Wall clock time and date at job start Mon Mar 8 2021 06:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33331 * 125.95463 * 2 1 4 4 C 1.50696 * 122.70478 * 359.97438 * 3 2 1 5 5 O 1.42903 * 109.47184 * 113.56481 * 4 3 2 6 6 Si 1.86300 * 109.47225 * 233.56213 * 4 3 2 7 7 N 1.32116 * 114.58325 * 180.02562 * 3 2 1 8 8 C 1.29689 * 116.86711 * 359.97438 * 7 3 2 9 9 N 1.38605 * 124.95039 * 179.97438 * 8 7 3 10 10 C 1.46500 * 120.00064 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47187 * 324.99957 * 10 9 8 12 12 C 1.53006 * 109.47271 * 85.00219 * 10 9 8 13 13 C 1.52993 * 109.47243 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47180 * 299.99879 * 13 12 10 15 15 H 1.09003 * 109.47351 * 300.00038 * 14 13 12 16 16 O 1.42901 * 109.47487 * 180.02562 * 14 13 12 17 17 C 1.35677 * 117.00135 * 89.99847 * 16 14 13 18 18 N 1.32512 * 120.07174 * 359.97438 * 17 16 14 19 19 C 1.32236 * 119.93059 * 180.02562 * 18 17 16 20 20 C 1.38186 * 120.08899 * 0.02562 * 19 18 17 21 21 N 1.32243 * 120.14628 * 359.97438 * 20 19 18 22 22 C 1.31973 * 120.06076 * 359.71623 * 21 20 19 23 23 C 1.52999 * 109.47384 * 60.00092 * 14 13 12 24 24 C 1.52998 * 109.47260 * 205.00164 * 10 9 8 25 25 S 1.70967 * 110.10001 * 0.24820 * 8 7 3 26 26 H 1.08997 * 109.47038 * 84.87091 * 1 2 3 27 27 H 1.09007 * 109.46817 * 204.86757 * 1 2 3 28 28 H 1.08997 * 109.47125 * 324.86846 * 1 2 3 29 29 H 1.09000 * 109.47657 * 353.56595 * 4 3 2 30 30 H 0.96697 * 113.99566 * 59.99906 * 5 4 3 31 31 H 1.48506 * 109.99596 * 58.68613 * 6 4 3 32 32 H 1.48499 * 110.00236 * 179.97438 * 6 4 3 33 33 H 0.96996 * 119.99981 * 0.02562 * 9 8 7 34 34 H 1.09003 * 109.46666 * 300.00229 * 12 10 9 35 35 H 1.08999 * 109.46748 * 59.99552 * 12 10 9 36 36 H 1.09000 * 109.47295 * 59.99690 * 13 12 10 37 37 H 1.09007 * 109.46785 * 180.02562 * 13 12 10 38 38 H 1.08005 * 119.95487 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.92997 * 180.02562 * 20 19 18 40 40 H 1.08005 * 120.03827 * 180.29103 * 22 21 20 41 41 H 1.08994 * 109.47638 * 180.02562 * 23 14 13 42 42 H 1.09003 * 109.46921 * 59.99683 * 23 14 13 43 43 H 1.08995 * 109.47315 * 59.99969 * 24 10 9 44 44 H 1.09003 * 109.47351 * 299.99954 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4829 -0.0006 5 8 2.0693 3.1230 1.2343 6 14 2.4876 3.4406 -1.4136 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2384 -0.8926 -0.0015 10 6 5.5065 -2.3328 -0.0019 11 1 4.7459 -2.8442 0.5881 12 6 5.4753 -2.8571 -1.4390 13 6 5.7547 -4.3613 -1.4393 14 6 7.1335 -4.6241 -0.8305 15 1 7.8945 -4.1131 -1.4203 16 8 7.3948 -6.0290 -0.8313 17 6 8.0091 -6.5407 -1.9275 18 7 8.3386 -5.7461 -2.9355 19 6 8.9368 -6.2479 -4.0028 20 6 9.2182 -7.5992 -4.0682 21 7 8.8908 -8.3951 -3.0641 22 6 8.2991 -7.8996 -1.9936 23 6 7.1648 -4.0999 0.6066 24 6 6.8856 -2.5951 0.6067 25 16 2.5413 -1.4261 -0.0066 26 1 -0.3633 0.0919 -1.0235 27 1 -0.3633 -0.9325 0.4322 28 1 -0.3633 0.8404 0.5914 29 1 0.6580 2.4498 -0.1161 30 1 3.0191 3.1877 1.4036 31 1 2.1805 2.7677 -2.7014 32 1 1.9544 4.8265 -1.4256 33 1 5.9755 -0.2621 -0.0019 34 1 4.4928 -2.6702 -1.8725 35 1 6.2359 -2.3457 -2.0288 36 1 4.9937 -4.8723 -0.8495 37 1 5.7329 -4.7346 -2.4632 38 1 9.2059 -5.6006 -4.8244 39 1 9.7072 -8.0062 -4.9409 40 1 8.0361 -8.5492 -1.1717 41 1 8.1472 -4.2867 1.0402 42 1 6.4038 -4.6109 1.1964 43 1 6.9079 -2.2216 1.6305 44 1 7.6463 -2.0837 0.0168 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12806124_15704122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:12 Heat of formation + Delta-G solvation = 29.191666 kcal Electronic energy + Delta-G solvation = -27786.602916 eV Core-core repulsion = 23832.797185 eV Total energy + Delta-G solvation = -3953.805731 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.32014 -41.12921 -40.52365 -38.89110 -37.50683 -35.73465 -35.07640 -33.23925 -32.01746 -31.81906 -29.95262 -28.62615 -26.04015 -25.68693 -25.09375 -24.59598 -23.75934 -23.00614 -21.49382 -20.36072 -19.56115 -19.15398 -18.77393 -17.96331 -17.74158 -17.45181 -17.04834 -16.89240 -16.40274 -15.99853 -15.81803 -15.57382 -15.34925 -15.34547 -15.00596 -14.44436 -14.31049 -14.25039 -14.07350 -14.03414 -13.73410 -13.57484 -13.40471 -13.25524 -12.94459 -12.80731 -12.67173 -12.49279 -12.32014 -12.24861 -12.12626 -11.90537 -11.59445 -11.37773 -10.95823 -10.69831 -10.48018 -10.25699 -10.05349 -9.73590 -8.67032 -4.94350 -0.17512 -0.06693 0.07094 0.13117 0.70150 1.24195 1.60710 1.70581 1.79282 1.93713 1.95913 2.66902 3.02499 3.35898 3.37200 3.45740 3.48166 3.56574 3.64285 3.84285 3.93992 4.00248 4.01678 4.13707 4.15304 4.20970 4.24240 4.29367 4.35769 4.40493 4.52427 4.57250 4.64338 4.65693 4.77846 4.86216 4.89353 4.95237 5.01362 5.03145 5.07833 5.17065 5.18560 5.28670 5.61885 6.03476 6.18464 6.34949 6.63204 6.71512 6.87957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.268 4.268 3 C 0.061 3.939 4 C -0.037 4.037 5 O -0.549 6.549 6 Si 0.777 3.223 7 N -0.554 5.554 8 C 0.315 3.685 9 N -0.679 5.679 10 C 0.152 3.848 11 H 0.083 0.917 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.087 3.913 15 H 0.087 0.913 16 O -0.300 6.300 17 C 0.264 3.736 18 N -0.511 5.511 19 C 0.096 3.904 20 C 0.001 3.999 21 N -0.430 5.430 22 C 0.027 3.973 23 C -0.109 4.109 24 C -0.111 4.111 25 S 0.112 5.888 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.393 0.607 31 H -0.297 1.297 32 H -0.281 1.281 33 H 0.420 0.580 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.205 0.795 39 H 0.200 0.800 40 H 0.186 0.814 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 -1.566 -0.914 4.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.391 4.391 3 C -0.069 4.069 4 C -0.150 4.150 5 O -0.356 6.356 6 Si 0.682 3.318 7 N -0.281 5.281 8 C -0.057 4.057 9 N -0.319 5.319 10 C 0.047 3.953 11 H 0.101 0.899 12 C -0.164 4.164 13 C -0.163 4.163 14 C 0.031 3.969 15 H 0.105 0.895 16 O -0.205 6.205 17 C 0.083 3.917 18 N -0.241 5.241 19 C -0.063 4.063 20 C -0.157 4.157 21 N -0.145 5.145 22 C -0.135 4.135 23 C -0.147 4.147 24 C -0.149 4.149 25 S 0.361 5.639 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.139 0.861 30 H 0.243 0.757 31 H -0.224 1.224 32 H -0.207 1.207 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.222 0.778 39 H 0.217 0.783 40 H 0.203 0.797 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.177 -2.072 -1.318 4.015 hybrid contribution -0.520 0.694 -0.045 0.868 sum 2.657 -1.378 -1.363 3.289 Atomic orbital electron populations 1.20248 0.86034 1.03777 1.03201 1.25442 1.02151 0.93777 1.17755 1.20210 0.87307 0.97462 1.01970 1.24822 1.03258 0.89761 0.97117 1.86434 1.31139 1.79547 1.38460 0.92970 0.90416 0.75615 0.72762 1.65970 1.16928 1.17084 1.28152 1.23502 0.92685 0.91457 0.98043 1.44063 1.01099 1.07409 1.79345 1.21261 0.99273 0.78309 0.96492 0.89906 1.21913 1.02892 0.94718 0.96877 1.21823 0.96734 0.96362 1.01386 1.22595 0.97674 0.77781 0.98886 0.89497 1.86315 1.71954 1.27477 1.34798 1.21071 0.91561 0.91648 0.87467 1.68087 1.14799 1.38911 1.02276 1.24110 0.91595 0.95479 0.95087 1.24139 1.00478 0.92061 0.99020 1.68498 1.07120 1.38606 1.00239 1.23153 1.00049 0.91533 0.98774 1.21553 1.04316 0.95032 0.93798 1.21670 0.94734 0.95373 1.03121 1.83877 0.96274 1.09723 1.73993 0.90254 0.90491 0.90083 0.86105 0.75713 1.22429 1.20729 0.74070 0.91657 0.90392 0.90698 0.92154 0.77815 0.78321 0.79677 0.89651 0.90014 0.88770 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.03 9.71 71.23 0.69 0.66 16 2 C -0.27 -1.20 6.57 24.57 0.16 -1.04 16 3 C 0.06 0.33 5.19 41.40 0.21 0.54 16 4 C -0.04 -0.14 2.84 71.23 0.20 0.06 16 5 O -0.55 -2.53 12.88 -148.98 -1.92 -4.45 16 6 Si 0.78 2.30 32.62 68.60 2.24 4.54 16 7 N -0.55 -2.58 9.77 -189.87 -1.85 -4.44 16 8 C 0.31 0.68 8.22 179.32 1.47 2.16 16 9 N -0.68 2.30 5.23 -330.40 -1.73 0.57 16 10 C 0.15 -0.87 2.40 44.99 0.11 -0.76 16 11 H 0.08 -0.40 7.26 -2.39 -0.02 -0.42 16 12 C -0.12 0.53 5.51 30.59 0.17 0.69 16 13 C -0.12 0.34 5.54 30.59 0.17 0.50 16 14 C 0.09 -0.21 2.39 30.59 0.07 -0.14 16 15 H 0.09 -0.11 7.00 -2.39 -0.02 -0.12 16 16 O -0.30 -0.48 9.77 -89.95 -0.88 -1.36 16 17 C 0.26 0.74 7.46 84.80 0.63 1.37 16 18 N -0.51 -0.86 8.83 -308.19 -2.72 -3.58 16 19 C 0.10 -0.27 11.22 84.62 0.95 0.68 16 20 C 0.00 0.00 11.21 84.62 0.95 0.95 16 21 N -0.43 -1.51 10.49 -194.82 -2.04 -3.56 16 22 C 0.03 0.07 11.18 84.88 0.95 1.02 16 23 C -0.11 0.68 5.58 30.61 0.17 0.85 16 24 C -0.11 0.95 5.39 30.61 0.17 1.11 16 25 S 0.11 0.22 21.67 -56.49 -1.22 -1.01 16 26 H 0.08 -0.10 8.14 -2.39 -0.02 -0.11 16 27 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 28 H 0.08 -0.01 7.17 -2.39 -0.02 -0.02 16 29 H 0.12 0.32 6.33 -2.39 -0.02 0.30 16 30 H 0.39 -0.44 8.70 -74.06 -0.64 -1.08 16 31 H -0.30 -2.64 7.11 99.48 0.71 -1.93 16 32 H -0.28 -2.10 7.11 99.48 0.71 -1.39 16 33 H 0.42 -2.43 8.73 -92.71 -0.81 -3.23 16 34 H 0.06 -0.13 8.02 -2.39 -0.02 -0.15 16 35 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 38 H 0.21 -2.07 8.06 -2.91 -0.02 -2.09 16 39 H 0.20 -1.65 8.06 -2.91 -0.02 -1.67 16 40 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 41 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 Total: 0.00 -16.94 376.53 -3.42 -20.36 By element: Atomic # 1 Polarization: -15.36 SS G_CDS: -0.37 Total: -15.73 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 7.08 Total: 8.66 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -8.35 Total: -11.00 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: -2.80 Total: -5.81 kcal Atomic # 14 Polarization: 2.30 SS G_CDS: 2.24 Total: 4.54 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -1.22 Total: -1.01 kcal Total: -16.94 -3.42 -20.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12806124_15704122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -16.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds