Wall clock time and date at job start Mon Mar 8 2021 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.46722 * 2 1 4 4 C 1.50699 * 109.47458 * 119.99973 * 2 1 3 5 5 C 1.38840 * 120.33410 * 64.97684 * 4 2 1 6 6 C 1.38345 * 118.50398 * 179.77031 * 5 4 2 7 7 C 1.39093 * 119.09772 * 0.51551 * 6 5 4 8 8 N 1.39002 * 119.70639 * 179.74636 * 7 6 5 9 9 C 1.46508 * 120.00060 * 359.73320 * 8 7 6 10 10 C 1.52991 * 109.47429 * 179.97438 * 9 8 7 11 11 H 1.08999 * 112.90686 * 316.25260 * 10 9 8 12 12 C 1.53781 * 113.61611 * 87.50116 * 10 9 8 13 13 C 1.54049 * 87.08031 * 139.97702 * 12 10 9 14 14 H 1.08992 * 113.69868 * 220.05225 * 13 12 10 15 15 O 1.42907 * 113.61025 * 89.07067 * 13 12 10 16 16 C 1.53781 * 113.61529 * 184.99923 * 10 9 8 17 17 N 1.32424 * 120.58863 * 359.48131 * 7 6 5 18 18 C 1.31947 * 121.62492 * 0.24236 * 17 7 6 19 19 H 0.96698 * 114.00143 * 60.00499 * 1 2 3 20 20 H 1.09002 * 109.46878 * 240.00640 * 2 1 3 21 21 H 1.48496 * 110.00205 * 298.68211 * 3 2 1 22 22 H 1.48506 * 110.00135 * 60.00168 * 3 2 1 23 23 H 1.08004 * 120.74599 * 0.04974 * 5 4 2 24 24 H 1.08005 * 120.44860 * 180.26736 * 6 5 4 25 25 H 0.96996 * 120.00804 * 179.72627 * 8 7 6 26 26 H 1.08997 * 109.46666 * 59.99278 * 9 8 7 27 27 H 1.09002 * 109.46731 * 299.99918 * 9 8 7 28 28 H 1.09005 * 113.61471 * 254.53285 * 12 10 9 29 29 H 1.08996 * 113.61178 * 25.34627 * 12 10 9 30 30 H 0.96698 * 113.99817 * 82.62157 * 15 13 12 31 31 H 1.09002 * 113.61445 * 334.56787 * 16 10 9 32 32 H 1.09002 * 113.61408 * 105.38518 * 16 10 9 33 33 H 1.07996 * 119.57120 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6873 -2.0658 1.4064 6 6 2.1701 -2.6809 2.5477 7 6 2.8703 -1.9226 3.4801 8 7 3.3564 -2.5265 4.6338 9 6 3.1253 -3.9545 4.8662 10 6 3.7592 -4.3638 6.1971 11 1 4.7557 -3.9455 6.3388 12 6 2.8311 -4.1679 7.4076 13 6 3.3751 -5.5066 7.9416 14 1 2.6137 -6.1369 8.4007 15 8 4.5443 -5.3670 8.7514 16 6 3.6789 -5.8733 6.4793 17 7 3.0824 -0.6315 3.2760 18 6 2.6386 -0.0199 2.1943 19 1 -0.3933 0.4416 -0.7651 20 1 1.7923 -0.5137 -0.8901 21 1 1.5877 2.4586 -1.2242 22 1 1.5614 2.4679 1.2085 23 1 1.1369 -2.6283 0.6667 24 1 2.0021 -3.7347 2.7143 25 1 3.8487 -2.0027 5.2851 26 1 3.5742 -4.5314 4.0577 27 1 2.0532 -4.1484 4.8991 28 1 3.0960 -3.3107 8.0267 29 1 1.7714 -4.1957 7.1542 30 1 4.3597 -5.1364 9.6722 31 1 2.8509 -6.3688 5.9724 32 1 4.6278 -6.3932 6.3476 33 1 2.8310 1.0345 2.0614 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12857622_13915762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:00:41 Heat of formation + Delta-G solvation = -7.665960 kcal Electronic energy + Delta-G solvation = -16273.810180 eV Core-core repulsion = 13495.160796 eV Total energy + Delta-G solvation = -2778.649384 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32715 -40.54067 -38.07628 -36.94897 -35.42923 -33.40739 -31.70681 -28.75926 -26.85184 -25.89225 -24.84873 -23.47012 -22.16491 -20.77183 -18.74171 -18.47214 -18.20349 -17.82276 -16.66862 -16.48720 -16.17140 -15.87229 -15.48326 -15.19604 -15.03546 -14.47750 -14.07634 -14.01800 -13.80417 -13.73801 -13.47512 -13.09378 -12.29914 -12.24553 -11.97445 -11.87977 -11.37023 -11.05822 -10.78092 -10.63305 -10.52166 -10.23395 -8.62909 -4.93781 0.33982 0.51546 1.32091 1.61254 1.98157 2.12764 2.88732 2.97295 3.41569 3.46175 3.48359 3.61120 3.70186 3.80974 3.89112 4.10024 4.16555 4.17835 4.29044 4.42236 4.49013 4.53050 4.58078 4.64670 4.73683 4.82475 4.93015 5.05297 5.09573 5.24161 5.37097 5.59269 6.06287 6.47643 6.58517 6.60426 7.24686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.060 4.060 3 Si 0.677 3.323 4 C -0.190 4.190 5 C -0.004 4.004 6 C -0.240 4.240 7 C 0.407 3.593 8 N -0.722 5.722 9 C 0.136 3.864 10 C -0.116 4.116 11 H 0.102 0.898 12 C -0.168 4.168 13 C 0.077 3.923 14 H 0.070 0.930 15 O -0.552 6.552 16 C -0.124 4.124 17 N -0.540 5.540 18 C 0.159 3.841 19 H 0.378 0.622 20 H 0.074 0.926 21 H -0.260 1.260 22 H -0.253 1.253 23 H 0.134 0.866 24 H 0.133 0.867 25 H 0.406 0.594 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.383 0.617 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -2.354 -0.327 2.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.170 4.170 3 Si 0.578 3.422 4 C -0.195 4.195 5 C -0.030 4.030 6 C -0.265 4.265 7 C 0.171 3.829 8 N -0.354 5.354 9 C 0.011 3.989 10 C -0.134 4.134 11 H 0.120 0.880 12 C -0.205 4.205 13 C 0.018 3.982 14 H 0.088 0.912 15 O -0.357 6.357 16 C -0.162 4.162 17 N -0.256 5.256 18 C 0.001 3.999 19 H 0.226 0.774 20 H 0.092 0.908 21 H -0.185 1.185 22 H -0.178 1.178 23 H 0.152 0.848 24 H 0.150 0.850 25 H 0.242 0.758 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.231 0.769 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.936 -1.736 0.323 1.998 hybrid contribution -1.743 -0.255 -0.395 1.805 sum -0.806 -1.991 -0.072 2.149 Atomic orbital electron populations 1.86601 1.18161 1.80075 1.49718 1.24525 0.84113 1.10579 0.97823 0.95159 0.91727 0.74865 0.80432 1.19895 1.05947 0.95138 0.98533 1.21165 0.92885 0.93490 0.95489 1.21422 1.06918 1.01311 0.96818 1.18396 0.89282 0.88470 0.86750 1.44499 1.60686 1.09377 1.20844 1.21472 1.00093 0.80273 0.97021 1.22703 1.00319 0.97195 0.93230 0.88014 1.23792 0.99762 0.99023 0.97944 1.22719 0.87531 0.96085 0.91909 0.91163 1.86463 1.31328 1.92834 1.25120 1.23022 1.03580 0.95508 0.94069 1.67172 1.26058 1.09077 1.23332 1.22198 0.91597 0.98839 0.87257 0.77394 0.90821 1.18501 1.17801 0.84820 0.84953 0.75817 0.91531 0.91654 0.90707 0.89107 0.76874 0.88387 0.90021 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.84 12.82 -35.23 -0.45 -1.29 16 2 C -0.06 -0.02 2.81 36.01 0.10 0.08 16 3 Si 0.68 -0.31 29.88 -169.99 -5.08 -5.39 16 4 C -0.19 -0.41 5.39 -104.47 -0.56 -0.98 16 5 C 0.00 -0.01 9.83 -39.32 -0.39 -0.39 16 6 C -0.24 -0.41 9.33 -39.22 -0.37 -0.78 16 7 C 0.41 1.15 7.65 -155.02 -1.19 -0.03 16 8 N -0.72 -0.52 5.73 -60.43 -0.35 -0.86 16 9 C 0.14 -0.19 4.73 -4.04 -0.02 -0.21 16 10 C -0.12 0.18 3.69 -89.81 -0.33 -0.15 16 11 H 0.10 -0.04 8.14 -51.93 -0.42 -0.47 16 12 C -0.17 0.29 7.47 -25.78 -0.19 0.10 16 13 C 0.08 -0.11 5.29 -25.77 -0.14 -0.24 16 14 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 15 O -0.55 0.01 13.59 -35.23 -0.48 -0.47 16 16 C -0.12 0.21 7.46 -25.92 -0.19 0.02 16 17 N -0.54 -2.20 10.39 -12.44 -0.13 -2.33 16 18 C 0.16 0.44 9.84 -17.57 -0.17 0.27 16 19 H 0.38 -0.94 8.74 45.56 0.40 -0.54 16 20 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 21 H -0.26 -0.35 7.11 56.52 0.40 0.05 16 22 H -0.25 -0.68 7.05 56.52 0.40 -0.28 16 23 H 0.13 0.03 8.06 -52.48 -0.42 -0.39 16 24 H 0.13 -0.04 6.71 -52.48 -0.35 -0.39 16 25 H 0.41 0.20 8.60 -40.82 -0.35 -0.15 16 26 H 0.07 -0.11 7.92 -51.93 -0.41 -0.52 16 27 H 0.07 -0.11 7.64 -51.93 -0.40 -0.51 16 28 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.09 -0.20 7.90 -51.93 -0.41 -0.61 16 30 H 0.38 -1.49 9.12 45.56 0.42 -1.08 16 31 H 0.10 -0.31 8.10 -51.93 -0.42 -0.73 16 32 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.16 0.13 4.87 -52.49 -0.26 -0.12 16 LS Contribution 278.24 15.07 4.19 4.19 Total: 0.00 -7.07 278.24 -9.25 -16.32 By element: Atomic # 1 Polarization: -4.34 SS G_CDS: -3.51 Total: -7.85 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.45 Total: -2.32 kcal Atomic # 7 Polarization: -2.72 SS G_CDS: -0.48 Total: -3.19 kcal Atomic # 8 Polarization: -0.83 SS G_CDS: -0.93 Total: -1.76 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: -5.08 Total: -5.39 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -7.07 -9.25 -16.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12857622_13915762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.651 kcal (2) G-P(sol) polarization free energy of solvation -7.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds