Wall clock time and date at job start Mon Mar 8 2021 06:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.46977 * 2 1 4 4 C 1.50694 * 109.47711 * 120.00057 * 2 1 3 5 5 C 1.33334 * 125.94973 * 64.99788 * 4 2 1 6 6 N 1.32112 * 114.57962 * 179.74118 * 5 4 2 7 7 C 1.29689 * 116.86762 * 359.97438 * 6 5 4 8 8 N 1.38612 * 124.94822 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00352 * 359.97438 * 8 7 6 10 10 H 1.09007 * 109.46896 * 324.99751 * 9 8 7 11 11 C 1.53001 * 109.46958 * 84.99465 * 9 8 7 12 12 C 1.53002 * 109.46916 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47228 * 300.00272 * 12 11 9 14 14 H 1.09000 * 109.46685 * 300.00014 * 13 12 11 15 15 O 1.42898 * 109.46943 * 179.97438 * 13 12 11 16 16 C 1.35683 * 116.99984 * 90.00037 * 15 13 12 17 17 C 1.39070 * 120.07366 * 179.72057 * 16 15 13 18 18 N 1.32002 * 119.91742 * 179.77932 * 17 16 15 19 19 C 1.32208 * 120.06710 * 0.47470 * 18 17 16 20 20 C 1.38237 * 120.14467 * 359.78105 * 19 18 17 21 21 N 1.32214 * 120.07593 * 359.97206 * 20 19 18 22 22 C 1.52991 * 109.47002 * 59.99991 * 13 12 11 23 23 C 1.53000 * 109.47383 * 204.99463 * 9 8 7 24 24 S 1.70962 * 110.10261 * 0.02562 * 7 6 5 25 25 H 0.96700 * 113.99795 * 299.99406 * 1 2 3 26 26 H 1.08997 * 109.47194 * 240.00519 * 2 1 3 27 27 H 1.48493 * 109.99888 * 178.68060 * 3 2 1 28 28 H 1.48496 * 109.99995 * 300.00264 * 3 2 1 29 29 H 1.07999 * 122.70779 * 359.74252 * 5 4 2 30 30 H 0.97009 * 119.99976 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47343 * 300.00036 * 11 9 8 32 32 H 1.09002 * 109.47369 * 60.00770 * 11 9 8 33 33 H 1.09001 * 109.47144 * 180.02562 * 12 11 9 34 34 H 1.09007 * 109.47039 * 60.00224 * 12 11 9 35 35 H 1.08004 * 120.03582 * 0.02562 * 17 16 15 36 36 H 1.07996 * 119.92727 * 179.75247 * 19 18 17 37 37 H 1.07997 * 119.95969 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46951 * 180.02562 * 22 13 12 39 39 H 1.08995 * 109.47667 * 60.00080 * 22 13 12 40 40 H 1.08995 * 109.47270 * 300.00422 * 23 9 8 41 41 H 1.09001 * 109.46395 * 60.00037 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7623 -2.0026 1.5121 6 7 2.3026 -2.3915 2.6532 7 6 2.9205 -1.4870 3.3475 8 7 3.5458 -1.7098 4.5643 9 6 3.5384 -3.0494 5.1574 10 1 2.5934 -3.5425 4.9293 11 6 4.6940 -3.8692 4.5798 12 6 4.6859 -5.2684 5.1988 13 6 4.8486 -5.1559 6.7160 14 1 5.7936 -4.6630 6.9444 15 8 4.8404 -6.4627 7.2940 16 6 6.0378 -7.0885 7.4190 17 6 6.1047 -8.3600 7.9785 18 7 7.2707 -8.9677 8.0946 19 6 8.3751 -8.3651 7.6883 20 6 8.3124 -7.0991 7.1367 21 7 7.1470 -6.4871 7.0132 22 6 3.6931 -4.3362 7.2934 23 6 3.7016 -2.9364 6.6745 24 16 2.8513 0.0200 2.5433 25 1 -0.3933 0.4416 0.7651 26 1 1.7923 -0.5137 -0.8900 27 1 3.5345 1.7704 0.0321 28 1 1.5614 2.4680 -1.2084 29 1 1.2270 -2.6768 0.8600 30 1 3.9884 -0.9786 5.0233 31 1 4.5777 -3.9497 3.4990 32 1 5.6389 -3.3761 4.8080 33 1 5.5093 -5.8523 4.7877 34 1 3.7408 -5.7613 4.9703 35 1 5.2031 -8.8511 8.3138 36 1 9.3283 -8.8628 7.7881 37 1 9.2165 -6.6094 6.8062 38 1 3.8093 -4.2557 8.3742 39 1 2.7482 -4.8290 7.0650 40 1 4.6465 -2.4433 6.9026 41 1 2.8783 -2.3523 7.0859 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12806124_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:09 Heat of formation + Delta-G solvation = 34.106263 kcal Electronic energy + Delta-G solvation = -25644.575866 eV Core-core repulsion = 21846.520867 eV Total energy + Delta-G solvation = -3798.054999 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32466 -40.97867 -40.29467 -38.74972 -37.75363 -35.60091 -35.05708 -32.10067 -32.04436 -31.34526 -29.73264 -26.61300 -25.90521 -25.17750 -24.51909 -23.91783 -23.11166 -21.41095 -20.67057 -19.76004 -19.47805 -18.75049 -18.16847 -17.78908 -17.23209 -16.89954 -16.72669 -16.36559 -16.05038 -15.82164 -15.73694 -15.45178 -15.35949 -14.89175 -14.82225 -14.37589 -14.27352 -13.99268 -13.79042 -13.43628 -13.31959 -12.93826 -12.78127 -12.69431 -12.35555 -12.32935 -12.31926 -12.07340 -12.01519 -11.69517 -11.39632 -11.03818 -10.79282 -10.26129 -10.21558 -10.15583 -9.74409 -8.75776 -5.14635 -0.19734 -0.02043 0.03065 0.08969 0.69472 1.25957 1.58498 1.73562 1.90893 2.04128 2.11382 2.66140 2.97363 3.28411 3.42763 3.44335 3.45408 3.52809 3.62952 3.85130 3.93399 3.97740 3.99595 4.04268 4.19690 4.21365 4.26810 4.30654 4.45536 4.47874 4.54049 4.61571 4.73817 4.78127 4.84187 4.93282 4.99692 5.03123 5.12471 5.14888 5.27670 5.81706 6.02542 6.03828 6.17199 6.52856 6.70818 7.01160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.657 3.343 4 C -0.307 4.307 5 C 0.120 3.880 6 N -0.549 5.549 7 C 0.328 3.672 8 N -0.690 5.690 9 C 0.158 3.842 10 H 0.095 0.905 11 C -0.124 4.124 12 C -0.130 4.130 13 C 0.088 3.912 14 H 0.091 0.909 15 O -0.291 6.291 16 C 0.278 3.722 17 C 0.041 3.959 18 N -0.403 5.403 19 C 0.003 3.997 20 C 0.096 3.904 21 N -0.498 5.498 22 C -0.112 4.112 23 C -0.123 4.123 24 S 0.085 5.915 25 H 0.380 0.620 26 H 0.121 0.879 27 H -0.242 1.242 28 H -0.236 1.236 29 H 0.175 0.825 30 H 0.414 0.586 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.177 0.823 36 H 0.174 0.826 37 H 0.174 0.826 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 3.288 3.069 4.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.124 4.124 3 Si 0.557 3.443 4 C -0.430 4.430 5 C -0.031 4.031 6 N -0.275 5.275 7 C -0.042 4.042 8 N -0.328 5.328 9 C 0.051 3.949 10 H 0.113 0.887 11 C -0.163 4.163 12 C -0.168 4.168 13 C 0.031 3.969 14 H 0.109 0.891 15 O -0.197 6.197 16 C 0.096 3.904 17 C -0.123 4.123 18 N -0.118 5.118 19 C -0.155 4.155 20 C -0.063 4.063 21 N -0.228 5.228 22 C -0.150 4.150 23 C -0.161 4.161 24 S 0.334 5.666 25 H 0.227 0.773 26 H 0.139 0.861 27 H -0.166 1.166 28 H -0.159 1.159 29 H 0.192 0.808 30 H 0.251 0.749 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.194 0.806 36 H 0.191 0.809 37 H 0.191 0.809 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.137 3.820 2.632 5.107 hybrid contribution 0.089 -0.776 -0.611 0.992 sum 2.225 3.044 2.021 4.278 Atomic orbital electron populations 1.86514 1.16944 1.81692 1.49108 1.24109 0.84814 1.08890 0.94632 0.94991 0.81971 0.77983 0.89348 1.25565 1.15077 0.98319 1.04029 1.21331 0.96551 0.93101 0.92157 1.66482 1.18646 1.33571 1.08755 1.23732 0.95238 0.93157 0.92093 1.44130 1.58877 1.11975 1.17858 1.21107 1.00251 0.81838 0.91657 0.88717 1.21871 0.98610 0.94522 1.01276 1.21895 1.03388 0.97617 0.93940 1.22523 1.00807 0.80677 0.92877 0.89079 1.86334 1.24553 1.32278 1.76501 1.20976 0.85857 0.91272 0.92326 1.22964 0.97824 0.91012 1.00493 1.68488 0.98091 1.33531 1.11655 1.23638 0.98296 0.94550 0.99051 1.23567 0.95336 0.93158 0.94243 1.68051 0.98913 1.36393 1.19395 1.21543 0.98538 0.94029 1.00903 1.21772 1.03480 0.97037 0.93818 1.83943 1.55403 1.11543 1.15724 0.77291 0.86140 1.16617 1.15941 0.80788 0.74913 0.90627 0.91480 0.91120 0.90672 0.80632 0.80918 0.80926 0.90217 0.90138 0.90836 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.15 12.88 -35.23 -0.45 -0.60 16 2 C -0.01 0.00 2.99 36.00 0.11 0.11 16 3 Si 0.66 -0.43 31.07 -169.99 -5.28 -5.71 16 4 C -0.31 -0.20 5.73 -36.02 -0.21 -0.41 16 5 C 0.12 0.22 11.24 -19.14 -0.22 0.00 16 6 N -0.55 -1.45 9.90 -15.21 -0.15 -1.60 16 7 C 0.33 0.28 8.06 -87.68 -0.71 -0.42 16 8 N -0.69 0.92 5.23 -55.78 -0.29 0.63 16 9 C 0.16 -0.21 2.58 -67.93 -0.18 -0.39 16 10 H 0.09 0.04 7.77 -51.93 -0.40 -0.36 16 11 C -0.12 0.07 5.51 -26.73 -0.15 -0.08 16 12 C -0.13 0.01 5.54 -26.73 -0.15 -0.14 16 13 C 0.09 -0.02 2.39 -26.73 -0.06 -0.09 16 14 H 0.09 0.02 7.00 -51.93 -0.36 -0.34 16 15 O -0.29 -0.41 9.77 -18.75 -0.18 -0.59 16 16 C 0.28 0.50 7.46 -16.94 -0.13 0.37 16 17 C 0.04 0.06 11.18 -17.17 -0.19 -0.13 16 18 N -0.40 -0.84 10.49 -12.93 -0.14 -0.98 16 19 C 0.00 0.00 11.21 -17.39 -0.20 -0.20 16 20 C 0.10 -0.05 11.22 -17.39 -0.20 -0.25 16 21 N -0.50 -0.74 8.83 -13.13 -0.12 -0.85 16 22 C -0.11 0.21 5.57 -26.71 -0.15 0.06 16 23 C -0.12 0.36 5.39 -26.71 -0.14 0.22 16 24 S 0.08 -0.02 20.59 -107.50 -2.21 -2.24 16 25 H 0.38 -1.26 8.70 45.56 0.40 -0.87 16 26 H 0.12 0.00 7.96 -51.93 -0.41 -0.41 16 27 H -0.24 -0.39 7.11 56.52 0.40 0.01 16 28 H -0.24 -0.46 7.11 56.52 0.40 -0.06 16 29 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 30 H 0.41 -1.45 8.73 -40.82 -0.36 -1.80 16 31 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 34 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.18 -0.11 8.06 -52.48 -0.42 -0.53 16 36 H 0.17 -0.53 8.06 -52.49 -0.42 -0.96 16 37 H 0.17 -0.65 8.06 -52.49 -0.42 -1.07 16 38 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 39 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 40 H 0.07 -0.27 8.14 -51.93 -0.42 -0.69 16 41 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 LS Contribution 356.56 15.07 5.37 5.37 Total: 0.00 -7.21 356.56 -11.42 -18.63 By element: Atomic # 1 Polarization: -5.31 SS G_CDS: -5.41 Total: -10.72 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.56 Total: -1.34 kcal Atomic # 7 Polarization: -2.10 SS G_CDS: -0.69 Total: -2.80 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -0.64 Total: -1.19 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.28 Total: -5.71 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.21 Total: -2.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -7.21 -11.42 -18.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12806124_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.731 kcal (2) G-P(sol) polarization free energy of solvation -7.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds