Wall clock time and date at job start Mon Mar 8 2021 06:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.46977 * 2 1 4 4 C 1.50694 * 109.47711 * 120.00057 * 2 1 3 5 5 C 1.33334 * 125.94973 * 64.99788 * 4 2 1 6 6 N 1.32112 * 114.57962 * 179.74118 * 5 4 2 7 7 C 1.29689 * 116.86762 * 359.97438 * 6 5 4 8 8 N 1.38612 * 124.94822 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00352 * 359.97438 * 8 7 6 10 10 H 1.09007 * 109.46896 * 324.99751 * 9 8 7 11 11 C 1.53001 * 109.46958 * 84.99465 * 9 8 7 12 12 C 1.53002 * 109.46916 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47228 * 300.00272 * 12 11 9 14 14 H 1.09000 * 109.46685 * 300.00014 * 13 12 11 15 15 O 1.42898 * 109.46943 * 179.97438 * 13 12 11 16 16 C 1.35683 * 116.99984 * 90.00037 * 15 13 12 17 17 C 1.39070 * 120.07366 * 179.72057 * 16 15 13 18 18 N 1.32002 * 119.91742 * 179.77932 * 17 16 15 19 19 C 1.32208 * 120.06710 * 0.47470 * 18 17 16 20 20 C 1.38237 * 120.14467 * 359.78105 * 19 18 17 21 21 N 1.32214 * 120.07593 * 359.97206 * 20 19 18 22 22 C 1.52991 * 109.47002 * 59.99991 * 13 12 11 23 23 C 1.53000 * 109.47383 * 204.99463 * 9 8 7 24 24 S 1.70962 * 110.10261 * 0.02562 * 7 6 5 25 25 H 0.96700 * 113.99795 * 299.99406 * 1 2 3 26 26 H 1.08997 * 109.47194 * 240.00519 * 2 1 3 27 27 H 1.48493 * 109.99888 * 178.68060 * 3 2 1 28 28 H 1.48496 * 109.99995 * 300.00264 * 3 2 1 29 29 H 1.07999 * 122.70779 * 359.74252 * 5 4 2 30 30 H 0.97009 * 119.99976 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47343 * 300.00036 * 11 9 8 32 32 H 1.09002 * 109.47369 * 60.00770 * 11 9 8 33 33 H 1.09001 * 109.47144 * 180.02562 * 12 11 9 34 34 H 1.09007 * 109.47039 * 60.00224 * 12 11 9 35 35 H 1.08004 * 120.03582 * 0.02562 * 17 16 15 36 36 H 1.07996 * 119.92727 * 179.75247 * 19 18 17 37 37 H 1.07997 * 119.95969 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46951 * 180.02562 * 22 13 12 39 39 H 1.08995 * 109.47667 * 60.00080 * 22 13 12 40 40 H 1.08995 * 109.47270 * 300.00422 * 23 9 8 41 41 H 1.09001 * 109.46395 * 60.00037 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7623 -2.0026 1.5121 6 7 2.3026 -2.3915 2.6532 7 6 2.9205 -1.4870 3.3475 8 7 3.5458 -1.7098 4.5643 9 6 3.5384 -3.0494 5.1574 10 1 2.5934 -3.5425 4.9293 11 6 4.6940 -3.8692 4.5798 12 6 4.6859 -5.2684 5.1988 13 6 4.8486 -5.1559 6.7160 14 1 5.7936 -4.6630 6.9444 15 8 4.8404 -6.4627 7.2940 16 6 6.0378 -7.0885 7.4190 17 6 6.1047 -8.3600 7.9785 18 7 7.2707 -8.9677 8.0946 19 6 8.3751 -8.3651 7.6883 20 6 8.3124 -7.0991 7.1367 21 7 7.1470 -6.4871 7.0132 22 6 3.6931 -4.3362 7.2934 23 6 3.7016 -2.9364 6.6745 24 16 2.8513 0.0200 2.5433 25 1 -0.3933 0.4416 0.7651 26 1 1.7923 -0.5137 -0.8900 27 1 3.5345 1.7704 0.0321 28 1 1.5614 2.4680 -1.2084 29 1 1.2270 -2.6768 0.8600 30 1 3.9884 -0.9786 5.0233 31 1 4.5777 -3.9497 3.4990 32 1 5.6389 -3.3761 4.8080 33 1 5.5093 -5.8523 4.7877 34 1 3.7408 -5.7613 4.9703 35 1 5.2031 -8.8511 8.3138 36 1 9.3283 -8.8628 7.7881 37 1 9.2165 -6.6094 6.8062 38 1 3.8093 -4.2557 8.3742 39 1 2.7482 -4.8290 7.0650 40 1 4.6465 -2.4433 6.9026 41 1 2.8783 -2.3523 7.0859 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12806124_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:08 Heat of formation + Delta-G solvation = 34.287496 kcal Electronic energy + Delta-G solvation = -25644.568007 eV Core-core repulsion = 21846.520867 eV Total energy + Delta-G solvation = -3798.047140 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33342 -40.98704 -40.31082 -38.73981 -37.75486 -35.57855 -35.08284 -32.09443 -31.98194 -31.35956 -29.71057 -26.63713 -25.91896 -25.17854 -24.54195 -23.84482 -23.09576 -21.37421 -20.69322 -19.75965 -19.47947 -18.76034 -18.17856 -17.75387 -17.20574 -16.92790 -16.72866 -16.36411 -16.01922 -15.81791 -15.70339 -15.44046 -15.32932 -14.94368 -14.83218 -14.36183 -14.23581 -14.04682 -13.75803 -13.37907 -13.24901 -12.94239 -12.79001 -12.70575 -12.44612 -12.35915 -12.24373 -12.06681 -12.01893 -11.66243 -11.37117 -11.01625 -10.82775 -10.27729 -10.24690 -10.17331 -9.74905 -8.75291 -5.12734 -0.18998 -0.05913 0.01973 0.05703 0.66180 1.26058 1.57408 1.74638 1.88387 1.96845 2.18184 2.65485 3.00994 3.34748 3.45733 3.50287 3.52875 3.59031 3.63881 3.89734 3.93368 4.01581 4.09575 4.14210 4.21656 4.27861 4.34631 4.36373 4.47267 4.52318 4.58013 4.70080 4.72000 4.82675 4.95990 4.99198 5.01927 5.05063 5.14779 5.20098 5.30622 5.82228 6.02443 6.16795 6.17271 6.70051 6.72444 7.01655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.014 4.014 3 Si 0.734 3.266 4 C -0.310 4.310 5 C 0.103 3.897 6 N -0.577 5.577 7 C 0.317 3.683 8 N -0.680 5.680 9 C 0.164 3.836 10 H 0.076 0.924 11 C -0.114 4.114 12 C -0.123 4.123 13 C 0.089 3.911 14 H 0.089 0.911 15 O -0.301 6.301 16 C 0.263 3.737 17 C 0.026 3.974 18 N -0.429 5.429 19 C 0.002 3.998 20 C 0.096 3.904 21 N -0.512 5.512 22 C -0.108 4.108 23 C -0.113 4.113 24 S 0.118 5.882 25 H 0.395 0.605 26 H 0.118 0.882 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.175 0.825 30 H 0.426 0.574 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.186 0.814 36 H 0.201 0.799 37 H 0.206 0.794 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 4.372 3.919 6.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.128 4.128 3 Si 0.637 3.363 4 C -0.433 4.433 5 C -0.048 4.048 6 N -0.304 5.304 7 C -0.054 4.054 8 N -0.320 5.320 9 C 0.057 3.943 10 H 0.094 0.906 11 C -0.153 4.153 12 C -0.161 4.161 13 C 0.033 3.967 14 H 0.107 0.893 15 O -0.207 6.207 16 C 0.082 3.918 17 C -0.136 4.136 18 N -0.144 5.144 19 C -0.156 4.156 20 C -0.063 4.063 21 N -0.241 5.241 22 C -0.146 4.146 23 C -0.151 4.151 24 S 0.367 5.633 25 H 0.245 0.755 26 H 0.135 0.865 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.192 0.808 30 H 0.265 0.735 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.203 0.797 36 H 0.218 0.782 37 H 0.223 0.777 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.864 4.906 3.518 6.682 hybrid contribution -0.076 -1.130 -0.923 1.461 sum 2.789 3.776 2.595 5.364 Atomic orbital electron populations 1.86480 1.17010 1.82135 1.50262 1.24236 0.84890 1.09387 0.94270 0.94108 0.79046 0.75740 0.87394 1.25697 1.14871 0.98198 1.04497 1.21424 0.97253 0.93760 0.92386 1.66473 1.19713 1.34765 1.09430 1.23955 0.95185 0.93629 0.92590 1.44142 1.58345 1.12338 1.17177 1.21001 0.98881 0.81651 0.92806 0.90551 1.21760 0.99306 0.94413 0.99869 1.21797 1.02222 0.97646 0.94457 1.22576 1.01356 0.80323 0.92411 0.89341 1.86318 1.24734 1.32934 1.76715 1.21080 0.86123 0.91611 0.93012 1.23138 0.98276 0.91198 1.00956 1.68495 0.98840 1.34406 1.12651 1.24163 0.98731 0.94775 0.97972 1.24138 0.95727 0.93135 0.93261 1.68083 0.99459 1.36936 1.19670 1.21542 0.97563 0.94274 1.01262 1.21717 1.04743 0.96540 0.92097 1.83749 1.54679 1.10192 1.14636 0.75512 0.86521 1.19585 1.19784 0.80809 0.73483 0.92739 0.90816 0.92605 0.91571 0.79708 0.78186 0.77730 0.89534 0.90556 0.89406 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.30 12.88 -148.98 -1.92 -2.22 16 2 C -0.01 0.00 2.99 71.23 0.21 0.21 16 3 Si 0.73 -1.03 31.07 68.60 2.13 1.11 16 4 C -0.31 -0.50 5.73 24.57 0.14 -0.36 16 5 C 0.10 0.48 11.24 83.54 0.94 1.42 16 6 N -0.58 -3.63 9.90 -202.03 -2.00 -5.63 16 7 C 0.32 0.60 8.06 179.32 1.45 2.04 16 8 N -0.68 2.05 5.23 -330.39 -1.73 0.32 16 9 C 0.16 -0.40 2.58 44.99 0.12 -0.28 16 10 H 0.08 0.14 7.77 -2.38 -0.02 0.13 16 11 C -0.11 0.03 5.51 30.60 0.17 0.19 16 12 C -0.12 -0.16 5.54 30.60 0.17 0.01 16 13 C 0.09 0.01 2.39 30.59 0.07 0.09 16 14 H 0.09 0.06 7.00 -2.39 -0.02 0.05 16 15 O -0.30 -1.19 9.77 -90.01 -0.88 -2.07 16 16 C 0.26 1.20 7.46 84.79 0.63 1.84 16 17 C 0.03 0.11 11.18 84.87 0.95 1.05 16 18 N -0.43 -1.98 10.49 -194.81 -2.04 -4.02 16 19 C 0.00 0.00 11.21 84.64 0.95 0.95 16 20 C 0.10 -0.17 11.22 84.64 0.95 0.78 16 21 N -0.51 -1.65 8.83 -308.16 -2.72 -4.37 16 22 C -0.11 0.41 5.57 30.61 0.17 0.58 16 23 C -0.11 0.76 5.39 30.61 0.17 0.93 16 24 S 0.12 -0.12 20.59 -56.49 -1.16 -1.28 16 25 H 0.39 -2.80 8.70 -74.06 -0.64 -3.44 16 26 H 0.12 0.07 7.96 -2.39 -0.02 0.05 16 27 H -0.27 -0.87 7.11 99.48 0.71 -0.17 16 28 H -0.27 -1.25 7.11 99.48 0.71 -0.54 16 29 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 30 H 0.43 -3.48 8.73 -92.70 -0.81 -4.29 16 31 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 35 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 36 H 0.20 -1.53 8.06 -2.91 -0.02 -1.55 16 37 H 0.21 -1.90 8.06 -2.91 -0.02 -1.93 16 38 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 Total: 0.00 -18.01 356.56 -3.59 -21.59 By element: Atomic # 1 Polarization: -12.54 SS G_CDS: -0.34 Total: -12.88 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 7.08 Total: 9.46 kcal Atomic # 7 Polarization: -5.21 SS G_CDS: -8.49 Total: -13.70 kcal Atomic # 8 Polarization: -1.49 SS G_CDS: -2.80 Total: -4.29 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.13 Total: 1.11 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.16 Total: -1.28 kcal Total: -18.01 -3.59 -21.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12806124_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.882 kcal (2) G-P(sol) polarization free energy of solvation -18.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds