Wall clock time and date at job start Mon Mar 8 2021 04:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47315 * 2 1 4 4 C 1.53005 * 109.46976 * 240.00237 * 2 1 3 5 5 O 1.45198 * 109.47338 * 120.00586 * 2 1 3 6 6 C 1.34229 * 117.00204 * 59.99409 * 5 2 1 7 7 O 1.20826 * 120.00207 * 0.02562 * 6 5 2 8 8 C 1.50699 * 119.99835 * 180.02562 * 6 5 2 9 9 H 1.08996 * 112.85237 * 311.19436 * 8 6 5 10 10 C 1.53775 * 113.61484 * 82.50859 * 8 6 5 11 11 C 1.53780 * 87.08620 * 139.98027 * 10 8 6 12 12 H 1.09001 * 113.69063 * 220.01178 * 11 10 8 13 13 N 1.46500 * 113.61717 * 89.11292 * 11 10 8 14 14 C 1.38998 * 119.99748 * 107.50767 * 13 11 10 15 15 N 1.32394 * 119.70418 * 180.02562 * 14 13 11 16 16 C 1.31974 * 121.62532 * 180.02562 * 15 14 13 17 17 C 1.38023 * 120.85239 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.33360 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47374 * 245.02780 * 18 17 16 20 20 Si 1.86305 * 109.47116 * 5.02163 * 18 17 16 21 21 C 1.38881 * 119.33177 * 0.02562 * 17 16 15 22 22 C 1.38293 * 118.50529 * 0.25125 * 21 17 16 23 23 C 1.53780 * 87.07670 * 334.56383 * 11 10 8 24 24 H 1.09000 * 109.47050 * 300.00064 * 1 2 3 25 25 H 1.08997 * 109.46671 * 60.00081 * 1 2 3 26 26 H 1.08999 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47350 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47480 * 300.00323 * 3 2 1 29 29 H 1.09005 * 109.46959 * 60.00448 * 3 2 1 30 30 H 1.09000 * 109.47164 * 299.99490 * 4 2 1 31 31 H 1.08998 * 109.46946 * 60.00212 * 4 2 1 32 32 H 1.09005 * 109.46930 * 179.97438 * 4 2 1 33 33 H 1.09000 * 113.61783 * 25.42770 * 10 8 6 34 34 H 1.09009 * 113.61355 * 254.52630 * 10 8 6 35 35 H 0.96996 * 120.00050 * 287.50879 * 13 11 10 36 36 H 1.08002 * 119.57490 * 179.97438 * 16 15 14 37 37 H 1.08995 * 109.47593 * 125.02246 * 18 17 16 38 38 H 0.96700 * 114.00626 * 59.99697 * 19 18 17 39 39 H 1.48503 * 109.99832 * 58.68244 * 20 18 17 40 40 H 1.48498 * 110.00235 * 179.97438 * 20 18 17 41 41 H 1.08002 * 120.74409 * 179.97438 * 21 17 16 42 42 H 1.08004 * 120.45379 * 179.72761 * 22 21 17 43 43 H 1.09005 * 113.61609 * 139.98076 * 23 11 10 44 44 H 1.09003 * 113.61793 * 270.88373 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1854 6 6 1.6533 -1.9685 1.3377 7 8 0.9566 -2.5028 0.5077 8 6 2.1174 -2.7435 2.5440 9 1 3.1879 -2.6452 2.7241 10 6 1.2559 -2.5086 3.7959 11 6 1.4000 -4.0129 4.0812 12 1 0.4859 -4.4782 4.4500 13 7 2.5749 -4.3469 4.8902 14 6 2.4185 -4.7342 6.2159 15 7 3.4842 -5.0343 6.9418 16 6 3.3796 -5.4069 8.2036 17 6 2.1455 -5.4968 8.8151 18 6 2.0396 -5.9240 10.2564 19 8 1.3507 -7.1736 10.3334 20 14 3.7479 -6.1115 10.9757 21 6 1.0023 -5.1906 8.0884 22 6 1.1429 -4.8088 6.7667 23 6 1.6194 -4.1982 2.5705 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.2341 -2.2027 3.5717 34 1 1.7345 -1.8748 4.5426 35 1 3.4618 -4.2977 4.5007 36 1 4.2712 -5.6445 8.7649 37 1 1.4891 -5.1703 10.8193 38 1 1.7849 -7.8924 9.8540 39 1 4.4861 -4.8271 10.8726 40 1 3.6573 -6.5319 12.3970 41 1 0.0251 -5.2536 8.5440 42 1 0.2747 -4.5679 6.1711 43 1 2.3913 -4.9285 2.3277 44 1 0.6969 -4.3542 2.0112 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12862688_13915762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:49:31 Heat of formation + Delta-G solvation = -41.040280 kcal Electronic energy + Delta-G solvation = -25059.713419 eV Core-core repulsion = 21366.095626 eV Total energy + Delta-G solvation = -3693.617793 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21419 -41.42052 -40.08177 -38.04036 -37.66167 -35.29720 -34.93523 -33.37867 -31.19812 -28.44118 -28.36722 -27.99245 -26.84316 -26.13290 -24.84603 -23.43841 -22.55008 -20.93400 -20.22484 -19.16947 -18.41598 -18.13945 -17.58188 -17.38577 -17.11768 -16.52565 -16.21746 -16.01643 -15.97902 -15.41866 -15.31914 -15.12291 -14.79901 -14.56824 -14.27898 -14.02452 -13.78910 -13.55303 -13.46651 -13.38657 -13.14078 -13.02607 -12.93154 -12.90644 -12.52992 -12.36794 -12.17580 -12.11533 -11.89537 -11.62556 -11.44391 -11.15545 -10.91350 -10.73510 -10.41212 -10.36773 -8.72045 -4.97973 0.23240 0.40774 1.12551 1.35463 1.65410 1.66509 1.98873 2.01428 2.82148 3.24441 3.34245 3.56217 3.59166 3.63688 3.67960 3.70272 3.73869 3.80581 3.89487 3.95794 4.06891 4.09556 4.34274 4.43243 4.52135 4.53997 4.56264 4.62729 4.68589 4.69834 4.75628 4.76848 4.81169 4.81610 4.90348 4.91050 5.01441 5.05242 5.07795 5.18897 5.22579 5.34264 5.52802 5.54657 6.02197 6.52615 6.76942 6.81598 7.14012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.358 6.358 6 C 0.471 3.529 7 O -0.523 6.523 8 C -0.113 4.113 9 H 0.134 0.866 10 C -0.131 4.131 11 C 0.138 3.862 12 H 0.118 0.882 13 N -0.701 5.701 14 C 0.398 3.602 15 N -0.562 5.562 16 C 0.147 3.853 17 C -0.236 4.236 18 C -0.054 4.054 19 O -0.557 6.557 20 Si 0.764 3.236 21 C -0.014 4.014 22 C -0.240 4.240 23 C -0.118 4.118 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.409 0.591 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.394 0.606 39 H -0.288 1.288 40 H -0.298 1.298 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.091 0.909 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 0.311 -1.594 1.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.197 4.197 4 C -0.238 4.238 5 O -0.275 6.275 6 C 0.315 3.685 7 O -0.412 6.412 8 C -0.132 4.132 9 H 0.152 0.848 10 C -0.170 4.170 11 C 0.031 3.969 12 H 0.136 0.864 13 N -0.333 5.333 14 C 0.163 3.837 15 N -0.280 5.280 16 C -0.010 4.010 17 C -0.241 4.241 18 C -0.165 4.165 19 O -0.365 6.365 20 Si 0.671 3.329 21 C -0.039 4.039 22 C -0.264 4.264 23 C -0.156 4.156 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.246 0.754 36 H 0.186 0.814 37 H 0.124 0.876 38 H 0.244 0.756 39 H -0.215 1.215 40 H -0.226 1.226 41 H 0.162 0.838 42 H 0.170 0.830 43 H 0.109 0.891 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.759 0.900 -1.407 1.835 hybrid contribution -0.896 0.539 -0.085 1.049 sum -0.137 1.439 -1.492 2.078 Atomic orbital electron populations 1.22454 0.93857 1.03692 1.03673 1.22428 0.94640 0.93207 0.82635 1.21883 1.02339 0.91402 1.04034 1.22461 1.01740 1.02135 0.97416 1.86574 1.69673 1.25638 1.45635 1.23891 0.76795 0.80547 0.87254 1.90584 1.36356 1.70385 1.43892 1.22759 1.03325 0.95898 0.91176 0.84831 1.23457 1.00611 0.98063 0.94846 1.21798 0.89476 0.94963 0.90624 0.86389 1.44181 1.09385 1.72462 1.07271 1.18560 0.89494 0.89559 0.86114 1.67123 1.32674 1.19778 1.08408 1.22444 0.96702 0.92479 0.89327 1.21053 0.94625 1.09769 0.98689 1.24835 1.08929 0.88019 0.94714 1.86457 1.53939 1.19084 1.76975 0.93907 0.75683 0.84139 0.79146 1.21413 0.99180 0.90583 0.92744 1.21709 0.97151 1.10362 0.97221 1.23304 1.03844 0.93476 0.94963 0.91725 0.89668 0.91622 0.91370 0.88725 0.91305 0.91713 0.89604 0.91872 0.88066 0.89665 0.75442 0.81427 0.87556 0.75598 1.21477 1.22573 0.83758 0.83018 0.89065 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.26 8.37 71.98 0.60 0.34 16 2 C 0.11 0.19 1.13 -10.79 -0.01 0.17 16 3 C -0.14 0.29 8.85 71.98 0.64 0.93 16 4 C -0.18 -0.34 8.37 71.98 0.60 0.26 16 5 O -0.36 -1.36 9.89 -51.41 -0.51 -1.87 16 6 C 0.47 1.39 6.79 71.24 0.48 1.88 16 7 O -0.52 -3.79 11.40 21.96 0.25 -3.54 16 8 C -0.11 0.36 4.14 -11.01 -0.05 0.31 16 9 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 10 C -0.13 0.65 7.43 31.12 0.23 0.88 16 11 C 0.14 -0.79 4.12 45.52 0.19 -0.60 16 12 H 0.12 -0.89 6.09 -2.39 -0.01 -0.91 16 13 N -0.70 1.92 5.44 -322.05 -1.75 0.17 16 14 C 0.40 0.61 7.65 133.07 1.02 1.63 16 15 N -0.56 -2.36 10.39 -193.26 -2.01 -4.37 16 16 C 0.15 0.19 9.84 84.62 0.83 1.03 16 17 C -0.24 -0.06 5.36 -19.76 -0.11 -0.17 16 18 C -0.05 0.05 2.82 71.24 0.20 0.25 16 19 O -0.56 0.17 12.84 -148.98 -1.91 -1.74 16 20 Si 0.76 -1.49 29.83 68.60 2.05 0.56 16 21 C -0.01 0.00 9.83 22.44 0.22 0.22 16 22 C -0.24 0.13 9.29 22.50 0.21 0.34 16 23 C -0.12 0.56 7.15 31.12 0.22 0.78 16 24 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.06 0.35 5.89 -2.39 -0.01 0.34 16 27 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 28 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 30 H 0.06 0.39 5.89 -2.39 -0.01 0.38 16 31 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.10 -0.53 8.09 -2.39 -0.02 -0.55 16 34 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 35 H 0.41 -1.43 8.82 -92.71 -0.82 -2.25 16 36 H 0.17 -0.50 4.91 -2.91 -0.01 -0.52 16 37 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 38 H 0.39 -3.14 8.70 -74.06 -0.64 -3.79 16 39 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 40 H -0.30 -1.63 7.11 99.48 0.71 -0.92 16 41 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 42 H 0.15 -0.73 6.03 -2.91 -0.02 -0.75 16 43 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 44 H 0.11 -0.32 7.44 -2.39 -0.02 -0.33 16 Total: 0.00 -16.01 354.44 1.00 -15.01 By element: Atomic # 1 Polarization: -12.08 SS G_CDS: -0.40 Total: -12.48 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.28 Total: 8.26 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: -3.76 Total: -4.19 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -2.17 Total: -7.15 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.05 Total: 0.56 kcal Total: -16.01 1.00 -15.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12862688_13915762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.034 kcal (2) G-P(sol) polarization free energy of solvation -16.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds