Wall clock time and date at job start Mon Mar 8 2021 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 5 5 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 299.99541 * 6 5 3 8 8 H 1.08996 * 109.47407 * 300.00487 * 7 6 5 9 9 N 1.46506 * 109.47042 * 179.97438 * 7 6 5 10 10 C 1.38611 * 119.99610 * 85.00838 * 9 7 6 11 11 N 1.29684 * 124.94517 * 179.72289 * 10 9 7 12 12 C 1.32126 * 116.86070 * 179.81205 * 11 10 9 13 13 C 1.50706 * 122.70735 * 180.22223 * 12 11 10 14 14 O 1.42900 * 109.46742 * 150.26408 * 13 12 11 15 15 Si 1.86302 * 109.46941 * 30.26652 * 13 12 11 16 16 C 1.33324 * 114.58267 * 0.46422 * 12 11 10 17 17 C 1.50700 * 125.95212 * 179.75504 * 16 12 11 18 18 S 1.70969 * 124.94950 * 0.02562 * 10 9 7 19 19 C 1.52997 * 109.46817 * 60.00267 * 7 6 5 20 20 C 1.52996 * 109.47131 * 299.99635 * 19 7 6 21 21 H 4.18740 * 15.03805 * 359.97438 * 4 2 1 22 22 H 1.09001 * 109.47289 * 300.00032 * 5 3 2 23 23 H 1.09004 * 109.47261 * 59.99776 * 5 3 2 24 24 H 1.09004 * 109.47552 * 179.97438 * 6 5 3 25 25 H 1.08996 * 109.47452 * 60.00000 * 6 5 3 26 26 H 0.96996 * 120.00068 * 264.99806 * 9 7 6 27 27 H 1.08990 * 109.47259 * 270.26751 * 13 12 11 28 28 H 0.96705 * 114.00171 * 299.99780 * 14 13 12 29 29 H 1.48494 * 110.00357 * 58.67933 * 15 13 12 30 30 H 1.48499 * 109.99769 * 180.02562 * 15 13 12 31 31 H 1.08999 * 109.46634 * 180.02562 * 17 16 12 32 32 H 1.08996 * 109.46934 * 300.02816 * 17 16 12 33 33 H 1.08994 * 109.47014 * 60.02669 * 17 16 12 34 34 H 1.09001 * 109.47289 * 179.97438 * 19 7 6 35 35 H 1.09000 * 109.47611 * 60.00257 * 19 7 6 36 36 H 1.08996 * 109.47452 * 300.00000 * 20 19 7 37 37 H 1.09004 * 109.47552 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3479 0.9672 5 6 3.1566 -1.4185 -0.2570 6 6 4.6866 -1.4179 -0.2563 7 6 5.1967 -0.4854 -1.3569 8 1 4.8338 -0.8324 -2.3243 9 7 6.6617 -0.4843 -1.3559 10 6 7.3559 -1.4640 -2.0485 11 7 8.6480 -1.5515 -2.1164 12 6 9.1422 -2.5547 -2.8199 13 6 10.6229 -2.7841 -2.9820 14 8 10.8733 -4.1814 -3.1454 15 14 11.5163 -2.1659 -1.4685 16 6 8.2254 -3.3448 -3.3791 17 6 8.5025 -4.5540 -4.2346 18 16 6.6333 -2.7287 -2.9437 19 6 4.6860 0.9338 -1.0999 20 6 3.1561 0.9332 -1.1005 21 1 -1.0500 0.0004 -0.0005 22 1 2.7936 -2.0829 0.5272 23 1 2.7934 -1.7658 -1.2243 24 1 5.0505 -2.4291 -0.4390 25 1 5.0494 -1.0709 0.7111 26 1 7.1459 0.2019 -0.8707 27 1 10.9800 -2.2458 -3.8598 28 1 10.5805 -4.7234 -2.4000 29 1 11.0158 -2.8695 -0.2604 30 1 12.9775 -2.3858 -1.6161 31 1 7.5592 -4.9995 -4.5505 32 1 9.0749 -4.2544 -5.1125 33 1 9.0739 -5.2826 -3.6596 34 1 5.0497 1.5983 -1.8836 35 1 5.0489 1.2810 -0.1325 36 1 2.7932 0.5862 -2.0679 37 1 2.7922 1.9444 -0.9179 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12865464_15704122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:39:33 Heat of formation + Delta-G solvation = 58.887205 kcal Electronic energy + Delta-G solvation = -19332.297249 eV Core-core repulsion = 16396.840746 eV Total energy + Delta-G solvation = -2935.456503 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.07318 -40.30337 -37.92823 -36.53442 -33.90051 -32.56836 -32.06496 -30.31820 -28.82088 -25.60342 -24.74252 -24.01144 -23.44935 -21.63506 -20.40653 -19.14844 -19.08930 -17.94581 -17.32968 -16.87674 -16.56696 -15.93013 -15.80188 -15.61558 -15.43846 -15.16524 -14.41194 -14.16738 -14.09896 -13.83814 -13.67509 -13.46101 -13.41247 -13.04695 -12.66354 -12.43721 -12.35151 -12.28201 -12.07494 -11.85676 -11.74724 -11.09514 -11.04341 -10.85928 -10.56084 -10.46495 -9.96074 -8.59101 -4.65056 0.06097 0.21436 0.81867 1.41101 1.84128 1.85844 1.86369 1.90402 1.99048 2.14278 3.24622 3.33243 3.38168 3.51453 3.57538 3.88450 3.93413 4.01788 4.11642 4.20295 4.21185 4.26161 4.36611 4.49361 4.54460 4.61619 4.73323 4.81132 4.86241 4.90419 4.92525 4.94335 5.07528 5.10059 5.12458 5.21275 5.31600 5.61604 6.27577 6.40671 6.67828 6.98772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.188 4.188 3 C 0.020 3.980 4 H 0.094 0.906 5 C -0.108 4.108 6 C -0.137 4.137 7 C 0.151 3.849 8 H 0.083 0.917 9 N -0.690 5.690 10 C 0.321 3.679 11 N -0.539 5.539 12 C 0.068 3.932 13 C -0.042 4.042 14 O -0.526 6.526 15 Si 0.722 3.278 16 C -0.244 4.244 17 C -0.059 4.059 18 S 0.099 5.901 19 C -0.124 4.124 20 C -0.107 4.107 21 H 0.217 0.783 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.413 0.587 27 H 0.124 0.876 28 H 0.375 0.625 29 H -0.268 1.268 30 H -0.261 1.261 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 1.909 0.737 3.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.188 4.188 3 C 0.002 3.998 4 H 0.112 0.888 5 C -0.146 4.146 6 C -0.176 4.176 7 C 0.045 3.955 8 H 0.101 0.899 9 N -0.330 5.330 10 C -0.050 4.050 11 N -0.266 5.266 12 C -0.063 4.063 13 C -0.154 4.154 14 O -0.331 6.331 15 Si 0.622 3.378 16 C -0.367 4.367 17 C -0.119 4.119 18 S 0.348 5.652 19 C -0.162 4.162 20 C -0.145 4.145 21 H 0.234 0.766 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.251 0.749 27 H 0.141 0.859 28 H 0.223 0.777 29 H -0.193 1.193 30 H -0.187 1.187 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.447 1.999 0.894 4.084 hybrid contribution 0.250 -0.867 0.184 0.921 sum -3.197 1.132 1.078 3.559 Atomic orbital electron populations 1.24997 0.96028 1.00161 1.00529 1.22945 0.94185 1.00907 1.00775 1.18361 0.84574 0.96513 1.00381 0.88795 1.21524 0.94363 0.95516 1.03205 1.22085 0.95523 1.00385 0.99633 1.21206 0.77564 0.97044 0.99650 0.89878 1.44052 1.05020 1.29140 1.54821 1.23279 0.90711 0.94548 0.96449 1.65739 1.08954 1.25381 1.26492 1.20069 0.97704 0.91668 0.96814 1.24465 0.91934 0.85656 1.13354 1.86623 1.84058 1.16250 1.46190 0.93624 0.76931 0.92625 0.74605 1.25129 0.92785 1.07046 1.11740 1.20133 1.01216 0.92496 0.98012 1.84007 1.09739 1.23025 1.48395 1.21779 0.95899 0.94965 1.03549 1.21508 0.93968 1.00122 0.98893 0.76592 0.90748 0.91062 0.90964 0.90663 0.74863 0.85877 0.77688 1.19252 1.18652 0.92334 0.90590 0.90255 0.90252 0.90470 0.90965 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.05 19.25 29.55 0.57 0.52 16 2 C -0.19 -0.10 12.56 -37.12 -0.47 -0.56 16 3 C 0.02 -0.03 2.56 -93.40 -0.24 -0.27 16 4 H 0.09 -0.21 8.14 -51.93 -0.42 -0.64 16 5 C -0.11 0.22 5.16 -26.73 -0.14 0.08 16 6 C -0.14 0.31 5.51 -26.73 -0.15 0.17 16 7 C 0.15 -0.36 2.40 -67.93 -0.16 -0.53 16 8 H 0.08 -0.16 7.26 -51.93 -0.38 -0.53 16 9 N -0.69 0.76 5.23 -55.78 -0.29 0.47 16 10 C 0.32 0.45 8.22 -87.68 -0.72 -0.27 16 11 N -0.54 -1.44 8.96 -11.36 -0.10 -1.54 16 12 C 0.07 0.17 5.91 -84.18 -0.50 -0.33 16 13 C -0.04 -0.06 2.94 36.01 0.11 0.05 16 14 O -0.53 -0.69 10.17 -35.23 -0.36 -1.04 16 15 Si 0.72 1.00 32.09 -169.99 -5.45 -4.45 16 16 C -0.24 -0.47 6.50 -36.02 -0.23 -0.71 16 17 C -0.06 -0.03 8.91 36.01 0.32 0.29 16 18 S 0.10 0.09 21.69 -107.50 -2.33 -2.24 16 19 C -0.12 0.43 5.39 -26.73 -0.14 0.29 16 20 C -0.11 0.28 5.16 -26.73 -0.14 0.15 16 21 H 0.22 -0.55 7.80 -54.09 -0.42 -0.97 16 22 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 23 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 24 H 0.07 -0.09 8.04 -51.93 -0.42 -0.51 16 25 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 26 H 0.41 -0.85 8.73 -40.82 -0.36 -1.21 16 27 H 0.12 0.09 7.96 -51.93 -0.41 -0.33 16 28 H 0.38 -0.41 8.13 45.56 0.37 -0.04 16 29 H -0.27 -1.10 7.11 56.52 0.40 -0.70 16 30 H -0.26 -0.95 7.11 56.52 0.40 -0.55 16 31 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.08 -0.02 6.39 -51.93 -0.33 -0.35 16 34 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 35 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 36 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 37 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 LS Contribution 318.55 15.07 4.80 4.80 Total: 0.00 -5.11 318.55 -11.00 -16.11 By element: Atomic # 1 Polarization: -5.60 SS G_CDS: -5.37 Total: -10.97 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.89 Total: -1.13 kcal Atomic # 7 Polarization: -0.68 SS G_CDS: -0.39 Total: -1.07 kcal Atomic # 8 Polarization: -0.69 SS G_CDS: -0.36 Total: -1.04 kcal Atomic # 14 Polarization: 1.00 SS G_CDS: -5.45 Total: -4.45 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.33 Total: -2.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -5.11 -11.00 -16.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12865464_15704122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.002 kcal (2) G-P(sol) polarization free energy of solvation -5.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds