Wall clock time and date at job start Mon Mar 8 2021 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08993 * 109.46871 * 109.23250 * 3 2 1 5 5 C 1.52999 * 109.46670 * 229.23698 * 3 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47127 * 299.99539 * 6 5 3 8 8 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 9 9 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 10 10 C 1.39008 * 119.99815 * 155.00205 * 9 7 6 11 11 N 1.32400 * 119.70645 * 179.73321 * 10 9 7 12 12 C 1.31969 * 121.62304 * 179.71132 * 11 10 9 13 13 C 1.38021 * 120.85563 * 0.55959 * 12 11 10 14 14 C 1.50699 * 120.33785 * 179.74708 * 13 12 11 15 15 O 1.42900 * 109.47108 * 244.98039 * 14 13 12 16 16 Si 1.86303 * 109.47001 * 4.97797 * 14 13 12 17 17 C 1.38885 * 119.32992 * 359.72868 * 13 12 11 18 18 C 1.38299 * 118.50817 * 359.97438 * 17 13 12 19 19 C 1.53002 * 109.46817 * 60.00361 * 7 6 5 20 20 C 1.52996 * 109.46972 * 299.99733 * 19 7 6 21 21 H 4.18740 * 15.03939 * 0.02562 * 4 2 1 22 22 H 1.08993 * 109.47839 * 60.00146 * 5 3 2 23 23 H 1.09000 * 109.47160 * 299.99708 * 5 3 2 24 24 H 1.09001 * 109.46801 * 59.99811 * 6 5 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 6 5 3 26 26 H 0.97001 * 120.00575 * 335.00735 * 9 7 6 27 27 H 1.07993 * 119.57400 * 180.28551 * 12 11 10 28 28 H 1.09001 * 109.47369 * 124.97843 * 14 13 12 29 29 H 0.96698 * 114.00400 * 59.99961 * 15 14 13 30 30 H 1.48498 * 110.00015 * 180.02562 * 16 14 13 31 31 H 1.48500 * 109.99881 * 301.31771 * 16 14 13 32 32 H 1.08000 * 120.75106 * 180.02562 * 17 13 12 33 33 H 1.07991 * 120.45748 * 180.02562 * 18 17 13 34 34 H 1.08996 * 109.47407 * 60.00219 * 19 7 6 35 35 H 1.09000 * 109.46986 * 179.97438 * 19 7 6 36 36 H 1.09001 * 109.46993 * 180.02562 * 20 19 7 37 37 H 1.09000 * 109.47380 * 299.99696 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0092 0.3393 -0.9703 5 6 3.1555 0.9428 1.0926 6 6 4.6856 0.9439 1.0922 7 6 5.1968 -0.4728 1.3613 8 1 4.8339 -0.8117 2.3316 9 7 6.6617 -0.4718 1.3603 10 6 7.3579 -1.4481 2.0634 11 7 8.6819 -1.4448 2.0542 12 6 9.3806 -2.3501 2.7128 13 6 8.7504 -3.3463 3.4306 14 6 9.5599 -4.3775 4.1738 15 8 9.3354 -5.6655 3.5971 16 14 11.3694 -3.9505 4.0545 17 6 7.3625 -3.3887 3.4613 18 6 6.6571 -2.4232 2.7664 19 6 4.6872 -1.4149 0.2687 20 6 3.1572 -1.4161 0.2691 21 1 -1.0500 0.0004 0.0004 22 1 2.7924 0.6041 2.0629 23 1 2.7918 1.9522 0.9006 24 1 5.0484 1.2829 0.1218 25 1 5.0486 1.6154 1.8702 26 1 7.1460 0.2102 0.8690 27 1 10.4596 -2.3135 2.6863 28 1 9.2580 -4.3907 5.2211 29 1 9.5822 -5.7273 2.6642 30 1 12.1786 -4.9603 4.7830 31 1 11.7860 -3.8982 2.6301 32 1 6.8456 -4.1579 4.0159 33 1 5.5772 -2.4261 2.7692 34 1 5.0500 -1.0760 -0.7016 35 1 5.0517 -2.4241 0.4602 36 1 2.7942 -2.0876 -0.5089 37 1 2.7944 -1.7551 1.2394 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12865464_13915762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:39:28 Heat of formation + Delta-G solvation = 60.832261 kcal Electronic energy + Delta-G solvation = -18765.196896 eV Core-core repulsion = 15896.210109 eV Total energy + Delta-G solvation = -2868.986786 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50457 -40.02695 -38.06341 -36.44250 -33.93919 -33.29466 -31.93066 -31.54405 -29.61880 -26.32377 -24.93151 -23.89653 -23.60245 -22.33170 -21.08022 -19.05839 -18.66354 -18.53776 -17.69663 -16.47896 -16.43723 -16.24990 -15.79507 -15.64642 -15.48378 -15.07568 -14.89496 -14.36350 -14.10165 -13.99609 -13.83040 -13.37099 -13.23851 -12.78821 -12.47580 -12.16848 -12.14941 -12.05013 -12.01726 -11.62466 -11.15614 -10.97620 -10.81903 -10.74018 -10.53423 -10.38593 -8.68660 -4.90392 0.23854 0.41504 1.34511 1.60772 1.87100 1.89740 1.96819 2.09708 2.83463 3.38965 3.46582 3.57886 3.68378 3.74376 3.79629 3.97864 4.09053 4.10197 4.14792 4.21991 4.35427 4.36483 4.43993 4.47365 4.60763 4.70034 4.73550 4.80010 4.95343 5.04671 5.06946 5.12265 5.13631 5.22352 5.29684 5.32057 5.41096 5.56154 6.04993 6.50787 6.57410 6.69927 7.16414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.209 4.209 3 C 0.018 3.982 4 H 0.097 0.903 5 C -0.101 4.101 6 C -0.118 4.118 7 C 0.156 3.844 8 H 0.086 0.914 9 N -0.715 5.715 10 C 0.398 3.602 11 N -0.565 5.565 12 C 0.145 3.855 13 C -0.234 4.234 14 C -0.063 4.063 15 O -0.549 6.549 16 Si 0.757 3.243 17 C -0.012 4.012 18 C -0.243 4.243 19 C -0.128 4.128 20 C -0.102 4.102 21 H 0.236 0.764 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.407 0.593 27 H 0.165 0.835 28 H 0.125 0.875 29 H 0.384 0.616 30 H -0.301 1.301 31 H -0.283 1.283 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 2.747 0.436 3.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.209 4.209 3 C 0.000 4.000 4 H 0.115 0.885 5 C -0.139 4.139 6 C -0.156 4.156 7 C 0.051 3.949 8 H 0.104 0.896 9 N -0.346 5.346 10 C 0.162 3.838 11 N -0.283 5.283 12 C -0.012 4.012 13 C -0.240 4.240 14 C -0.173 4.173 15 O -0.357 6.357 16 Si 0.663 3.337 17 C -0.037 4.037 18 C -0.267 4.267 19 C -0.167 4.167 20 C -0.140 4.140 21 H 0.253 0.747 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.243 0.757 27 H 0.182 0.818 28 H 0.143 0.857 29 H 0.233 0.767 30 H -0.229 1.229 31 H -0.210 1.210 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.310 3.018 0.304 3.304 hybrid contribution -0.867 -1.231 -0.750 1.682 sum -2.177 1.787 -0.447 2.851 Atomic orbital electron populations 1.25683 0.96989 1.00027 1.00407 1.23588 0.95210 1.01130 1.00994 1.18449 0.83593 0.96976 1.00943 0.88509 1.21450 0.94504 0.99591 0.98383 1.21730 0.95131 0.95039 1.03702 1.21100 0.77692 0.96618 0.99497 0.89614 1.44679 1.05573 1.30332 1.53993 1.18642 0.88092 0.88259 0.88830 1.67171 1.06899 1.28880 1.25348 1.22485 0.99765 0.88753 0.90232 1.20941 0.95596 1.01239 1.06191 1.24904 1.09950 0.82569 0.99881 1.86563 1.87181 1.31171 1.30822 0.94190 0.72351 0.87228 0.79924 1.21406 0.93184 0.95636 0.93522 1.21659 1.01753 0.98416 1.04917 1.21979 0.94880 1.00041 0.99763 1.21458 0.94703 0.95110 1.02773 0.74703 0.91216 0.90698 0.90193 0.90217 0.75696 0.81800 0.85702 0.76671 1.22879 1.21007 0.83727 0.83570 0.91121 0.91751 0.91451 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.24 19.25 74.32 1.43 1.19 16 2 C -0.21 -0.40 12.56 31.13 0.39 -0.01 16 3 C 0.02 -0.05 2.56 -12.60 -0.03 -0.08 16 4 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 5 C -0.10 0.47 5.16 30.60 0.16 0.63 16 6 C -0.12 0.74 5.39 30.60 0.16 0.91 16 7 C 0.16 -0.71 2.14 44.99 0.10 -0.61 16 8 H 0.09 -0.39 6.45 -2.39 -0.02 -0.40 16 9 N -0.71 0.85 5.24 -324.54 -1.70 -0.85 16 10 C 0.40 1.24 7.63 133.06 1.02 2.25 16 11 N -0.57 -3.24 10.39 -193.26 -2.01 -5.25 16 12 C 0.14 0.40 9.84 84.62 0.83 1.23 16 13 C -0.23 -0.28 5.36 -19.76 -0.11 -0.38 16 14 C -0.06 0.02 2.82 71.24 0.20 0.22 16 15 O -0.55 -1.46 12.84 -148.98 -1.91 -3.38 16 16 Si 0.76 -0.99 29.91 68.60 2.05 1.06 16 17 C -0.01 -0.01 9.83 22.44 0.22 0.21 16 18 C -0.24 -0.25 8.83 22.50 0.20 -0.05 16 19 C -0.13 0.51 5.42 30.59 0.17 0.68 16 20 C -0.10 0.36 5.16 30.59 0.16 0.51 16 21 H 0.24 -1.15 7.80 -4.42 -0.03 -1.19 16 22 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 23 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.41 -0.80 8.73 -92.71 -0.81 -1.61 16 27 H 0.17 -0.13 4.85 -2.91 -0.01 -0.14 16 28 H 0.13 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.38 -0.91 8.70 -74.06 -0.64 -1.56 16 30 H -0.30 -1.86 7.11 99.48 0.71 -1.15 16 31 H -0.28 -0.76 7.01 99.48 0.70 -0.06 16 32 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.15 -0.34 6.08 -2.92 -0.02 -0.36 16 34 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.06 -0.14 7.66 -2.39 -0.02 -0.16 16 36 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -12.68 305.88 0.98 -11.70 By element: Atomic # 1 Polarization: -9.65 SS G_CDS: -0.35 Total: -9.99 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 4.89 Total: 6.71 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -3.71 Total: -6.10 kcal Atomic # 8 Polarization: -1.46 SS G_CDS: -1.91 Total: -3.38 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.05 Total: 1.06 kcal Total: -12.68 0.98 -11.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12865464_13915762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.533 kcal (2) G-P(sol) polarization free energy of solvation -12.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds