Wall clock time and date at job start Mon Mar 8 2021 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.46722 * 2 1 4 4 C 1.50699 * 109.47458 * 119.99973 * 2 1 3 5 5 C 1.38840 * 120.33410 * 64.97684 * 4 2 1 6 6 C 1.38345 * 118.50398 * 179.77031 * 5 4 2 7 7 C 1.39093 * 119.09772 * 0.51551 * 6 5 4 8 8 N 1.39002 * 119.70639 * 179.74636 * 7 6 5 9 9 C 1.46508 * 120.00060 * 359.73320 * 8 7 6 10 10 C 1.52991 * 109.47429 * 179.97438 * 9 8 7 11 11 H 1.08999 * 112.90686 * 316.25260 * 10 9 8 12 12 C 1.53781 * 113.61611 * 87.50116 * 10 9 8 13 13 C 1.54049 * 87.08031 * 139.97702 * 12 10 9 14 14 H 1.08992 * 113.69868 * 220.05225 * 13 12 10 15 15 O 1.42907 * 113.61025 * 89.07067 * 13 12 10 16 16 C 1.53781 * 113.61529 * 184.99923 * 10 9 8 17 17 N 1.32424 * 120.58863 * 359.48131 * 7 6 5 18 18 C 1.31947 * 121.62492 * 0.24236 * 17 7 6 19 19 H 0.96698 * 114.00143 * 60.00499 * 1 2 3 20 20 H 1.09002 * 109.46878 * 240.00640 * 2 1 3 21 21 H 1.48496 * 110.00205 * 298.68211 * 3 2 1 22 22 H 1.48506 * 110.00135 * 60.00168 * 3 2 1 23 23 H 1.08004 * 120.74599 * 0.04974 * 5 4 2 24 24 H 1.08005 * 120.44860 * 180.26736 * 6 5 4 25 25 H 0.96996 * 120.00804 * 179.72627 * 8 7 6 26 26 H 1.08997 * 109.46666 * 59.99278 * 9 8 7 27 27 H 1.09002 * 109.46731 * 299.99918 * 9 8 7 28 28 H 1.09005 * 113.61471 * 254.53285 * 12 10 9 29 29 H 1.08996 * 113.61178 * 25.34627 * 12 10 9 30 30 H 0.96698 * 113.99817 * 82.62157 * 15 13 12 31 31 H 1.09002 * 113.61445 * 334.56787 * 16 10 9 32 32 H 1.09002 * 113.61408 * 105.38518 * 16 10 9 33 33 H 1.07996 * 119.57120 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6873 -2.0658 1.4064 6 6 2.1701 -2.6809 2.5477 7 6 2.8703 -1.9226 3.4801 8 7 3.3564 -2.5265 4.6338 9 6 3.1253 -3.9545 4.8662 10 6 3.7592 -4.3638 6.1971 11 1 4.7557 -3.9455 6.3388 12 6 2.8311 -4.1679 7.4076 13 6 3.3751 -5.5066 7.9416 14 1 2.6137 -6.1369 8.4007 15 8 4.5443 -5.3670 8.7514 16 6 3.6789 -5.8733 6.4793 17 7 3.0824 -0.6315 3.2760 18 6 2.6386 -0.0199 2.1943 19 1 -0.3933 0.4416 -0.7651 20 1 1.7923 -0.5137 -0.8901 21 1 1.5877 2.4586 -1.2242 22 1 1.5614 2.4679 1.2085 23 1 1.1369 -2.6283 0.6667 24 1 2.0021 -3.7347 2.7143 25 1 3.8487 -2.0027 5.2851 26 1 3.5742 -4.5314 4.0577 27 1 2.0532 -4.1484 4.8991 28 1 3.0960 -3.3107 8.0267 29 1 1.7714 -4.1957 7.1542 30 1 4.3597 -5.1364 9.6722 31 1 2.8509 -6.3688 5.9724 32 1 4.6278 -6.3932 6.3476 33 1 2.8310 1.0345 2.0614 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12857622_13915762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:00:40 Heat of formation + Delta-G solvation = -9.160844 kcal Electronic energy + Delta-G solvation = -16273.875003 eV Core-core repulsion = 13495.160796 eV Total energy + Delta-G solvation = -2778.714207 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40715 -40.44492 -38.11191 -36.94387 -35.39902 -33.51903 -31.76059 -28.72485 -26.71144 -25.92293 -24.92302 -23.43025 -22.22507 -20.65983 -18.76839 -18.50739 -18.21313 -17.81310 -16.66812 -16.46169 -16.12221 -15.87223 -15.52678 -15.23534 -15.04462 -14.47497 -14.08033 -14.06587 -13.87387 -13.73441 -13.33507 -13.01226 -12.37397 -12.16863 -11.99239 -11.85157 -11.29859 -11.04273 -10.76739 -10.64716 -10.59586 -10.30946 -8.69693 -4.91716 0.21843 0.40062 1.32438 1.59409 1.95286 2.10998 2.78454 3.16242 3.46104 3.54516 3.59708 3.63483 3.75624 3.84512 3.92758 4.07566 4.10467 4.24472 4.37114 4.48097 4.50655 4.65456 4.75990 4.76417 4.78007 4.86987 5.00553 5.05534 5.18369 5.28440 5.38414 5.53245 6.02147 6.51657 6.63623 6.84151 7.13291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.065 4.065 3 Si 0.751 3.249 4 C -0.200 4.200 5 C -0.012 4.012 6 C -0.242 4.242 7 C 0.391 3.609 8 N -0.721 5.721 9 C 0.138 3.862 10 C -0.112 4.112 11 H 0.087 0.913 12 C -0.163 4.163 13 C 0.072 3.928 14 H 0.083 0.917 15 O -0.575 6.575 16 C -0.123 4.123 17 N -0.567 5.567 18 C 0.143 3.857 19 H 0.394 0.606 20 H 0.097 0.903 21 H -0.281 1.281 22 H -0.301 1.301 23 H 0.150 0.850 24 H 0.152 0.848 25 H 0.404 0.596 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.397 0.603 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.098 -3.208 -0.896 3.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.175 4.175 3 Si 0.656 3.344 4 C -0.205 4.205 5 C -0.038 4.038 6 C -0.267 4.267 7 C 0.155 3.845 8 N -0.352 5.352 9 C 0.015 3.985 10 C -0.130 4.130 11 H 0.105 0.895 12 C -0.201 4.201 13 C 0.012 3.988 14 H 0.101 0.899 15 O -0.383 6.383 16 C -0.161 4.161 17 N -0.285 5.285 18 C -0.014 4.014 19 H 0.245 0.755 20 H 0.115 0.885 21 H -0.207 1.207 22 H -0.229 1.229 23 H 0.167 0.833 24 H 0.170 0.830 25 H 0.240 0.760 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.247 0.753 31 H 0.135 0.865 32 H 0.088 0.912 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.506 -2.609 -0.251 2.669 hybrid contribution -1.627 0.028 -0.176 1.637 sum -1.121 -2.580 -0.428 2.846 Atomic orbital electron populations 1.86549 1.18767 1.80572 1.51088 1.24658 0.83749 1.11085 0.97968 0.94284 0.90626 0.72877 0.76567 1.20119 1.05789 0.95589 0.98976 1.21442 0.92850 0.93570 0.95904 1.21655 1.06338 1.02197 0.96472 1.18680 0.89795 0.88430 0.87602 1.44627 1.60286 1.10085 1.20244 1.21555 1.00641 0.79158 0.97165 1.22604 0.99642 0.97471 0.93325 0.89467 1.23768 1.00073 0.98644 0.97599 1.22842 0.87441 0.96412 0.92055 0.89931 1.86422 1.32457 1.92974 1.26446 1.23085 1.03726 0.95122 0.94154 1.67150 1.27153 1.10034 1.24188 1.22421 0.92115 0.99397 0.87436 0.75535 0.88504 1.20749 1.22884 0.83251 0.83017 0.76018 0.90962 0.90758 0.91449 0.88300 0.75282 0.86548 0.91170 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.46 12.82 -148.98 -1.91 -3.37 16 2 C -0.06 -0.01 2.81 71.24 0.20 0.19 16 3 Si 0.75 -0.50 29.88 68.60 2.05 1.55 16 4 C -0.20 -0.87 5.39 -19.76 -0.11 -0.98 16 5 C -0.01 -0.04 9.83 22.44 0.22 0.18 16 6 C -0.24 -0.74 9.33 22.50 0.21 -0.53 16 7 C 0.39 2.39 7.65 133.05 1.02 3.40 16 8 N -0.72 -1.34 5.73 -345.09 -1.98 -3.32 16 9 C 0.14 -0.43 4.73 86.37 0.41 -0.02 16 10 C -0.11 0.33 3.69 -10.27 -0.04 0.29 16 11 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 12 C -0.16 0.58 7.47 31.21 0.23 0.81 16 13 C 0.07 -0.21 5.29 31.21 0.17 -0.05 16 14 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 15 O -0.57 -0.18 13.59 -148.98 -2.02 -2.20 16 16 C -0.12 0.46 7.46 31.12 0.23 0.70 16 17 N -0.57 -5.23 10.39 -193.27 -2.01 -7.24 16 18 C 0.14 0.93 9.84 84.63 0.83 1.76 16 19 H 0.39 -2.20 8.74 -74.06 -0.65 -2.85 16 20 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 21 H -0.28 -0.75 7.11 99.48 0.71 -0.05 16 22 H -0.30 -2.15 7.05 99.48 0.70 -1.45 16 23 H 0.15 -0.10 8.06 -2.91 -0.02 -0.13 16 24 H 0.15 -0.28 6.71 -2.91 -0.02 -0.30 16 25 H 0.40 0.82 8.60 -92.71 -0.80 0.02 16 26 H 0.07 -0.29 7.92 -2.39 -0.02 -0.31 16 27 H 0.07 -0.34 7.64 -2.39 -0.02 -0.36 16 28 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 29 H 0.10 -0.50 7.90 -2.39 -0.02 -0.52 16 30 H 0.40 -2.94 9.12 -74.06 -0.68 -3.62 16 31 H 0.12 -0.89 8.10 -2.39 -0.02 -0.91 16 32 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.16 0.49 4.87 -2.91 -0.01 0.48 16 Total: 0.00 -16.57 278.24 -3.44 -20.01 By element: Atomic # 1 Polarization: -10.23 SS G_CDS: -0.94 Total: -11.17 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 3.38 Total: 5.75 kcal Atomic # 7 Polarization: -6.57 SS G_CDS: -3.99 Total: -10.56 kcal Atomic # 8 Polarization: -1.64 SS G_CDS: -3.93 Total: -5.58 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: 2.05 Total: 1.55 kcal Total: -16.57 -3.44 -20.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12857622_13915762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.848 kcal (2) G-P(sol) polarization free energy of solvation -16.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds