Wall clock time and date at job start Mon Mar 8 2021 06:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33331 * 125.95463 * 2 1 4 4 C 1.50696 * 122.70478 * 359.97438 * 3 2 1 5 5 O 1.42903 * 109.47184 * 113.56481 * 4 3 2 6 6 Si 1.86300 * 109.47225 * 233.56213 * 4 3 2 7 7 N 1.32116 * 114.58325 * 180.02562 * 3 2 1 8 8 C 1.29689 * 116.86711 * 359.97438 * 7 3 2 9 9 N 1.38605 * 124.95039 * 179.97438 * 8 7 3 10 10 C 1.46500 * 120.00064 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47187 * 324.99957 * 10 9 8 12 12 C 1.53006 * 109.47271 * 85.00219 * 10 9 8 13 13 C 1.52993 * 109.47243 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47180 * 299.99879 * 13 12 10 15 15 H 1.09003 * 109.47351 * 300.00038 * 14 13 12 16 16 O 1.42901 * 109.47487 * 180.02562 * 14 13 12 17 17 C 1.35677 * 117.00135 * 89.99847 * 16 14 13 18 18 N 1.32512 * 120.07174 * 359.97438 * 17 16 14 19 19 C 1.32236 * 119.93059 * 180.02562 * 18 17 16 20 20 C 1.38186 * 120.08899 * 0.02562 * 19 18 17 21 21 N 1.32243 * 120.14628 * 359.97438 * 20 19 18 22 22 C 1.31973 * 120.06076 * 359.71623 * 21 20 19 23 23 C 1.52999 * 109.47384 * 60.00092 * 14 13 12 24 24 C 1.52998 * 109.47260 * 205.00164 * 10 9 8 25 25 S 1.70967 * 110.10001 * 0.24820 * 8 7 3 26 26 H 1.08997 * 109.47038 * 84.87091 * 1 2 3 27 27 H 1.09007 * 109.46817 * 204.86757 * 1 2 3 28 28 H 1.08997 * 109.47125 * 324.86846 * 1 2 3 29 29 H 1.09000 * 109.47657 * 353.56595 * 4 3 2 30 30 H 0.96697 * 113.99566 * 59.99906 * 5 4 3 31 31 H 1.48506 * 109.99596 * 58.68613 * 6 4 3 32 32 H 1.48499 * 110.00236 * 179.97438 * 6 4 3 33 33 H 0.96996 * 119.99981 * 0.02562 * 9 8 7 34 34 H 1.09003 * 109.46666 * 300.00229 * 12 10 9 35 35 H 1.08999 * 109.46748 * 59.99552 * 12 10 9 36 36 H 1.09000 * 109.47295 * 59.99690 * 13 12 10 37 37 H 1.09007 * 109.46785 * 180.02562 * 13 12 10 38 38 H 1.08005 * 119.95487 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.92997 * 180.02562 * 20 19 18 40 40 H 1.08005 * 120.03827 * 180.29103 * 22 21 20 41 41 H 1.08994 * 109.47638 * 180.02562 * 23 14 13 42 42 H 1.09003 * 109.46921 * 59.99683 * 23 14 13 43 43 H 1.08995 * 109.47315 * 59.99969 * 24 10 9 44 44 H 1.09003 * 109.47351 * 299.99954 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4829 -0.0006 5 8 2.0693 3.1230 1.2343 6 14 2.4876 3.4406 -1.4136 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2384 -0.8926 -0.0015 10 6 5.5065 -2.3328 -0.0019 11 1 4.7459 -2.8442 0.5881 12 6 5.4753 -2.8571 -1.4390 13 6 5.7547 -4.3613 -1.4393 14 6 7.1335 -4.6241 -0.8305 15 1 7.8945 -4.1131 -1.4203 16 8 7.3948 -6.0290 -0.8313 17 6 8.0091 -6.5407 -1.9275 18 7 8.3386 -5.7461 -2.9355 19 6 8.9368 -6.2479 -4.0028 20 6 9.2182 -7.5992 -4.0682 21 7 8.8908 -8.3951 -3.0641 22 6 8.2991 -7.8996 -1.9936 23 6 7.1648 -4.0999 0.6066 24 6 6.8856 -2.5951 0.6067 25 16 2.5413 -1.4261 -0.0066 26 1 -0.3633 0.0919 -1.0235 27 1 -0.3633 -0.9325 0.4322 28 1 -0.3633 0.8404 0.5914 29 1 0.6580 2.4498 -0.1161 30 1 3.0191 3.1877 1.4036 31 1 2.1805 2.7677 -2.7014 32 1 1.9544 4.8265 -1.4256 33 1 5.9755 -0.2621 -0.0019 34 1 4.4928 -2.6702 -1.8725 35 1 6.2359 -2.3457 -2.0288 36 1 4.9937 -4.8723 -0.8495 37 1 5.7329 -4.7346 -2.4632 38 1 9.2059 -5.6006 -4.8244 39 1 9.7072 -8.0062 -4.9409 40 1 8.0361 -8.5492 -1.1717 41 1 8.1472 -4.2867 1.0402 42 1 6.4038 -4.6109 1.1964 43 1 6.9079 -2.2216 1.6305 44 1 7.6463 -2.0837 0.0168 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12806124_15704122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:13 Heat of formation + Delta-G solvation = 27.950798 kcal Electronic energy + Delta-G solvation = -27786.656724 eV Core-core repulsion = 23832.797185 eV Total energy + Delta-G solvation = -3953.859539 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37231 -41.09843 -40.59050 -38.95446 -37.41230 -35.76967 -35.10323 -33.23479 -32.17991 -31.89563 -30.01118 -28.59400 -26.06191 -25.65618 -25.14125 -24.60929 -23.88986 -23.10665 -21.59138 -20.35708 -19.61348 -19.12532 -18.82118 -17.85834 -17.82702 -17.43884 -17.11928 -16.93476 -16.37873 -16.08010 -15.85215 -15.59701 -15.46720 -15.26450 -15.05100 -14.54323 -14.41430 -14.10853 -14.06679 -14.01663 -13.82103 -13.56916 -13.54524 -13.36253 -12.96317 -12.83821 -12.70164 -12.46075 -12.41670 -12.29001 -12.17143 -11.77348 -11.71697 -11.49326 -10.98344 -10.62214 -10.37531 -10.29783 -9.97963 -9.79249 -8.64947 -4.82317 -0.23522 0.01235 0.04959 0.17645 0.77841 1.35410 1.63329 1.75806 1.88079 1.93410 2.09826 2.62229 2.92862 3.24798 3.26818 3.35043 3.42761 3.46035 3.68424 3.69623 3.81387 3.82948 3.98478 4.03125 4.06025 4.09067 4.16132 4.19450 4.19818 4.39780 4.43604 4.45553 4.48253 4.60893 4.61976 4.75893 4.82931 4.84116 4.87786 4.92154 4.94267 5.01263 5.14144 5.20831 5.55774 5.97242 6.13137 6.26339 6.62707 6.66912 6.92986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.249 4.249 3 C 0.074 3.926 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.709 3.291 7 N -0.541 5.541 8 C 0.322 3.678 9 N -0.689 5.689 10 C 0.149 3.851 11 H 0.085 0.915 12 C -0.132 4.132 13 C -0.131 4.131 14 C 0.087 3.913 15 H 0.093 0.907 16 O -0.291 6.291 17 C 0.277 3.723 18 N -0.498 5.498 19 C 0.096 3.904 20 C 0.003 3.997 21 N -0.403 5.403 22 C 0.041 3.959 23 C -0.113 4.113 24 C -0.119 4.119 25 S 0.102 5.898 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.382 0.618 31 H -0.261 1.261 32 H -0.252 1.252 33 H 0.413 0.587 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.174 0.826 39 H 0.174 0.826 40 H 0.177 0.823 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -1.592 -0.919 3.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.372 4.372 3 C -0.056 4.056 4 C -0.146 4.146 5 O -0.342 6.342 6 Si 0.610 3.390 7 N -0.267 5.267 8 C -0.050 4.050 9 N -0.329 5.329 10 C 0.044 3.956 11 H 0.103 0.897 12 C -0.171 4.171 13 C -0.170 4.170 14 C 0.030 3.970 15 H 0.111 0.889 16 O -0.196 6.196 17 C 0.095 3.905 18 N -0.227 5.227 19 C -0.063 4.063 20 C -0.154 4.154 21 N -0.118 5.118 22 C -0.122 4.122 23 C -0.152 4.152 24 C -0.157 4.157 25 S 0.351 5.649 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.136 0.864 30 H 0.230 0.770 31 H -0.186 1.186 32 H -0.177 1.177 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.191 0.809 39 H 0.191 0.809 40 H 0.194 0.806 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.419 -2.083 -1.358 3.469 hybrid contribution -0.321 0.738 0.033 0.806 sum 2.098 -1.345 -1.325 2.822 Atomic orbital electron populations 1.20191 0.87010 1.03340 1.02661 1.25113 1.01109 0.93321 1.17643 1.20067 0.86959 0.97109 1.01482 1.24727 1.02943 0.89812 0.97115 1.86468 1.29923 1.79525 1.38252 0.93812 0.91336 0.78563 0.75303 1.65962 1.16979 1.16556 1.27208 1.23264 0.91780 0.91533 0.98409 1.43983 1.01781 1.06830 1.80349 1.21224 0.98501 0.79050 0.96826 0.89714 1.21999 1.03429 0.95134 0.96566 1.21910 0.96697 0.96103 1.02284 1.22511 0.98009 0.78482 0.97952 0.88903 1.86332 1.71886 1.26630 1.34791 1.20977 0.91021 0.91410 0.87121 1.68047 1.14355 1.38545 1.01785 1.23562 0.92718 0.95039 0.94966 1.23642 1.01109 0.91844 0.98852 1.68498 1.06263 1.37557 0.99436 1.22974 0.99645 0.91234 0.98359 1.21568 1.04071 0.94592 0.94922 1.21719 0.95484 0.95972 1.02569 1.83973 0.96587 1.10264 1.74041 0.90925 0.91166 0.90237 0.86427 0.76970 1.18579 1.17661 0.74825 0.90743 0.90511 0.90656 0.90741 0.80884 0.80895 0.80632 0.89957 0.90130 0.89656 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.01 9.71 36.00 0.35 0.34 16 2 C -0.25 -0.52 6.57 -36.02 -0.24 -0.76 16 3 C 0.07 0.19 5.19 -84.19 -0.44 -0.25 16 4 C -0.03 -0.06 2.84 36.00 0.10 0.05 16 5 O -0.54 -1.22 12.88 -35.23 -0.45 -1.67 16 6 Si 0.71 0.83 32.62 -169.99 -5.54 -4.72 16 7 N -0.54 -1.25 9.77 -11.36 -0.11 -1.36 16 8 C 0.32 0.37 8.22 -87.68 -0.72 -0.35 16 9 N -0.69 0.99 5.23 -55.78 -0.29 0.70 16 10 C 0.15 -0.39 2.40 -67.93 -0.16 -0.56 16 11 H 0.08 -0.18 7.26 -51.93 -0.38 -0.56 16 12 C -0.13 0.28 5.51 -26.73 -0.15 0.14 16 13 C -0.13 0.21 5.54 -26.74 -0.15 0.06 16 14 C 0.09 -0.12 2.39 -26.73 -0.06 -0.18 16 15 H 0.09 -0.07 7.00 -51.93 -0.36 -0.43 16 16 O -0.29 -0.12 9.77 -18.73 -0.18 -0.31 16 17 C 0.28 0.28 7.46 -16.94 -0.13 0.15 16 18 N -0.50 -0.37 8.83 -13.13 -0.12 -0.48 16 19 C 0.10 -0.11 11.22 -17.40 -0.20 -0.30 16 20 C 0.00 0.00 11.21 -17.39 -0.20 -0.20 16 21 N -0.40 -0.62 10.49 -12.93 -0.14 -0.76 16 22 C 0.04 0.03 11.18 -17.17 -0.19 -0.16 16 23 C -0.11 0.33 5.58 -26.70 -0.15 0.18 16 24 C -0.12 0.45 5.39 -26.70 -0.14 0.31 16 25 S 0.10 0.09 21.67 -107.50 -2.33 -2.24 16 26 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 28 H 0.08 -0.01 7.17 -51.93 -0.37 -0.39 16 29 H 0.12 0.13 6.33 -51.93 -0.33 -0.20 16 30 H 0.38 -0.21 8.70 45.56 0.40 0.19 16 31 H -0.26 -0.99 7.11 56.52 0.40 -0.59 16 32 H -0.25 -0.83 7.11 56.52 0.40 -0.43 16 33 H 0.41 -1.02 8.73 -40.82 -0.36 -1.38 16 34 H 0.07 -0.09 8.02 -51.93 -0.42 -0.50 16 35 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 36 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 37 H 0.07 -0.02 8.14 -51.92 -0.42 -0.45 16 38 H 0.17 -0.74 8.06 -52.48 -0.42 -1.16 16 39 H 0.17 -0.61 8.06 -52.49 -0.42 -1.03 16 40 H 0.18 -0.22 8.06 -52.48 -0.42 -0.64 16 41 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 42 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 43 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 44 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 LS Contribution 376.53 15.07 5.67 5.67 Total: 0.00 -7.11 376.53 -12.05 -19.15 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: -6.09 Total: -12.47 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.47 Total: -1.53 kcal Atomic # 7 Polarization: -1.25 SS G_CDS: -0.65 Total: -1.90 kcal Atomic # 8 Polarization: -1.34 SS G_CDS: -0.64 Total: -1.98 kcal Atomic # 14 Polarization: 0.83 SS G_CDS: -5.54 Total: -4.72 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.33 Total: -2.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -7.11 -12.05 -19.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12806124_15704122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.105 kcal (2) G-P(sol) polarization free energy of solvation -7.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds