Wall clock time and date at job start Mon Mar 8 2021 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08993 * 109.46871 * 109.23250 * 3 2 1 5 5 C 1.52999 * 109.46670 * 229.23698 * 3 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47127 * 299.99539 * 6 5 3 8 8 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 9 9 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 10 10 C 1.39008 * 119.99815 * 155.00205 * 9 7 6 11 11 N 1.32400 * 119.70645 * 179.73321 * 10 9 7 12 12 C 1.31969 * 121.62304 * 179.71132 * 11 10 9 13 13 C 1.38021 * 120.85563 * 0.55959 * 12 11 10 14 14 C 1.50699 * 120.33785 * 179.74708 * 13 12 11 15 15 O 1.42900 * 109.47108 * 244.98039 * 14 13 12 16 16 Si 1.86303 * 109.47001 * 4.97797 * 14 13 12 17 17 C 1.38885 * 119.32992 * 359.72868 * 13 12 11 18 18 C 1.38299 * 118.50817 * 359.97438 * 17 13 12 19 19 C 1.53002 * 109.46817 * 60.00361 * 7 6 5 20 20 C 1.52996 * 109.46972 * 299.99733 * 19 7 6 21 21 H 4.18740 * 15.03939 * 0.02562 * 4 2 1 22 22 H 1.08993 * 109.47839 * 60.00146 * 5 3 2 23 23 H 1.09000 * 109.47160 * 299.99708 * 5 3 2 24 24 H 1.09001 * 109.46801 * 59.99811 * 6 5 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 6 5 3 26 26 H 0.97001 * 120.00575 * 335.00735 * 9 7 6 27 27 H 1.07993 * 119.57400 * 180.28551 * 12 11 10 28 28 H 1.09001 * 109.47369 * 124.97843 * 14 13 12 29 29 H 0.96698 * 114.00400 * 59.99961 * 15 14 13 30 30 H 1.48498 * 110.00015 * 180.02562 * 16 14 13 31 31 H 1.48500 * 109.99881 * 301.31771 * 16 14 13 32 32 H 1.08000 * 120.75106 * 180.02562 * 17 13 12 33 33 H 1.07991 * 120.45748 * 180.02562 * 18 17 13 34 34 H 1.08996 * 109.47407 * 60.00219 * 19 7 6 35 35 H 1.09000 * 109.46986 * 179.97438 * 19 7 6 36 36 H 1.09001 * 109.46993 * 180.02562 * 20 19 7 37 37 H 1.09000 * 109.47380 * 299.99696 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0092 0.3393 -0.9703 5 6 3.1555 0.9428 1.0926 6 6 4.6856 0.9439 1.0922 7 6 5.1968 -0.4728 1.3613 8 1 4.8339 -0.8117 2.3316 9 7 6.6617 -0.4718 1.3603 10 6 7.3579 -1.4481 2.0634 11 7 8.6819 -1.4448 2.0542 12 6 9.3806 -2.3501 2.7128 13 6 8.7504 -3.3463 3.4306 14 6 9.5599 -4.3775 4.1738 15 8 9.3354 -5.6655 3.5971 16 14 11.3694 -3.9505 4.0545 17 6 7.3625 -3.3887 3.4613 18 6 6.6571 -2.4232 2.7664 19 6 4.6872 -1.4149 0.2687 20 6 3.1572 -1.4161 0.2691 21 1 -1.0500 0.0004 0.0004 22 1 2.7924 0.6041 2.0629 23 1 2.7918 1.9522 0.9006 24 1 5.0484 1.2829 0.1218 25 1 5.0486 1.6154 1.8702 26 1 7.1460 0.2102 0.8690 27 1 10.4596 -2.3135 2.6863 28 1 9.2580 -4.3907 5.2211 29 1 9.5822 -5.7273 2.6642 30 1 12.1786 -4.9603 4.7830 31 1 11.7860 -3.8982 2.6301 32 1 6.8456 -4.1579 4.0159 33 1 5.5772 -2.4261 2.7692 34 1 5.0500 -1.0760 -0.7016 35 1 5.0517 -2.4241 0.4602 36 1 2.7942 -2.0876 -0.5089 37 1 2.7944 -1.7551 1.2394 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12865464_13915762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:39:29 Heat of formation + Delta-G solvation = 55.728415 kcal Electronic energy + Delta-G solvation = -18765.418215 eV Core-core repulsion = 15896.210109 eV Total energy + Delta-G solvation = -2869.208106 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49952 -40.12382 -38.03624 -36.47884 -33.95235 -33.27098 -32.05737 -31.57480 -29.68121 -26.32296 -24.93167 -23.97229 -23.73127 -22.33568 -21.21535 -19.13290 -18.67060 -18.52472 -17.70289 -16.49727 -16.46614 -16.25276 -15.83206 -15.72071 -15.57744 -15.15031 -14.91351 -14.29121 -14.17580 -14.02066 -13.91589 -13.40069 -13.31412 -12.87357 -12.48286 -12.31426 -12.23231 -12.11988 -11.93436 -11.73336 -11.17819 -11.02332 -10.87923 -10.71959 -10.50760 -10.32859 -8.69720 -4.93620 0.27473 0.45398 1.32323 1.61099 1.87816 1.90693 1.98792 2.04510 2.87701 3.29217 3.42574 3.46157 3.59905 3.64420 3.79907 3.91570 3.98587 4.03462 4.07523 4.09716 4.23756 4.26687 4.31023 4.37120 4.55356 4.58645 4.61832 4.77711 4.82055 4.91750 4.96327 4.98508 5.03900 5.13245 5.15016 5.24694 5.34808 5.54524 6.01460 6.44113 6.54929 6.69388 7.18910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C 0.020 3.980 4 H 0.093 0.907 5 C -0.106 4.106 6 C -0.126 4.126 7 C 0.153 3.847 8 H 0.085 0.915 9 N -0.719 5.719 10 C 0.410 3.590 11 N -0.541 5.541 12 C 0.155 3.845 13 C -0.235 4.235 14 C -0.059 4.059 15 O -0.532 6.532 16 Si 0.680 3.320 17 C -0.005 4.005 18 C -0.240 4.240 19 C -0.136 4.136 20 C -0.108 4.108 21 H 0.217 0.783 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.405 0.595 27 H 0.155 0.845 28 H 0.116 0.884 29 H 0.375 0.625 30 H -0.256 1.256 31 H -0.259 1.259 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 2.407 0.287 2.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C 0.002 3.998 4 H 0.111 0.889 5 C -0.144 4.144 6 C -0.164 4.164 7 C 0.048 3.952 8 H 0.103 0.897 9 N -0.350 5.350 10 C 0.174 3.826 11 N -0.257 5.257 12 C -0.003 4.003 13 C -0.240 4.240 14 C -0.170 4.170 15 O -0.338 6.338 16 Si 0.581 3.419 17 C -0.031 4.031 18 C -0.265 4.265 19 C -0.174 4.174 20 C -0.146 4.146 21 H 0.234 0.766 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.241 0.759 27 H 0.171 0.829 28 H 0.134 0.866 29 H 0.223 0.777 30 H -0.181 1.181 31 H -0.184 1.184 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.905 2.659 0.163 2.814 hybrid contribution -0.965 -1.099 -0.683 1.614 sum -1.870 1.560 -0.520 2.490 Atomic orbital electron populations 1.24996 0.96023 1.00245 1.00606 1.22985 0.94220 1.00837 1.00710 1.18363 0.84495 0.96578 1.00406 0.88883 1.21501 0.94197 0.99887 0.98851 1.21797 0.95723 0.95595 1.03253 1.21065 0.78507 0.96142 0.99514 0.89746 1.44610 1.05120 1.30804 1.54486 1.18408 0.88147 0.87610 0.88398 1.67169 1.06147 1.28005 1.24409 1.22263 0.99155 0.88672 0.90178 1.20909 0.95437 1.01344 1.06296 1.24752 1.09530 0.83190 0.99502 1.86593 1.86919 1.30459 1.29857 0.95111 0.74616 0.89162 0.83005 1.21198 0.93013 0.95392 0.93489 1.21496 1.01053 0.98701 1.05227 1.22069 0.95147 1.00455 0.99777 1.21525 0.94703 0.95416 1.02981 0.76601 0.91031 0.90689 0.90802 0.90485 0.75863 0.82856 0.86626 0.77750 1.18109 1.18351 0.84730 0.84861 0.91033 0.91026 0.90961 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.11 19.25 29.55 0.57 0.46 16 2 C -0.19 -0.16 12.56 -37.12 -0.47 -0.63 16 3 C 0.02 -0.03 2.56 -93.41 -0.24 -0.26 16 4 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 5 C -0.11 0.23 5.16 -26.73 -0.14 0.10 16 6 C -0.13 0.36 5.39 -26.73 -0.14 0.22 16 7 C 0.15 -0.32 2.14 -67.93 -0.15 -0.47 16 8 H 0.08 -0.17 6.45 -51.93 -0.33 -0.50 16 9 N -0.72 0.39 5.24 -53.93 -0.28 0.11 16 10 C 0.41 0.63 7.63 -155.01 -1.18 -0.56 16 11 N -0.54 -1.48 10.39 -12.44 -0.13 -1.61 16 12 C 0.15 0.20 9.84 -17.57 -0.17 0.03 16 13 C -0.23 -0.15 5.36 -104.46 -0.56 -0.71 16 14 C -0.06 0.01 2.82 36.01 0.10 0.11 16 15 O -0.53 -0.72 12.84 -35.23 -0.45 -1.17 16 16 Si 0.68 -0.53 29.91 -169.99 -5.08 -5.61 16 17 C -0.01 0.00 9.83 -39.32 -0.39 -0.39 16 18 C -0.24 -0.15 8.83 -39.22 -0.35 -0.49 16 19 C -0.14 0.27 5.42 -26.73 -0.14 0.12 16 20 C -0.11 0.19 5.16 -26.73 -0.14 0.05 16 21 H 0.22 -0.50 7.80 -54.09 -0.42 -0.92 16 22 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 23 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 24 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 25 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 26 H 0.41 -0.39 8.73 -40.82 -0.36 -0.75 16 27 H 0.15 -0.07 4.85 -52.49 -0.25 -0.32 16 28 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.37 -0.48 8.70 45.56 0.40 -0.08 16 30 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 31 H -0.26 -0.29 7.01 56.52 0.40 0.10 16 32 H 0.13 -0.07 8.06 -52.49 -0.42 -0.49 16 33 H 0.13 -0.13 6.08 -52.49 -0.32 -0.44 16 34 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.07 -0.08 7.66 -51.93 -0.40 -0.48 16 36 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 37 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 LS Contribution 305.88 15.07 4.61 4.61 Total: 0.00 -5.49 305.88 -9.84 -15.34 By element: Atomic # 1 Polarization: -4.13 SS G_CDS: -5.11 Total: -9.24 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.39 Total: -2.43 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -0.41 Total: -1.50 kcal Atomic # 8 Polarization: -0.72 SS G_CDS: -0.45 Total: -1.17 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: -5.08 Total: -5.61 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -5.49 -9.84 -15.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12865464_13915762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.065 kcal (2) G-P(sol) polarization free energy of solvation -5.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds