Wall clock time and date at job start Mon Mar 8 2021 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47280 * 2 1 4 4 C 1.50702 * 109.47378 * 239.99761 * 2 1 3 5 5 C 1.38834 * 120.33672 * 299.99883 * 4 2 1 6 6 C 1.38334 * 118.50821 * 179.97438 * 5 4 2 7 7 C 1.39100 * 119.09457 * 0.02562 * 6 5 4 8 8 N 1.39006 * 119.70108 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00579 * 359.97438 * 8 7 6 10 10 H 1.09007 * 109.46599 * 35.00759 * 9 8 7 11 11 C 1.52992 * 109.47431 * 155.00209 * 9 8 7 12 12 C 1.53004 * 109.47303 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46730 * 300.00162 * 12 11 9 14 14 H 1.08998 * 109.47298 * 299.99716 * 13 12 11 15 15 O 1.42907 * 109.46839 * 179.97438 * 13 12 11 16 16 C 1.35673 * 116.99719 * 149.99860 * 15 13 12 17 17 N 1.32505 * 120.07640 * 359.97438 * 16 15 13 18 18 C 1.32240 * 119.93577 * 179.97438 * 17 16 15 19 19 C 1.38188 * 120.08395 * 0.26404 * 18 17 16 20 20 N 1.32244 * 120.14250 * 359.47052 * 19 18 17 21 21 C 1.31965 * 120.07038 * 0.52332 * 20 19 18 22 22 C 1.52991 * 109.47179 * 60.00212 * 13 12 11 23 23 C 1.52998 * 109.47416 * 275.00866 * 9 8 7 24 24 N 1.32421 * 120.59207 * 0.25095 * 7 6 5 25 25 C 1.31941 * 121.62110 * 359.48376 * 24 7 6 26 26 H 0.96705 * 113.99297 * 60.00024 * 1 2 3 27 27 H 1.09004 * 109.47072 * 119.99765 * 2 1 3 28 28 H 1.48503 * 109.99788 * 59.99566 * 3 2 1 29 29 H 1.48495 * 110.00012 * 181.31308 * 3 2 1 30 30 H 1.08009 * 120.74486 * 359.96203 * 5 4 2 31 31 H 1.07999 * 120.45558 * 179.97438 * 6 5 4 32 32 H 0.97004 * 119.99696 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47043 * 60.00666 * 11 9 8 34 34 H 1.08998 * 109.47425 * 300.00620 * 11 9 8 35 35 H 1.09001 * 109.46936 * 180.02562 * 12 11 9 36 36 H 1.08998 * 109.46998 * 60.00061 * 12 11 9 37 37 H 1.08002 * 119.95568 * 179.97438 * 18 17 16 38 38 H 1.07993 * 119.92666 * 179.73995 * 19 18 17 39 39 H 1.07998 * 120.04771 * 179.75065 * 21 20 19 40 40 H 1.08998 * 109.47411 * 59.99573 * 22 13 12 41 41 H 1.09003 * 109.47249 * 180.02562 * 22 13 12 42 42 H 1.08998 * 109.47022 * 299.99312 * 23 9 8 43 43 H 1.09003 * 109.47336 * 59.99438 * 23 9 8 44 44 H 1.07997 * 119.57485 * 180.24353 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6003 -2.0396 -1.4570 6 6 2.0816 -2.6545 -2.5989 7 6 2.8769 -1.9245 -3.4762 8 7 3.3678 -2.5300 -4.6271 9 6 3.0474 -3.9310 -4.9115 10 1 2.0368 -4.1499 -4.5663 11 6 3.1362 -4.1787 -6.4187 12 6 2.8009 -5.6417 -6.7157 13 6 3.7954 -6.5502 -5.9900 14 1 4.8060 -6.3317 -6.3352 15 8 3.4820 -7.9167 -6.2670 16 6 4.5144 -8.7970 -6.2699 17 7 5.7465 -8.3763 -6.0237 18 6 6.7506 -9.2368 -6.0268 19 6 6.5171 -10.5728 -6.2918 20 7 5.2880 -10.9971 -6.5328 21 6 4.2816 -10.1435 -6.5311 22 6 3.7065 -6.3025 -4.4829 23 6 4.0421 -4.8392 -4.1859 24 7 3.1751 -0.6596 -3.2219 25 6 2.7260 -0.0463 -2.1435 26 1 -0.3932 0.4417 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5614 2.4679 1.2085 29 1 3.5346 1.7702 -0.0320 30 1 0.9811 -2.5814 -0.7573 31 1 1.8439 -3.6874 -2.8061 32 1 3.9231 -2.0251 -5.2417 33 1 4.1466 -3.9599 -6.7639 34 1 2.4275 -3.5317 -6.9356 35 1 2.8647 -5.8182 -7.7895 36 1 1.7904 -5.8602 -6.3705 37 1 7.7551 -8.8942 -5.8266 38 1 7.3396 -11.2726 -6.2978 39 1 3.2785 -10.4897 -6.7319 40 1 2.6960 -6.5210 -4.1377 41 1 4.4154 -6.9494 -3.9660 42 1 5.0526 -4.6203 -4.5311 43 1 3.9788 -4.6627 -3.1121 44 1 2.9865 0.9874 -1.9708 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12806124_13915762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:04 Heat of formation + Delta-G solvation = 27.277251 kcal Electronic energy + Delta-G solvation = -27191.415057 eV Core-core repulsion = 23303.911683 eV Total energy + Delta-G solvation = -3887.503374 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.33771 -41.52001 -40.44672 -38.82485 -37.74456 -35.59791 -35.08649 -33.45449 -32.18907 -31.99230 -31.39822 -29.40479 -26.41347 -25.75727 -25.15016 -24.83534 -23.76240 -23.28287 -22.21192 -21.13934 -19.57823 -18.91352 -18.59659 -18.43808 -17.75861 -17.66282 -16.97892 -16.55323 -16.51224 -16.08546 -15.86338 -15.77218 -15.55757 -15.29007 -15.17501 -14.71632 -14.38147 -14.24546 -14.19288 -14.02363 -13.74853 -13.48243 -13.35384 -13.18295 -12.80962 -12.67718 -12.38693 -12.29618 -12.23216 -12.14695 -12.01562 -11.63302 -11.37718 -11.02822 -10.75965 -10.42785 -10.37744 -10.27018 -9.74905 -8.70690 -4.99352 -0.19123 0.05592 0.21948 0.39428 1.34107 1.63347 1.73006 1.96933 2.09366 2.65379 2.82811 3.01221 3.34583 3.45701 3.49210 3.56238 3.59174 3.63658 3.78279 3.86650 3.94171 4.01814 4.07165 4.08829 4.14502 4.20980 4.26661 4.32747 4.36361 4.37116 4.51737 4.53302 4.62374 4.67473 4.74668 4.81389 4.96585 4.98609 5.02933 5.04767 5.09684 5.19124 5.26533 5.33552 5.53029 6.00895 6.02824 6.17098 6.54198 6.70000 6.79899 7.13837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.054 4.054 3 Si 0.767 3.233 4 C -0.237 4.237 5 C -0.012 4.012 6 C -0.243 4.243 7 C 0.398 3.602 8 N -0.715 5.715 9 C 0.156 3.844 10 H 0.091 0.909 11 C -0.113 4.113 12 C -0.107 4.107 13 C 0.087 3.913 14 H 0.083 0.917 15 O -0.300 6.300 16 C 0.264 3.736 17 N -0.513 5.513 18 C 0.095 3.905 19 C 0.002 3.998 20 N -0.429 5.429 21 C 0.028 3.972 22 C -0.124 4.124 23 C -0.122 4.122 24 N -0.564 5.564 25 C 0.146 3.854 26 H 0.394 0.606 27 H 0.106 0.894 28 H -0.297 1.297 29 H -0.287 1.287 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.407 0.593 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.204 0.796 38 H 0.201 0.799 39 H 0.187 0.813 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 0.043 -2.984 2.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.673 3.327 4 C -0.243 4.243 5 C -0.038 4.038 6 C -0.268 4.268 7 C 0.162 3.838 8 N -0.346 5.346 9 C 0.051 3.949 10 H 0.109 0.891 11 C -0.151 4.151 12 C -0.146 4.146 13 C 0.031 3.969 14 H 0.101 0.899 15 O -0.205 6.205 16 C 0.082 3.918 17 N -0.242 5.242 18 C -0.063 4.063 19 C -0.156 4.156 20 N -0.144 5.144 21 C -0.134 4.134 22 C -0.162 4.162 23 C -0.161 4.161 24 N -0.281 5.281 25 C -0.011 4.011 26 H 0.244 0.756 27 H 0.124 0.876 28 H -0.224 1.224 29 H -0.214 1.214 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.244 0.756 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.221 0.779 38 H 0.217 0.783 39 H 0.204 0.796 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.014 0.558 -2.699 2.937 hybrid contribution 0.178 -0.801 0.779 1.131 sum 1.192 -0.242 -1.920 2.273 Atomic orbital electron populations 1.86453 1.17369 1.82113 1.50482 1.24843 0.85084 1.10123 0.96481 0.93845 0.77872 0.75842 0.85109 1.21040 1.05939 0.96783 1.00497 1.21378 0.93891 0.93374 0.95167 1.21651 1.05276 1.02506 0.97329 1.18601 0.89341 0.88391 0.87466 1.44616 1.55904 1.11885 1.22171 1.21099 0.99112 0.78876 0.95797 0.89129 1.21666 1.03949 0.95655 0.93868 1.21534 0.99354 0.92535 1.01128 1.22588 1.01013 0.77474 0.95842 0.89916 1.86313 1.30231 1.19689 1.84298 1.21086 0.87115 0.90398 0.93182 1.68086 0.99761 1.39546 1.16852 1.24106 0.99211 0.90276 0.92756 1.24139 0.95412 0.96850 0.99248 1.68495 1.00676 1.36734 1.08509 1.23163 1.01089 0.87157 1.02025 1.21832 1.02816 0.96652 0.94937 1.21893 1.00054 0.93189 1.00957 1.67151 1.28036 1.09961 1.22973 1.22464 0.91548 0.99218 0.87844 0.75592 0.87645 1.22439 1.21403 0.83869 0.83579 0.75633 0.90402 0.89093 0.90014 0.89767 0.77893 0.78263 0.79582 0.90406 0.92497 0.91467 0.91568 0.81602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.04 12.78 -148.98 -1.90 -1.95 16 2 C -0.05 0.01 2.84 71.24 0.20 0.22 16 3 Si 0.77 -1.21 29.82 68.60 2.05 0.84 16 4 C -0.24 -0.28 5.40 -19.76 -0.11 -0.38 16 5 C -0.01 -0.01 9.76 22.44 0.22 0.20 16 6 C -0.24 -0.23 8.83 22.50 0.20 -0.03 16 7 C 0.40 1.12 7.63 133.05 1.02 2.14 16 8 N -0.71 1.08 5.25 -324.56 -1.70 -0.62 16 9 C 0.16 -0.75 2.14 44.99 0.10 -0.65 16 10 H 0.09 -0.48 6.45 -2.38 -0.02 -0.49 16 11 C -0.11 0.77 5.39 30.59 0.16 0.93 16 12 C -0.11 0.55 5.57 30.60 0.17 0.72 16 13 C 0.09 -0.11 2.39 30.59 0.07 -0.04 16 14 H 0.08 0.05 7.00 -2.39 -0.02 0.03 16 15 O -0.30 -0.73 9.77 -89.90 -0.88 -1.60 16 16 C 0.26 0.95 7.46 84.80 0.63 1.58 16 17 N -0.51 -1.40 8.83 -308.19 -2.72 -4.12 16 18 C 0.10 -0.19 11.22 84.62 0.95 0.76 16 19 C 0.00 0.00 11.21 84.62 0.95 0.95 16 20 N -0.43 -1.72 10.49 -194.82 -2.04 -3.77 16 21 C 0.03 0.09 11.18 84.88 0.95 1.04 16 22 C -0.12 0.24 5.54 30.61 0.17 0.41 16 23 C -0.12 0.38 5.42 30.61 0.17 0.54 16 24 N -0.56 -3.03 10.39 -193.26 -2.01 -5.04 16 25 C 0.15 0.35 9.84 84.64 0.83 1.18 16 26 H 0.39 -3.00 8.70 -74.05 -0.64 -3.65 16 27 H 0.11 0.08 7.96 -2.38 -0.02 0.06 16 28 H -0.30 -1.67 7.11 99.48 0.71 -0.97 16 29 H -0.29 -0.99 7.11 99.48 0.71 -0.29 16 30 H 0.14 -0.14 8.06 -2.91 -0.02 -0.17 16 31 H 0.15 -0.36 6.07 -2.91 -0.02 -0.38 16 32 H 0.41 -0.94 8.73 -92.71 -0.81 -1.74 16 33 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.20 -1.88 8.06 -2.91 -0.02 -1.90 16 38 H 0.20 -1.56 8.06 -2.91 -0.02 -1.58 16 39 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 40 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 44 H 0.17 -0.27 4.88 -2.91 -0.01 -0.29 16 Total: 0.00 -17.93 360.04 -2.90 -20.83 By element: Atomic # 1 Polarization: -13.77 SS G_CDS: -0.37 Total: -14.14 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.68 Total: 9.57 kcal Atomic # 7 Polarization: -5.07 SS G_CDS: -8.47 Total: -13.54 kcal Atomic # 8 Polarization: -0.77 SS G_CDS: -2.78 Total: -3.55 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.05 Total: 0.84 kcal Total: -17.93 -2.90 -20.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12806124_13915762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.103 kcal (2) G-P(sol) polarization free energy of solvation -17.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds