Wall clock time and date at job start Mon Mar 8 2021 04:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33326 * 125.95025 * 2 1 4 4 C 1.50702 * 122.71194 * 0.23657 * 3 2 1 5 5 O 1.42901 * 109.46818 * 44.27133 * 4 3 2 6 6 Si 1.86299 * 109.46985 * 164.26775 * 4 3 2 7 7 N 1.32127 * 114.57855 * 179.97438 * 3 2 1 8 8 C 1.29686 * 116.86720 * 359.97438 * 7 3 2 9 9 N 1.38599 * 124.95266 * 180.02562 * 8 7 3 10 10 C 1.46499 * 120.00591 * 180.02562 * 9 8 7 11 11 H 1.09009 * 112.84699 * 23.80574 * 10 9 8 12 12 C 1.53776 * 113.61817 * 155.00144 * 10 9 8 13 13 C 1.53782 * 87.08354 * 89.11747 * 12 10 9 14 14 H 1.08997 * 113.61629 * 270.89025 * 13 12 10 15 15 C 1.50694 * 113.61461 * 139.97761 * 13 12 10 16 16 O 1.20824 * 120.00203 * 0.02562 * 15 13 12 17 17 O 1.34234 * 120.00192 * 179.97438 * 15 13 12 18 18 C 1.45194 * 116.99999 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47098 * 60.00470 * 18 17 15 20 20 C 1.53005 * 109.46798 * 180.02562 * 18 17 15 21 21 C 1.52994 * 109.47662 * 300.00079 * 18 17 15 22 22 C 1.53784 * 113.61572 * 252.50472 * 10 9 8 23 23 S 1.70965 * 110.09942 * 0.02562 * 8 7 3 24 24 H 1.08996 * 109.47671 * 84.34597 * 1 2 3 25 25 H 1.09000 * 109.47007 * 204.34940 * 1 2 3 26 26 H 1.09000 * 109.47058 * 324.34610 * 1 2 3 27 27 H 1.08991 * 109.47085 * 284.27197 * 4 3 2 28 28 H 0.96701 * 113.99942 * 60.00270 * 5 4 3 29 29 H 1.48507 * 109.99875 * 58.68579 * 6 4 3 30 30 H 1.48500 * 109.99765 * 179.97438 * 6 4 3 31 31 H 0.97002 * 120.00320 * 0.02562 * 9 8 7 32 32 H 1.09000 * 113.61390 * 203.67074 * 12 10 9 33 33 H 1.09004 * 113.61265 * 334.56658 * 12 10 9 34 34 H 1.09004 * 109.47179 * 59.99847 * 19 18 17 35 35 H 1.09002 * 109.47072 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.47105 * 299.99375 * 19 18 17 37 37 H 1.08995 * 109.47206 * 60.00145 * 20 18 17 38 38 H 1.09002 * 109.47079 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.47267 * 300.00023 * 20 18 17 40 40 H 1.09003 * 109.47057 * 59.99747 * 21 18 17 41 41 H 1.08995 * 109.47651 * 180.02562 * 21 18 17 42 42 H 1.09004 * 109.47058 * 300.00567 * 21 18 17 43 43 H 1.08996 * 113.61330 * 25.42500 * 22 10 9 44 44 H 1.09004 * 113.61538 * 156.33519 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0052 5 8 0.6726 2.5733 0.9495 6 14 3.0918 3.6754 0.4799 7 7 3.5850 0.8188 0.0005 8 6 3.9315 -0.4309 0.0015 9 7 5.2383 -0.8926 0.0027 10 6 5.5065 -2.3328 0.0032 11 1 4.6808 -2.9173 -0.4029 12 6 6.8752 -2.7048 -0.5910 13 6 7.4468 -2.5440 0.8275 14 1 7.7777 -1.5301 1.0526 15 6 8.4711 -3.5890 1.1876 16 8 8.7685 -4.4443 0.3878 17 8 9.0539 -3.5690 2.3967 18 6 10.0316 -4.6059 2.6744 19 6 11.1769 -4.5106 1.6645 20 6 10.5824 -4.4214 4.0899 21 6 9.3653 -5.9786 2.5619 22 6 6.0346 -2.8607 1.3476 23 16 2.5413 -1.4260 0.0011 24 1 -0.3634 0.1012 -1.0226 25 1 -0.3633 -0.9363 0.4237 26 1 -0.3633 0.8350 0.5990 27 1 1.3699 2.7316 -0.9888 28 1 0.9314 2.3647 1.8576 29 1 4.2230 3.5685 -0.4764 30 1 2.5639 5.0634 0.4881 31 1 5.9755 -0.2621 0.0032 32 1 6.9243 -3.7262 -0.9684 33 1 7.2568 -1.9713 -1.3013 34 1 11.6516 -3.5327 1.7447 35 1 11.9111 -5.2887 1.8733 36 1 10.7842 -4.6423 0.6563 37 1 9.7663 -4.4896 4.8091 38 1 11.3167 -5.1996 4.2983 39 1 11.0571 -3.4435 4.1705 40 1 8.9725 -6.1102 1.5537 41 1 10.0991 -6.7569 2.7708 42 1 8.5493 -6.0464 3.2814 43 1 5.7376 -2.2530 2.2023 44 1 5.8540 -3.9248 1.5002 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12862688_15704122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:49:37 Heat of formation + Delta-G solvation = -36.927508 kcal Electronic energy + Delta-G solvation = -25725.144615 eV Core-core repulsion = 21965.319793 eV Total energy + Delta-G solvation = -3759.824822 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19091 -41.11095 -40.23835 -38.00671 -37.58672 -35.31631 -34.93397 -32.52693 -29.35233 -28.42804 -28.34714 -27.72146 -26.88850 -25.64454 -24.42425 -23.44731 -21.35057 -20.53298 -20.43458 -18.91358 -18.53310 -17.85603 -17.63478 -17.21027 -17.07864 -16.67874 -16.48942 -15.89312 -15.67559 -15.43286 -15.33434 -14.91830 -14.60099 -14.38746 -14.18407 -13.86709 -13.59769 -13.55913 -13.45909 -13.34519 -13.13513 -13.08635 -12.95825 -12.90338 -12.73203 -12.51771 -12.35189 -12.13280 -12.05217 -11.93350 -11.69627 -11.42922 -11.06822 -10.85474 -10.63768 -10.36308 -10.05291 -8.67776 -4.90782 -0.03236 0.14436 0.73406 1.12917 1.36106 1.66444 1.72445 1.80542 1.85254 2.08957 3.17704 3.26398 3.40340 3.53596 3.56279 3.60688 3.70567 3.75314 3.91103 4.01899 4.14874 4.29477 4.36610 4.47892 4.53100 4.55493 4.56193 4.63640 4.71513 4.74549 4.79166 4.80898 4.83240 4.87224 4.88232 4.91394 4.98109 5.08595 5.14805 5.20408 5.24320 5.36111 5.54100 5.63175 6.27739 6.67489 6.77597 6.92344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.240 4.240 3 C 0.050 3.950 4 C -0.031 4.031 5 O -0.539 6.539 6 Si 0.795 3.205 7 N -0.565 5.565 8 C 0.311 3.689 9 N -0.671 5.671 10 C 0.132 3.868 11 H 0.109 0.891 12 C -0.116 4.116 13 C -0.111 4.111 14 H 0.139 0.861 15 C 0.471 3.529 16 O -0.523 6.523 17 O -0.355 6.355 18 C 0.107 3.893 19 C -0.181 4.181 20 C -0.140 4.140 21 C -0.180 4.180 22 C -0.127 4.127 23 S 0.125 5.875 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.395 0.605 29 H -0.305 1.305 30 H -0.298 1.298 31 H 0.417 0.583 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 -2.955 4.260 5.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.363 4.363 3 C -0.080 4.080 4 C -0.145 4.145 5 O -0.346 6.346 6 Si 0.702 3.298 7 N -0.293 5.293 8 C -0.060 4.060 9 N -0.311 5.311 10 C 0.025 3.975 11 H 0.127 0.873 12 C -0.154 4.154 13 C -0.130 4.130 14 H 0.157 0.843 15 C 0.316 3.684 16 O -0.413 6.413 17 O -0.273 6.273 18 C 0.072 3.928 19 C -0.238 4.238 20 C -0.197 4.197 21 C -0.237 4.237 22 C -0.166 4.166 23 S 0.374 5.626 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.246 0.754 29 H -0.233 1.233 30 H -0.226 1.226 31 H 0.257 0.743 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.190 -3.274 3.292 4.793 hybrid contribution 0.201 0.601 -0.783 1.007 sum 1.391 -2.673 2.509 3.921 Atomic orbital electron populations 1.20368 0.85780 1.04276 1.03132 1.25425 1.02050 0.93118 1.15733 1.20181 0.86668 0.97690 1.03415 1.24477 0.98147 0.95481 0.96357 1.86424 1.34995 1.91737 1.21488 0.92911 0.74139 0.73026 0.89697 1.65876 1.17720 1.17559 1.28123 1.23408 0.92507 0.91535 0.98529 1.43635 1.01420 1.06532 1.79512 1.21900 0.98785 0.79455 0.97319 0.87348 1.23295 0.92765 1.04748 0.94612 1.22750 0.92430 0.98460 0.99377 0.84332 1.23833 0.80211 0.85103 0.79292 1.90591 1.61614 1.38048 1.51004 1.86571 1.52816 1.52750 1.35125 1.22415 0.86959 0.86130 0.97318 1.22464 0.98066 1.03334 0.99958 1.21883 1.01817 1.03831 0.92124 1.22458 1.02070 0.95858 1.03340 1.23459 0.91221 1.03443 0.98491 1.83876 0.95603 1.09638 1.73467 0.91560 0.91040 0.87923 0.86941 0.75445 1.23250 1.22622 0.74335 0.87163 0.88837 0.91858 0.89684 0.91741 0.91161 0.88838 0.91345 0.91647 0.89755 0.91594 0.88724 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.04 9.97 71.23 0.71 0.75 16 2 C -0.24 -0.56 6.49 24.57 0.16 -0.41 16 3 C 0.05 0.20 6.00 41.40 0.25 0.45 16 4 C -0.03 -0.07 2.74 71.24 0.20 0.13 16 5 O -0.54 0.25 10.22 -148.98 -1.52 -1.27 16 6 Si 0.79 2.31 31.88 68.60 2.19 4.49 16 7 N -0.57 -2.94 8.61 -189.87 -1.63 -4.58 16 8 C 0.31 0.54 8.24 179.33 1.48 2.01 16 9 N -0.67 2.12 5.42 -327.90 -1.78 0.34 16 10 C 0.13 -0.78 4.31 45.52 0.20 -0.59 16 11 H 0.11 -0.68 7.06 -2.38 -0.02 -0.70 16 12 C -0.12 0.63 7.15 31.12 0.22 0.85 16 13 C -0.11 0.51 4.14 -11.01 -0.05 0.47 16 14 H 0.14 -1.02 8.14 -2.39 -0.02 -1.04 16 15 C 0.47 0.82 6.79 71.23 0.48 1.30 16 16 O -0.52 -3.32 11.40 21.97 0.25 -3.07 16 17 O -0.36 -0.87 9.89 -51.45 -0.51 -1.38 16 18 C 0.11 0.09 1.13 -10.80 -0.01 0.08 16 19 C -0.18 -0.23 8.37 71.98 0.60 0.37 16 20 C -0.14 0.42 8.85 71.98 0.64 1.05 16 21 C -0.18 -0.12 8.37 71.98 0.60 0.49 16 22 C -0.13 0.81 7.43 31.12 0.23 1.04 16 23 S 0.12 0.00 21.69 -56.49 -1.23 -1.22 16 24 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 25 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.10 -0.08 5.67 -2.39 -0.01 -0.10 16 27 H 0.11 0.35 7.96 -2.39 -0.02 0.33 16 28 H 0.40 -3.03 8.70 -74.06 -0.64 -3.67 16 29 H -0.30 -3.32 7.11 99.48 0.71 -2.62 16 30 H -0.30 -2.44 7.11 99.48 0.71 -1.74 16 31 H 0.42 -1.89 8.82 -92.71 -0.82 -2.71 16 32 H 0.11 -0.39 7.44 -2.39 -0.02 -0.41 16 33 H 0.09 -0.57 8.14 -2.38 -0.02 -0.59 16 34 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.06 0.35 5.89 -2.39 -0.01 0.34 16 37 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.09 -0.54 8.14 -2.39 -0.02 -0.55 16 39 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.06 0.30 5.89 -2.39 -0.01 0.29 16 41 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 44 H 0.10 -0.69 8.09 -2.39 -0.02 -0.71 16 Total: 0.00 -15.28 366.52 1.08 -14.20 By element: Atomic # 1 Polarization: -15.11 SS G_CDS: -0.40 Total: -15.51 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.71 Total: 7.99 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -3.41 Total: -4.24 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -1.78 Total: -5.72 kcal Atomic # 14 Polarization: 2.31 SS G_CDS: 2.19 Total: 4.49 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.23 Total: -1.22 kcal Total: -15.28 1.08 -14.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12862688_15704122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.730 kcal (2) G-P(sol) polarization free energy of solvation -15.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds