Wall clock time and date at job start Mon Mar 8 2021 06:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47230 * 2 1 4 4 C 1.50701 * 109.47228 * 120.00279 * 2 1 3 5 5 C 1.37979 * 120.32707 * 244.99537 * 4 2 1 6 6 N 1.32004 * 120.90372 * 179.97438 * 5 4 2 7 7 C 1.32339 * 121.64544 * 0.02562 * 6 5 4 8 8 N 1.39145 * 119.71919 * 179.97438 * 7 6 5 9 9 C 1.46502 * 119.99890 * 359.97438 * 8 7 6 10 10 H 1.08999 * 109.47171 * 35.00358 * 9 8 7 11 11 C 1.52998 * 109.47085 * 155.00398 * 9 8 7 12 12 C 1.52995 * 109.47388 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47378 * 300.00098 * 12 11 9 14 14 H 1.08999 * 109.46877 * 299.99856 * 13 12 11 15 15 O 1.42899 * 109.47598 * 179.97438 * 13 12 11 16 16 C 1.35675 * 117.00113 * 149.99614 * 15 13 12 17 17 C 1.39071 * 120.07188 * 180.02562 * 16 15 13 18 18 N 1.31997 * 119.91912 * 180.28028 * 17 16 15 19 19 C 1.32208 * 120.06618 * 359.48879 * 18 17 16 20 20 C 1.38233 * 120.14266 * 0.51113 * 19 18 17 21 21 N 1.32213 * 120.07897 * 359.74919 * 20 19 18 22 22 C 1.52998 * 109.46941 * 59.99628 * 13 12 11 23 23 C 1.53000 * 109.46990 * 275.00335 * 9 8 7 24 24 C 1.39339 * 120.56396 * 0.25052 * 7 6 5 25 25 F 1.35101 * 120.47408 * 179.72267 * 24 7 6 26 26 C 1.38447 * 119.05882 * 359.49741 * 24 7 6 27 27 H 0.96698 * 113.99727 * 299.99627 * 1 2 3 28 28 H 1.08999 * 109.47118 * 240.00199 * 2 1 3 29 29 H 1.48496 * 110.00204 * 299.99985 * 3 2 1 30 30 H 1.48494 * 109.99847 * 61.32460 * 3 2 1 31 31 H 1.08003 * 119.55226 * 0.02562 * 5 4 2 32 32 H 0.97005 * 120.00120 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47149 * 59.99946 * 11 9 8 34 34 H 1.09002 * 109.47434 * 300.00216 * 11 9 8 35 35 H 1.09001 * 109.47322 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.46999 * 59.99880 * 12 11 9 37 37 H 1.08002 * 120.03672 * 359.97438 * 17 16 15 38 38 H 1.08004 * 119.93313 * 180.23471 * 19 18 17 39 39 H 1.07997 * 119.96540 * 179.72078 * 20 19 18 40 40 H 1.08999 * 109.47149 * 60.00394 * 22 13 12 41 41 H 1.09002 * 109.47434 * 180.02562 * 22 13 12 42 42 H 1.09001 * 109.47560 * 299.99641 * 23 9 8 43 43 H 1.09001 * 109.47214 * 60.00151 * 23 9 8 44 44 H 1.07997 * 120.76674 * 180.24226 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6382 -0.0203 2.1937 6 7 3.0831 -0.6311 3.2760 7 6 2.8722 -1.9213 3.4814 8 7 3.3598 -2.5247 4.6365 9 6 4.1036 -1.7322 5.6188 10 1 3.6907 -0.7244 5.6603 11 6 3.9877 -2.3880 6.9963 12 6 4.7650 -1.5608 8.0221 13 6 6.2375 -1.4927 7.6120 14 1 6.6500 -2.5007 7.5704 15 8 6.9634 -0.7195 8.5698 16 6 8.2690 -1.0380 8.7563 17 6 9.0356 -0.3272 9.6734 18 7 10.3069 -0.6360 9.8485 19 6 10.8489 -1.6262 9.1603 20 6 10.0894 -2.3346 8.2480 21 7 8.8168 -2.0268 8.0644 22 6 6.3534 -0.8369 6.2346 23 6 5.5761 -1.6636 5.2090 24 6 2.1709 -2.6820 2.5481 25 9 1.9614 -4.0002 2.7569 26 6 1.6877 -2.0667 1.4058 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5616 2.4679 -1.2084 30 1 1.5881 2.4584 1.2243 31 1 2.8295 1.0343 2.0607 32 1 3.2072 -3.4701 4.7914 33 1 4.4006 -3.3959 6.9548 34 1 2.9386 -2.4370 7.2883 35 1 4.6820 -2.0277 9.0035 36 1 4.3524 -0.5527 8.0636 37 1 8.5924 0.4797 10.2382 38 1 11.8883 -1.8795 9.3080 39 1 10.5362 -3.1400 7.6841 40 1 5.9409 0.1712 6.2762 41 1 7.4024 -0.7887 5.9422 42 1 5.9892 -2.6715 5.1675 43 1 5.6587 -1.1964 4.2276 44 1 1.1371 -2.6291 0.6662 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12806124_17656566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:16 Heat of formation + Delta-G solvation = -16.136952 kcal Electronic energy + Delta-G solvation = -29770.422156 eV Core-core repulsion = 25411.582225 eV Total energy + Delta-G solvation = -4358.839930 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.95732 -42.31631 -41.49608 -40.44476 -38.83309 -37.89001 -35.71201 -35.07333 -33.29099 -32.24868 -31.94941 -31.43887 -29.40583 -26.53764 -25.88777 -25.25203 -24.74809 -23.85129 -23.13404 -22.54550 -21.19484 -19.60406 -19.32503 -18.76104 -18.51309 -18.36011 -17.73526 -17.65172 -17.05810 -16.93378 -16.71234 -16.17351 -15.95226 -15.91608 -15.63236 -15.50192 -15.30234 -15.18355 -14.53314 -14.44887 -14.34055 -14.19673 -13.95687 -13.72235 -13.49166 -13.34389 -13.17037 -12.80977 -12.73401 -12.59763 -12.33844 -12.21729 -12.06001 -12.04181 -11.67800 -11.34747 -11.08659 -10.77538 -10.63558 -10.54039 -10.24896 -9.72823 -8.78797 -4.89438 -0.17081 -0.08909 0.07659 0.10282 1.31095 1.61605 1.73459 1.98532 1.99516 2.53054 2.67444 3.01192 3.03743 3.26524 3.36595 3.43257 3.47976 3.56366 3.60002 3.62141 3.84601 3.93082 3.95628 4.06674 4.10626 4.16241 4.24029 4.31106 4.37756 4.38815 4.43050 4.51454 4.54592 4.66058 4.73117 4.74249 4.85845 4.98719 4.98907 5.05197 5.06130 5.10700 5.22628 5.28772 5.42753 5.95804 6.04402 6.18584 6.19174 6.49960 6.71995 6.95464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.067 4.067 3 Si 0.763 3.237 4 C -0.203 4.203 5 C 0.145 3.855 6 N -0.525 5.525 7 C 0.385 3.615 8 N -0.710 5.710 9 C 0.160 3.840 10 H 0.086 0.914 11 C -0.116 4.116 12 C -0.107 4.107 13 C 0.089 3.911 14 H 0.085 0.915 15 O -0.301 6.301 16 C 0.263 3.737 17 C 0.027 3.973 18 N -0.429 5.429 19 C 0.002 3.998 20 C 0.096 3.904 21 N -0.512 5.512 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.037 4.037 25 F -0.141 7.141 26 C -0.040 4.040 27 H 0.386 0.614 28 H 0.129 0.871 29 H -0.301 1.301 30 H -0.275 1.275 31 H 0.180 0.820 32 H 0.416 0.584 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.186 0.814 38 H 0.201 0.799 39 H 0.205 0.795 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 -1.001 -0.053 2.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.177 4.177 3 Si 0.668 3.332 4 C -0.208 4.208 5 C -0.012 4.012 6 N -0.242 5.242 7 C 0.146 3.854 8 N -0.342 5.342 9 C 0.055 3.945 10 H 0.104 0.896 11 C -0.154 4.154 12 C -0.145 4.145 13 C 0.033 3.967 14 H 0.103 0.897 15 O -0.206 6.206 16 C 0.082 3.918 17 C -0.135 4.135 18 N -0.144 5.144 19 C -0.156 4.156 20 C -0.063 4.063 21 N -0.242 5.242 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.064 4.064 25 F -0.120 7.120 26 C -0.066 4.066 27 H 0.236 0.764 28 H 0.146 0.854 29 H -0.229 1.229 30 H -0.202 1.202 31 H 0.197 0.803 32 H 0.254 0.746 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.203 0.797 38 H 0.218 0.782 39 H 0.222 0.778 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.768 0.246 0.302 2.795 hybrid contribution -1.649 -1.440 -0.261 2.205 sum 1.119 -1.194 0.041 1.637 Atomic orbital electron populations 1.86589 1.18525 1.80357 1.50204 1.25021 0.83321 1.11586 0.97722 0.94135 0.90241 0.71883 0.76939 1.20883 1.05487 0.94194 1.00237 1.22720 0.91023 1.00295 0.87138 1.67368 1.25587 1.07344 1.23898 1.18562 0.90422 0.89081 0.87340 1.44682 1.58677 1.12364 1.18500 1.20973 0.90793 0.95913 0.86809 0.89622 1.21706 1.01689 0.99711 0.92313 1.21511 0.91202 1.02200 0.99599 1.22567 0.91840 0.95462 0.86872 0.89741 1.86310 1.17446 1.57619 1.59258 1.21077 0.86579 0.91585 0.92552 1.23136 0.89804 1.01959 0.98618 1.68494 1.10228 1.14126 1.21540 1.24156 1.03560 0.93131 0.94788 1.24129 0.87828 0.98923 0.95390 1.68088 1.14795 1.15791 1.25519 1.21785 1.00520 1.00121 0.93556 1.21750 0.94570 1.00380 0.98555 1.18141 1.09769 0.79336 0.99106 1.91468 1.93890 1.31551 1.95054 1.21446 0.95291 0.94907 0.94979 0.76418 0.85358 1.22900 1.20155 0.80309 0.74597 0.90190 0.89459 0.89976 0.90210 0.79675 0.78208 0.77791 0.90926 0.92364 0.91584 0.91646 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.29 12.84 -148.98 -1.91 -2.20 16 2 C -0.07 0.19 2.82 71.24 0.20 0.40 16 3 Si 0.76 -3.22 29.91 68.60 2.05 -1.17 16 4 C -0.20 0.26 5.36 -19.76 -0.11 0.16 16 5 C 0.15 -0.13 9.83 84.61 0.83 0.70 16 6 N -0.52 -1.32 9.20 -193.04 -1.78 -3.09 16 7 C 0.38 1.00 7.47 133.08 0.99 1.99 16 8 N -0.71 0.48 5.22 -324.28 -1.69 -1.21 16 9 C 0.16 -0.33 2.47 44.99 0.11 -0.21 16 10 H 0.09 0.04 7.54 -2.39 -0.02 0.02 16 11 C -0.12 0.57 5.39 30.59 0.16 0.73 16 12 C -0.11 0.34 5.57 30.59 0.17 0.51 16 13 C 0.09 0.01 2.39 30.59 0.07 0.08 16 14 H 0.08 0.12 7.00 -2.39 -0.02 0.10 16 15 O -0.30 -1.08 9.77 -89.92 -0.88 -1.96 16 16 C 0.26 1.12 7.46 84.79 0.63 1.75 16 17 C 0.03 0.10 11.18 84.87 0.95 1.05 16 18 N -0.43 -1.83 10.49 -194.81 -2.04 -3.88 16 19 C 0.00 0.00 11.21 84.64 0.95 0.95 16 20 C 0.10 -0.18 11.22 84.63 0.95 0.77 16 21 N -0.51 -1.58 8.83 -308.18 -2.72 -4.30 16 22 C -0.12 -0.01 5.54 30.58 0.17 0.16 16 23 C -0.11 0.11 5.51 30.58 0.17 0.28 16 24 C -0.04 -0.11 7.35 22.58 0.17 0.05 16 25 F -0.14 -0.63 16.65 44.97 0.75 0.12 16 26 C -0.04 -0.04 9.82 22.48 0.22 0.18 16 27 H 0.39 -1.90 8.70 -74.06 -0.64 -2.54 16 28 H 0.13 -0.60 7.96 -2.39 -0.02 -0.62 16 29 H -0.30 -1.17 7.11 99.48 0.71 -0.46 16 30 H -0.28 0.28 7.01 99.48 0.70 0.98 16 31 H 0.18 -0.95 4.84 -2.91 -0.01 -0.96 16 32 H 0.42 -1.16 8.07 -92.70 -0.75 -1.91 16 33 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.19 -0.04 8.06 -2.91 -0.02 -0.06 16 38 H 0.20 -1.57 8.06 -2.91 -0.02 -1.59 16 39 H 0.21 -1.91 8.06 -2.91 -0.02 -1.93 16 40 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.07 -0.06 8.14 -2.39 -0.02 -0.07 16 43 H 0.06 0.10 8.14 -2.39 -0.02 0.09 16 44 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 Total: 0.00 -16.76 369.11 -1.89 -18.65 By element: Atomic # 1 Polarization: -10.21 SS G_CDS: -0.31 Total: -10.52 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.64 Total: 9.56 kcal Atomic # 7 Polarization: -4.25 SS G_CDS: -8.23 Total: -12.48 kcal Atomic # 8 Polarization: -1.37 SS G_CDS: -2.79 Total: -4.16 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 0.75 Total: 0.12 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.05 Total: -1.17 kcal Total: -16.76 -1.89 -18.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12806124_17656566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.511 kcal (2) G-P(sol) polarization free energy of solvation -16.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds