Wall clock time and date at job start Mon Mar 8 2021 04:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47396 * 239.99628 * 2 1 3 5 5 O 1.45207 * 109.46616 * 119.99708 * 2 1 3 6 6 C 1.34230 * 117.00219 * 60.00530 * 5 2 1 7 7 O 1.20828 * 119.99616 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00193 * 179.97438 * 6 5 2 9 9 H 1.09006 * 112.85046 * 311.19144 * 8 6 5 10 10 C 1.53779 * 113.69216 * 82.46000 * 8 6 5 11 11 C 1.53784 * 87.08045 * 139.99356 * 10 8 6 12 12 H 1.09004 * 113.61451 * 220.02152 * 11 10 8 13 13 N 1.46496 * 113.61524 * 89.11591 * 11 10 8 14 14 C 1.38613 * 119.99889 * 107.50169 * 13 11 10 15 15 N 1.29690 * 124.95073 * 0.02635 * 14 13 11 16 16 C 1.32114 * 116.86485 * 179.97438 * 15 14 13 17 17 C 1.33324 * 114.58446 * 0.02562 * 16 15 14 18 18 C 1.50695 * 125.95384 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47291 * 64.99966 * 18 17 16 20 20 Si 1.86306 * 109.47280 * 184.99669 * 18 17 16 21 21 S 1.70962 * 124.94718 * 179.72056 * 14 13 11 22 22 C 1.53779 * 113.61244 * 179.97438 * 8 6 5 23 23 H 1.08997 * 109.47072 * 300.00390 * 1 2 3 24 24 H 1.08999 * 109.46454 * 59.99977 * 1 2 3 25 25 H 1.08998 * 109.46844 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47487 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47098 * 299.99831 * 3 2 1 28 28 H 1.09008 * 109.47001 * 59.99528 * 3 2 1 29 29 H 1.09001 * 109.46907 * 300.00388 * 4 2 1 30 30 H 1.09003 * 109.46831 * 60.00243 * 4 2 1 31 31 H 1.09000 * 109.47184 * 179.97438 * 4 2 1 32 32 H 1.09002 * 113.61557 * 25.44468 * 10 8 6 33 33 H 1.09004 * 113.61501 * 254.53888 * 10 8 6 34 34 H 0.96998 * 120.00377 * 287.50245 * 13 11 10 35 35 H 1.08004 * 122.70566 * 180.02562 * 16 15 14 36 36 H 1.08996 * 109.47521 * 304.99735 * 18 17 16 37 37 H 0.96698 * 114.00419 * 179.97438 * 19 18 17 38 38 H 1.48497 * 110.00094 * 178.67890 * 20 18 17 39 39 H 1.48495 * 109.99952 * 300.00395 * 20 18 17 40 40 H 1.08997 * 113.61646 * 105.38683 * 22 8 6 41 41 H 1.09000 * 113.61527 * 334.47954 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6533 -1.9684 1.3380 7 8 0.9560 -2.5025 0.5083 8 6 2.1181 -2.7437 2.5438 9 1 3.1888 -2.6454 2.7232 10 6 1.2593 -2.5094 3.7977 11 6 1.4039 -4.0139 4.0817 12 1 0.4898 -4.4782 4.4519 13 7 2.5804 -4.3485 4.8879 14 6 2.4272 -4.7356 6.2101 15 7 1.2915 -4.8345 6.8285 16 6 1.3311 -5.2192 8.0917 17 6 2.5563 -5.4554 8.5615 18 6 2.8968 -5.9034 9.9594 19 8 2.3614 -7.2090 10.1850 20 14 4.7481 -5.9476 10.1639 21 16 3.7073 -5.1593 7.2611 22 6 1.6195 -4.1982 2.5706 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7490 -1.2491 30 1 1.6768 -0.2075 -2.1392 31 1 3.1301 -0.7209 -1.2494 32 1 0.2370 -2.2032 3.5759 33 1 1.7395 -1.8762 4.5438 34 1 3.4665 -4.2993 4.4966 35 1 0.4427 -5.3331 8.6952 36 1 2.4684 -5.2058 10.6791 37 1 2.5431 -7.5617 11.0668 38 1 5.0966 -6.3572 11.5481 39 1 5.3443 -6.8952 9.1884 40 1 2.3906 -4.9286 2.3258 41 1 0.6957 -4.3534 2.0134 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12862688_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:49:35 Heat of formation + Delta-G solvation = -36.220772 kcal Electronic energy + Delta-G solvation = -23576.265663 eV Core-core repulsion = 19972.009106 eV Total energy + Delta-G solvation = -3604.256557 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.11887 -40.84823 -39.92894 -37.99632 -37.67089 -35.24211 -34.86576 -31.35885 -28.37662 -28.36355 -28.11981 -26.92590 -26.43018 -24.59947 -23.31465 -21.48472 -20.78913 -20.06623 -19.31121 -18.62821 -18.40875 -17.59462 -17.32071 -17.06351 -16.63930 -16.08210 -15.88955 -15.71120 -15.41595 -15.29957 -14.92662 -14.58257 -14.44064 -14.01300 -13.88157 -13.61654 -13.50049 -13.13216 -13.07784 -12.90994 -12.87472 -12.78639 -12.43639 -12.42065 -12.30453 -12.12085 -12.01187 -11.70768 -11.35048 -11.18296 -10.81247 -10.68409 -10.24667 -10.15109 -8.74633 -5.06949 -0.04106 0.05819 0.70491 1.22197 1.22988 1.52601 1.68450 1.89485 2.04303 2.07422 3.17074 3.26429 3.34533 3.55019 3.61282 3.69077 3.74342 3.78205 3.91790 3.94666 3.99277 4.39246 4.41829 4.52495 4.55285 4.57817 4.61485 4.71216 4.73661 4.76732 4.79679 4.80778 4.85836 4.89483 4.91920 5.06014 5.21916 5.27348 5.29422 5.59582 5.82950 6.02234 6.40105 6.87111 7.02537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.349 6.349 6 C 0.474 3.526 7 O -0.500 6.500 8 C -0.115 4.115 9 H 0.122 0.878 10 C -0.132 4.132 11 C 0.139 3.861 12 H 0.115 0.885 13 N -0.677 5.677 14 C 0.324 3.676 15 N -0.546 5.546 16 C 0.118 3.882 17 C -0.259 4.259 18 C -0.019 4.019 19 O -0.535 6.535 20 Si 0.650 3.350 21 S 0.100 5.900 22 C -0.125 4.125 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.176 0.824 36 H 0.085 0.915 37 H 0.381 0.619 38 H -0.241 1.241 39 H -0.239 1.239 40 H 0.085 0.915 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 3.335 1.245 4.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.266 6.266 6 C 0.317 3.683 7 O -0.388 6.388 8 C -0.134 4.134 9 H 0.140 0.860 10 C -0.171 4.171 11 C 0.031 3.969 12 H 0.133 0.867 13 N -0.316 5.316 14 C -0.046 4.046 15 N -0.271 5.271 16 C -0.033 4.033 17 C -0.381 4.381 18 C -0.132 4.132 19 O -0.342 6.342 20 Si 0.549 3.451 21 S 0.350 5.650 22 C -0.164 4.164 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.253 0.747 35 H 0.193 0.807 36 H 0.103 0.897 37 H 0.229 0.771 38 H -0.165 1.165 39 H -0.162 1.162 40 H 0.103 0.897 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.570 2.889 0.069 4.592 hybrid contribution -0.993 -0.753 0.774 1.467 sum 2.576 2.136 0.842 3.451 Atomic orbital electron populations 1.22495 0.93871 1.04718 1.02977 1.22234 0.94503 0.92373 0.82881 1.21868 1.02294 0.92469 1.03275 1.22494 1.01713 1.03098 0.96750 1.86566 1.69575 1.25307 1.45186 1.23364 0.77379 0.80677 0.86858 1.90593 1.35218 1.70072 1.42891 1.22673 1.02530 0.95962 0.92253 0.85994 1.23433 1.00640 0.98057 0.95007 1.21810 0.89645 0.95188 0.90244 0.86671 1.43656 1.09220 1.72855 1.05874 1.23646 0.92762 0.97029 0.91149 1.66468 1.25246 1.25943 1.09471 1.21307 0.97221 0.95403 0.89339 1.24337 0.95127 1.19008 0.99644 1.23710 1.10075 0.86292 0.93111 1.86621 1.77798 1.31531 1.38275 0.95221 0.75481 0.91334 0.83081 1.83994 1.10228 1.66882 1.03906 1.23388 1.04022 0.93686 0.95261 0.91915 0.90874 0.89842 0.91406 0.90178 0.91376 0.89848 0.90857 0.91964 0.88343 0.89486 0.74737 0.80732 0.89746 0.77102 1.16478 1.16242 0.89685 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.15 8.37 37.16 0.31 0.16 16 2 C 0.12 0.10 1.13 -90.62 -0.10 0.00 16 3 C -0.14 0.12 8.85 37.16 0.33 0.45 16 4 C -0.18 -0.15 8.37 37.16 0.31 0.16 16 5 O -0.35 -0.59 9.89 -39.26 -0.39 -0.98 16 6 C 0.47 0.65 6.80 36.00 0.24 0.90 16 7 O -0.50 -1.72 11.40 -18.75 -0.21 -1.93 16 8 C -0.12 0.17 4.13 -90.96 -0.38 -0.21 16 9 H 0.12 -0.38 8.14 -51.93 -0.42 -0.81 16 10 C -0.13 0.19 7.43 -25.92 -0.19 0.00 16 11 C 0.14 -0.16 4.44 -67.14 -0.30 -0.46 16 12 H 0.12 0.04 7.67 -51.93 -0.40 -0.36 16 13 N -0.68 0.80 5.42 -55.01 -0.30 0.50 16 14 C 0.32 0.41 8.09 -87.68 -0.71 -0.30 16 15 N -0.55 -1.69 9.83 -15.21 -0.15 -1.84 16 16 C 0.12 0.28 11.24 -19.15 -0.22 0.07 16 17 C -0.26 -0.40 5.76 -36.03 -0.21 -0.61 16 18 C -0.02 0.00 2.98 36.00 0.11 0.11 16 19 O -0.53 -0.56 12.86 -35.23 -0.45 -1.01 16 20 Si 0.65 -0.46 31.07 -169.99 -5.28 -5.74 16 21 S 0.10 0.05 20.59 -107.50 -2.21 -2.16 16 22 C -0.13 0.21 7.15 -25.94 -0.19 0.02 16 23 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 24 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 25 H 0.08 0.21 5.89 -51.93 -0.31 -0.10 16 26 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 27 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 28 H 0.07 -0.06 8.14 -51.92 -0.42 -0.48 16 29 H 0.08 0.21 5.89 -51.93 -0.31 -0.09 16 30 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 31 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.10 -0.11 8.10 -51.93 -0.42 -0.53 16 33 H 0.09 -0.11 8.14 -51.93 -0.42 -0.54 16 34 H 0.41 -1.42 8.83 -40.82 -0.36 -1.78 16 35 H 0.18 0.17 8.06 -52.48 -0.42 -0.25 16 36 H 0.08 -0.17 7.96 -51.93 -0.41 -0.59 16 37 H 0.38 -1.19 8.74 45.56 0.40 -0.79 16 38 H -0.24 -0.16 7.11 56.52 0.40 0.24 16 39 H -0.24 -0.56 7.11 56.52 0.40 -0.16 16 40 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 41 H 0.11 -0.07 7.44 -51.93 -0.39 -0.45 16 LS Contribution 349.99 15.07 5.27 5.27 Total: 0.00 -6.92 349.99 -10.75 -17.66 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: -6.04 Total: -10.06 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -0.98 Total: 0.29 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -0.45 Total: -1.34 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -1.05 Total: -3.93 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: -5.28 Total: -5.74 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.21 Total: -2.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -6.92 -10.75 -17.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12862688_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.556 kcal (2) G-P(sol) polarization free energy of solvation -6.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds