.799 38 H 0.205 0.795 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 -0.980 0.421 1.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.166 4.166 3 Si 0.664 3.336 4 C -0.292 4.292 5 C 0.046 3.954 6 N -0.312 5.312 7 C 0.197 3.803 8 N -0.323 5.323 9 C 0.059 3.941 10 H 0.106 0.894 11 C -0.152 4.152 12 C -0.160 4.160 13 C 0.033 3.967 14 H 0.103 0.897 15 O -0.205 6.205 16 C 0.082 3.918 17 C -0.134 4.134 18 N -0.144 5.144 19 C -0.156 4.156 20 C -0.063 4.063 21 N -0.243 5.243 22 C -0.145 4.145 23 C -0.152 4.152 24 N -0.298 5.298 25 C 0.024 3.976 26 H 0.234 0.766 27 H 0.150 0.850 28 H -0.227 1.227 29 H -0.207 1.207 30 H 0.200 0.800 31 H 0.257 0.743 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.204 0.796 37 H 0.218 0.782 38 H 0.221 0.779 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.826 -0.767 0.730 2.111 hybrid contribution -1.896 -0.062 -0.206 1.908 sum -0.070 -0.829 0.524 0.983 Atomic orbital electron populations 1.86590 1.18551 1.80227 1.50098 1.24843 0.83165 1.11116 0.97497 0.94255 0.90242 0.72321 0.76829 1.21673 1.08597 0.97321 1.01613 1.23160 0.89124 0.91653 0.91478 1.68010 1.17295 1.40678 1.05191 1.19634 0.87348 0.85876 0.87395 1.44289 1.58282 1.12316 1.17437 1.21007 0.91799 0.94292 0.86993 0.89407 1.21752 0.98046 0.99477 0.95965 1.21788 0.98342 0.98414 0.97420 1.22566 0.93615 0.93759 0.86783 0.89736 1.86313 1.45429 1.71393 1.17389 1.21088 0.90142 0.92962 0.87624 1.23149 1.02663 1.00150 0.87485 1.68496 1.10846 1.15341 1.19691 1.24150 0.91858 0.96834 1.02783 1.24121 1.01202 0.94308 0.86715 1.68087 1.10076 1.21315 1.24774 1.21517 0.97385 1.00059 0.95508 1.21701 0.98647 0.97643 0.97232 1.67977 1.27739 1.08299 1.25824 1.23201 0.87891 1.00257 0.86240 0.76612 0.84994 1.22737 1.20683 0.80004 0.74321 0.92441 0.91546 0.92571 0.90845 0.79581 0.78226 0.77863 0.89710 0.90029 0.90051 0.89082 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.06 12.85 -148.98 -1.91 -1.97 16 2 C -0.06 0.18 2.83 71.23 0.20 0.38 16 3 Si 0.76 -3.07 29.95 68.60 2.05 -1.01 16 4 C -0.28 0.24 5.36 -19.69 -0.11 0.14 16 5 C 0.21 0.35 10.99 84.71 0.93 1.28 16 6 N -0.59 -3.13 10.46 -197.98 -2.07 -5.20 16 7 C 0.55 2.61 8.40 261.49 2.20 4.80 16 8 N -0.69 -0.28 5.22 -330.43 -1.72 -2.01 16 9 C 0.16 -0.28 2.44 44.99 0.11 -0.17 16 10 H 0.09 0.05 7.51 -2.39 -0.02 0.04 16 11 C -0.11 0.01 5.51 30.60 0.17 0.17 16 12 C -0.12 -0.07 5.54 30.60 0.17 0.10 16 13 C 0.09 0.01 2.38 30.59 0.07 0.08 16 14 H 0.08 0.12 7.00 -2.39 -0.02 0.11 16 15 O -0.30 -1.06 9.77 -90.02 -0.88 -1.94 16 16 C 0.26 1.15 7.46 84.79 0.63 1.78 16 17 C 0.03 0.10 11.18 84.87 0.95 1.05 16 18 N -0.43 -1.89 10.49 -194.82 -2.04 -3.94 16 19 C 0.00 0.00 11.21 84.64 0.95 0.95 16 20 C 0.10 -0.15 11.22 84.64 0.95 0.80 16 21 N -0.51 -1.73 8.83 -308.16 -2.72 -4.45 16 22 C -0.11 0.39 5.57 30.59 0.17 0.56 16 23 C -0.11 0.60 5.39 30.59 0.17 0.77 16 24 N -0.58 -2.40 9.21 -197.99 -1.82 -4.22 16 25 C 0.19 0.04 9.92 84.71 0.84 0.88 16 26 H 0.38 -1.83 8.70 -74.06 -0.64 -2.47 16 27 H 0.13 -0.74 7.96 -2.39 -0.02 -0.76 16 28 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 29 H -0.28 0.09 7.02 99.48 0.70 0.79 16 30 H 0.18 -0.38 8.06 -2.91 -0.02 -0.40 16 31 H 0.42 -0.79 8.72 -92.71 -0.81 -1.60 16 32 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.07 0.00 8.14 -2.39 -0.02 -0.01 16 34 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 37 H 0.20 -1.51 8.06 -2.91 -0.02 -1.53 16 38 H 0.20 -1.81 8.06 -2.91 -0.02 -1.83 16 39 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.08 -0.52 8.14 -2.38 -0.02 -0.54 16 42 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.18 -0.84 5.01 -2.91 -0.01 -0.85 16 Total: 0.00 -18.55 358.60 -3.09 -21.64 By element: Atomic # 1 Polarization: -10.11 SS G_CDS: -0.36 Total: -10.48 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 8.40 Total: 13.58 kcal Atomic # 7 Polarization: -9.43 SS G_CDS: -10.38 Total: -19.82 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -2.79 Total: -3.91 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.05 Total: -1.01 kcal Total: -18.55 -3.09 -21.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12806124_12175864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.056 kcal (2) G-P(sol) polarization free energy of solvation -18.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds