Wall clock time and date at job start Mon Mar 8 2021 04:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47396 * 239.99628 * 2 1 3 5 5 O 1.45207 * 109.46616 * 119.99708 * 2 1 3 6 6 C 1.34230 * 117.00219 * 60.00530 * 5 2 1 7 7 O 1.20828 * 119.99616 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00193 * 179.97438 * 6 5 2 9 9 H 1.09006 * 112.85046 * 311.19144 * 8 6 5 10 10 C 1.53779 * 113.69216 * 82.46000 * 8 6 5 11 11 C 1.53784 * 87.08045 * 139.99356 * 10 8 6 12 12 H 1.09004 * 113.61451 * 220.02152 * 11 10 8 13 13 N 1.46496 * 113.61524 * 89.11591 * 11 10 8 14 14 C 1.38613 * 119.99889 * 107.50169 * 13 11 10 15 15 N 1.29690 * 124.95073 * 0.02635 * 14 13 11 16 16 C 1.32114 * 116.86485 * 179.97438 * 15 14 13 17 17 C 1.33324 * 114.58446 * 0.02562 * 16 15 14 18 18 C 1.50695 * 125.95384 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47291 * 64.99966 * 18 17 16 20 20 Si 1.86306 * 109.47280 * 184.99669 * 18 17 16 21 21 S 1.70962 * 124.94718 * 179.72056 * 14 13 11 22 22 C 1.53779 * 113.61244 * 179.97438 * 8 6 5 23 23 H 1.08997 * 109.47072 * 300.00390 * 1 2 3 24 24 H 1.08999 * 109.46454 * 59.99977 * 1 2 3 25 25 H 1.08998 * 109.46844 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47487 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47098 * 299.99831 * 3 2 1 28 28 H 1.09008 * 109.47001 * 59.99528 * 3 2 1 29 29 H 1.09001 * 109.46907 * 300.00388 * 4 2 1 30 30 H 1.09003 * 109.46831 * 60.00243 * 4 2 1 31 31 H 1.09000 * 109.47184 * 179.97438 * 4 2 1 32 32 H 1.09002 * 113.61557 * 25.44468 * 10 8 6 33 33 H 1.09004 * 113.61501 * 254.53888 * 10 8 6 34 34 H 0.96998 * 120.00377 * 287.50245 * 13 11 10 35 35 H 1.08004 * 122.70566 * 180.02562 * 16 15 14 36 36 H 1.08996 * 109.47521 * 304.99735 * 18 17 16 37 37 H 0.96698 * 114.00419 * 179.97438 * 19 18 17 38 38 H 1.48497 * 110.00094 * 178.67890 * 20 18 17 39 39 H 1.48495 * 109.99952 * 300.00395 * 20 18 17 40 40 H 1.08997 * 113.61646 * 105.38683 * 22 8 6 41 41 H 1.09000 * 113.61527 * 334.47954 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6533 -1.9684 1.3380 7 8 0.9560 -2.5025 0.5083 8 6 2.1181 -2.7437 2.5438 9 1 3.1888 -2.6454 2.7232 10 6 1.2593 -2.5094 3.7977 11 6 1.4039 -4.0139 4.0817 12 1 0.4898 -4.4782 4.4519 13 7 2.5804 -4.3485 4.8879 14 6 2.4272 -4.7356 6.2101 15 7 1.2915 -4.8345 6.8285 16 6 1.3311 -5.2192 8.0917 17 6 2.5563 -5.4554 8.5615 18 6 2.8968 -5.9034 9.9594 19 8 2.3614 -7.2090 10.1850 20 14 4.7481 -5.9476 10.1639 21 16 3.7073 -5.1593 7.2611 22 6 1.6195 -4.1982 2.5706 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7490 -1.2491 30 1 1.6768 -0.2075 -2.1392 31 1 3.1301 -0.7209 -1.2494 32 1 0.2370 -2.2032 3.5759 33 1 1.7395 -1.8762 4.5438 34 1 3.4665 -4.2993 4.4966 35 1 0.4427 -5.3331 8.6952 36 1 2.4684 -5.2058 10.6791 37 1 2.5431 -7.5617 11.0668 38 1 5.0966 -6.3572 11.5481 39 1 5.3443 -6.8952 9.1884 40 1 2.3906 -4.9286 2.3258 41 1 0.6957 -4.3534 2.0134 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12862688_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:49:34 Heat of formation + Delta-G solvation = -32.421379 kcal Electronic energy + Delta-G solvation = -23576.100909 eV Core-core repulsion = 19972.009106 eV Total energy + Delta-G solvation = -3604.091803 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17391 -40.89291 -39.93792 -38.03017 -37.74684 -35.27047 -34.88632 -31.39606 -28.42736 -28.34518 -28.12044 -26.84458 -26.45549 -24.63766 -23.33696 -21.48863 -20.83391 -20.10289 -19.30715 -18.63834 -18.44018 -17.65751 -17.36019 -17.10615 -16.61372 -16.12135 -15.88832 -15.75974 -15.43718 -15.34956 -14.93542 -14.61621 -14.45933 -14.04577 -13.86888 -13.55144 -13.45281 -13.13763 -13.06515 -12.95799 -12.89951 -12.81433 -12.51559 -12.47204 -12.37452 -12.12267 -11.95461 -11.65389 -11.42601 -11.17475 -10.89078 -10.71145 -10.27984 -10.20982 -8.76198 -5.02248 -0.09627 0.01812 0.65439 1.14107 1.25052 1.54353 1.67528 1.89674 1.96069 2.11475 3.23498 3.33410 3.44025 3.55881 3.65871 3.69682 3.74144 3.75761 3.91610 3.96571 4.06490 4.47695 4.49464 4.54151 4.55362 4.63010 4.67544 4.71588 4.73703 4.76882 4.80445 4.83483 4.89731 4.92049 4.95784 5.08636 5.20021 5.21159 5.24702 5.54639 5.81828 6.14108 6.60180 6.78644 6.99936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.471 3.529 7 O -0.525 6.525 8 C -0.108 4.108 9 H 0.145 0.855 10 C -0.126 4.126 11 C 0.143 3.857 12 H 0.099 0.901 13 N -0.666 5.666 14 C 0.317 3.683 15 N -0.574 5.574 16 C 0.102 3.898 17 C -0.270 4.270 18 C -0.027 4.027 19 O -0.557 6.557 20 Si 0.717 3.283 21 S 0.119 5.881 22 C -0.118 4.118 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.427 0.573 35 H 0.180 0.820 36 H 0.108 0.892 37 H 0.397 0.603 38 H -0.257 1.257 39 H -0.282 1.282 40 H 0.097 0.903 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 4.088 1.496 5.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.315 3.685 7 O -0.414 6.414 8 C -0.127 4.127 9 H 0.163 0.837 10 C -0.165 4.165 11 C 0.035 3.965 12 H 0.117 0.883 13 N -0.307 5.307 14 C -0.053 4.053 15 N -0.300 5.300 16 C -0.048 4.048 17 C -0.392 4.392 18 C -0.139 4.139 19 O -0.367 6.367 20 Si 0.620 3.380 21 S 0.369 5.631 22 C -0.157 4.157 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.267 0.733 35 H 0.197 0.803 36 H 0.125 0.875 37 H 0.248 0.752 38 H -0.182 1.182 39 H -0.209 1.209 40 H 0.115 0.885 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.460 3.659 0.328 5.779 hybrid contribution -1.273 -1.023 0.674 1.767 sum 3.188 2.636 1.002 4.256 Atomic orbital electron populations 1.22462 0.94096 1.03588 1.03644 1.22425 0.94477 0.93301 0.82666 1.21880 1.02435 0.91263 1.04017 1.22458 1.01842 1.02068 0.97372 1.86570 1.69614 1.25498 1.45582 1.23885 0.76803 0.80610 0.87209 1.90590 1.36323 1.70478 1.44008 1.22780 1.03675 0.95367 0.90872 0.83723 1.23369 1.00437 0.97733 0.94971 1.21688 0.89180 0.95292 0.90364 0.88296 1.43664 1.09837 1.72091 1.05066 1.23846 0.92788 0.96826 0.91881 1.66467 1.26345 1.27151 1.10065 1.21467 0.97886 0.96020 0.89467 1.24629 0.95252 1.18748 1.00599 1.23936 1.10678 0.86435 0.92818 1.86573 1.78169 1.32126 1.39875 0.94458 0.73679 0.89692 0.80175 1.83865 1.09400 1.66544 1.03302 1.23305 1.03863 0.94002 0.94488 0.91774 0.89677 0.91806 0.91164 0.88807 0.91282 0.91819 0.89678 0.91656 0.88924 0.89190 0.73314 0.80279 0.87476 0.75221 1.18188 1.20877 0.88477 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.39 8.37 71.98 0.60 0.22 16 2 C 0.11 0.19 1.13 -10.79 -0.01 0.18 16 3 C -0.14 0.33 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.34 8.37 71.98 0.60 0.27 16 5 O -0.36 -1.27 9.89 -51.42 -0.51 -1.78 16 6 C 0.47 1.55 6.80 71.23 0.48 2.03 16 7 O -0.52 -4.28 11.40 21.96 0.25 -4.03 16 8 C -0.11 0.34 4.13 -11.02 -0.05 0.29 16 9 H 0.15 -1.11 8.14 -2.38 -0.02 -1.13 16 10 C -0.13 0.34 7.43 31.12 0.23 0.57 16 11 C 0.14 -0.28 4.44 45.51 0.20 -0.08 16 12 H 0.10 0.19 7.67 -2.39 -0.02 0.18 16 13 N -0.67 1.71 5.42 -327.95 -1.78 -0.07 16 14 C 0.32 0.87 8.09 179.32 1.45 2.32 16 15 N -0.57 -3.98 9.83 -202.03 -1.99 -5.97 16 16 C 0.10 0.55 11.24 83.54 0.94 1.49 16 17 C -0.27 -0.87 5.76 24.57 0.14 -0.73 16 18 C -0.03 0.01 2.98 71.23 0.21 0.23 16 19 O -0.56 -1.11 12.86 -148.98 -1.92 -3.02 16 20 Si 0.72 -1.20 31.07 68.60 2.13 0.94 16 21 S 0.12 0.11 20.59 -56.49 -1.16 -1.05 16 22 C -0.12 0.37 7.15 31.11 0.22 0.59 16 23 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 24 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H 0.06 0.41 5.89 -2.39 -0.01 0.40 16 26 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.06 0.40 5.89 -2.39 -0.01 0.38 16 30 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.09 -0.12 8.10 -2.39 -0.02 -0.14 16 33 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.43 -3.31 8.83 -92.71 -0.82 -4.13 16 35 H 0.18 0.53 8.06 -2.91 -0.02 0.50 16 36 H 0.11 -0.56 7.96 -2.39 -0.02 -0.58 16 37 H 0.40 -2.60 8.74 -74.06 -0.65 -3.25 16 38 H -0.26 -0.22 7.11 99.48 0.71 0.49 16 39 H -0.28 -1.56 7.11 99.48 0.71 -0.85 16 40 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.10 0.00 7.44 -2.39 -0.02 -0.02 16 Total: 0.00 -16.90 349.99 0.33 -16.57 By element: Atomic # 1 Polarization: -9.55 SS G_CDS: -0.37 Total: -9.93 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.67 Total: 8.34 kcal Atomic # 7 Polarization: -2.27 SS G_CDS: -3.76 Total: -6.04 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -2.17 Total: -8.83 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: 2.13 Total: 0.94 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.16 Total: -1.05 kcal Total: -16.90 0.33 -16.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12862688_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.849 kcal (2) G-P(sol) polarization free energy of solvation -16.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds