Wall clock time and date at job start Mon Mar 8 2021 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 5 5 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 299.99541 * 6 5 3 8 8 H 1.08996 * 109.47407 * 300.00487 * 7 6 5 9 9 N 1.46506 * 109.47042 * 179.97438 * 7 6 5 10 10 C 1.38611 * 119.99610 * 85.00838 * 9 7 6 11 11 N 1.29684 * 124.94517 * 179.72289 * 10 9 7 12 12 C 1.32126 * 116.86070 * 179.81205 * 11 10 9 13 13 C 1.50706 * 122.70735 * 180.22223 * 12 11 10 14 14 O 1.42900 * 109.46742 * 150.26408 * 13 12 11 15 15 Si 1.86302 * 109.46941 * 30.26652 * 13 12 11 16 16 C 1.33324 * 114.58267 * 0.46422 * 12 11 10 17 17 C 1.50700 * 125.95212 * 179.75504 * 16 12 11 18 18 S 1.70969 * 124.94950 * 0.02562 * 10 9 7 19 19 C 1.52997 * 109.46817 * 60.00267 * 7 6 5 20 20 C 1.52996 * 109.47131 * 299.99635 * 19 7 6 21 21 H 4.18740 * 15.03805 * 359.97438 * 4 2 1 22 22 H 1.09001 * 109.47289 * 300.00032 * 5 3 2 23 23 H 1.09004 * 109.47261 * 59.99776 * 5 3 2 24 24 H 1.09004 * 109.47552 * 179.97438 * 6 5 3 25 25 H 1.08996 * 109.47452 * 60.00000 * 6 5 3 26 26 H 0.96996 * 120.00068 * 264.99806 * 9 7 6 27 27 H 1.08990 * 109.47259 * 270.26751 * 13 12 11 28 28 H 0.96705 * 114.00171 * 299.99780 * 14 13 12 29 29 H 1.48494 * 110.00357 * 58.67933 * 15 13 12 30 30 H 1.48499 * 109.99769 * 180.02562 * 15 13 12 31 31 H 1.08999 * 109.46634 * 180.02562 * 17 16 12 32 32 H 1.08996 * 109.46934 * 300.02816 * 17 16 12 33 33 H 1.08994 * 109.47014 * 60.02669 * 17 16 12 34 34 H 1.09001 * 109.47289 * 179.97438 * 19 7 6 35 35 H 1.09000 * 109.47611 * 60.00257 * 19 7 6 36 36 H 1.08996 * 109.47452 * 300.00000 * 20 19 7 37 37 H 1.09004 * 109.47552 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3479 0.9672 5 6 3.1566 -1.4185 -0.2570 6 6 4.6866 -1.4179 -0.2563 7 6 5.1967 -0.4854 -1.3569 8 1 4.8338 -0.8324 -2.3243 9 7 6.6617 -0.4843 -1.3559 10 6 7.3559 -1.4640 -2.0485 11 7 8.6480 -1.5515 -2.1164 12 6 9.1422 -2.5547 -2.8199 13 6 10.6229 -2.7841 -2.9820 14 8 10.8733 -4.1814 -3.1454 15 14 11.5163 -2.1659 -1.4685 16 6 8.2254 -3.3448 -3.3791 17 6 8.5025 -4.5540 -4.2346 18 16 6.6333 -2.7287 -2.9437 19 6 4.6860 0.9338 -1.0999 20 6 3.1561 0.9332 -1.1005 21 1 -1.0500 0.0004 -0.0005 22 1 2.7936 -2.0829 0.5272 23 1 2.7934 -1.7658 -1.2243 24 1 5.0505 -2.4291 -0.4390 25 1 5.0494 -1.0709 0.7111 26 1 7.1459 0.2019 -0.8707 27 1 10.9800 -2.2458 -3.8598 28 1 10.5805 -4.7234 -2.4000 29 1 11.0158 -2.8695 -0.2604 30 1 12.9775 -2.3858 -1.6161 31 1 7.5592 -4.9995 -4.5505 32 1 9.0749 -4.2544 -5.1125 33 1 9.0739 -5.2826 -3.6596 34 1 5.0497 1.5983 -1.8836 35 1 5.0489 1.2810 -0.1325 36 1 2.7932 0.5862 -2.0679 37 1 2.7922 1.9444 -0.9179 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12865464_15704122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:39:33 Heat of formation + Delta-G solvation = 65.644207 kcal Electronic energy + Delta-G solvation = -19332.004243 eV Core-core repulsion = 16396.840746 eV Total energy + Delta-G solvation = -2935.163497 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.12346 -40.18876 -37.98404 -36.49713 -33.86908 -32.58526 -31.87784 -30.27332 -28.84420 -25.66122 -24.73700 -23.85059 -23.36525 -21.53247 -20.39976 -19.14439 -19.02802 -18.02348 -17.33583 -16.82248 -16.61360 -15.82516 -15.78962 -15.65389 -15.28352 -15.15042 -14.32813 -14.27011 -14.03505 -13.86516 -13.72281 -13.45429 -13.27161 -12.98328 -12.66908 -12.49707 -12.21815 -12.17034 -12.05509 -11.90460 -11.68761 -11.06576 -10.96858 -10.80010 -10.65195 -10.54144 -10.03679 -8.61955 -4.78894 -0.02214 0.16051 0.73941 1.29287 1.66889 1.82807 1.87861 1.89544 1.92975 1.99913 3.27539 3.39253 3.50216 3.58956 3.69298 4.04499 4.10359 4.14340 4.19599 4.30112 4.32136 4.38053 4.45974 4.54995 4.65817 4.72022 4.79610 4.84809 4.94635 5.04774 5.06893 5.11128 5.12375 5.22423 5.27762 5.29257 5.38453 5.66984 6.31777 6.44694 6.70907 6.92911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.209 4.209 3 C 0.019 3.981 4 H 0.101 0.899 5 C -0.103 4.103 6 C -0.131 4.131 7 C 0.152 3.848 8 H 0.079 0.921 9 N -0.681 5.681 10 C 0.314 3.686 11 N -0.558 5.558 12 C 0.056 3.944 13 C -0.041 4.041 14 O -0.533 6.533 15 Si 0.783 3.217 16 C -0.259 4.259 17 C -0.057 4.057 18 S 0.112 5.888 19 C -0.116 4.116 20 C -0.103 4.103 21 H 0.236 0.764 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.419 0.581 27 H 0.131 0.869 28 H 0.384 0.616 29 H -0.305 1.305 30 H -0.292 1.292 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 2.362 0.682 4.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.209 4.209 3 C 0.001 3.999 4 H 0.119 0.881 5 C -0.141 4.141 6 C -0.170 4.170 7 C 0.047 3.953 8 H 0.097 0.903 9 N -0.321 5.321 10 C -0.057 4.057 11 N -0.285 5.285 12 C -0.074 4.074 13 C -0.154 4.154 14 O -0.340 6.340 15 Si 0.688 3.312 16 C -0.382 4.382 17 C -0.116 4.116 18 S 0.361 5.639 19 C -0.154 4.154 20 C -0.141 4.141 21 H 0.252 0.748 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.258 0.742 27 H 0.149 0.851 28 H 0.234 0.766 29 H -0.232 1.232 30 H -0.220 1.220 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.872 2.470 0.838 4.668 hybrid contribution 0.321 -1.030 0.247 1.107 sum -3.551 1.439 1.085 3.982 Atomic orbital electron populations 1.25676 0.97006 1.00025 1.00441 1.23570 0.95202 1.01119 1.00963 1.18456 0.83587 0.96798 1.01078 0.88109 1.21458 0.94420 0.95364 1.02847 1.22014 0.95239 0.99894 0.99861 1.21262 0.76783 0.97825 0.99430 0.90272 1.44157 1.05434 1.28507 1.54035 1.23518 0.90700 0.95012 0.96516 1.65745 1.09590 1.25911 1.27300 1.20215 0.98125 0.91931 0.97126 1.24495 0.91617 0.85774 1.13482 1.86598 1.84122 1.16334 1.46914 0.92873 0.74082 0.91697 0.72505 1.25365 0.93278 1.07502 1.12053 1.20142 1.01577 0.92184 0.97723 1.83910 1.09106 1.22730 1.48180 1.21721 0.95165 0.94131 1.04354 1.21463 0.94416 0.99894 0.98285 0.74776 0.91133 0.91441 0.91869 0.90191 0.74206 0.85143 0.76604 1.23225 1.21979 0.91716 0.90982 0.89645 0.89809 0.89347 0.91415 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.13 19.25 74.32 1.43 1.31 16 2 C -0.21 -0.24 12.56 31.13 0.39 0.15 16 3 C 0.02 -0.07 2.56 -12.60 -0.03 -0.10 16 4 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 5 C -0.10 0.42 5.16 30.59 0.16 0.57 16 6 C -0.13 0.63 5.51 30.59 0.17 0.80 16 7 C 0.15 -0.80 2.40 44.99 0.11 -0.70 16 8 H 0.08 -0.32 7.26 -2.39 -0.02 -0.34 16 9 N -0.68 1.79 5.23 -330.39 -1.73 0.07 16 10 C 0.31 0.85 8.22 179.32 1.47 2.32 16 11 N -0.56 -3.05 8.96 -189.85 -1.70 -4.75 16 12 C 0.06 0.29 5.91 41.40 0.24 0.53 16 13 C -0.04 -0.12 2.94 71.24 0.21 0.09 16 14 O -0.53 -1.46 10.17 -148.98 -1.52 -2.98 16 15 Si 0.78 2.75 32.09 68.60 2.20 4.95 16 16 C -0.26 -1.03 6.50 24.57 0.16 -0.88 16 17 C -0.06 -0.05 8.91 71.24 0.63 0.58 16 18 S 0.11 0.21 21.69 -56.49 -1.23 -1.02 16 19 C -0.12 0.92 5.39 30.59 0.16 1.08 16 20 C -0.10 0.59 5.16 30.59 0.16 0.75 16 21 H 0.24 -1.24 7.80 -4.42 -0.03 -1.27 16 22 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 24 H 0.06 -0.16 8.04 -2.39 -0.02 -0.18 16 25 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.42 -2.02 8.73 -92.71 -0.81 -2.82 16 27 H 0.13 0.17 7.96 -2.39 -0.02 0.15 16 28 H 0.38 -0.73 8.13 -74.05 -0.60 -1.34 16 29 H -0.30 -2.95 7.11 99.48 0.71 -2.24 16 30 H -0.29 -2.47 7.11 99.48 0.71 -1.77 16 31 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.09 -0.05 6.39 -2.39 -0.02 -0.07 16 34 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.09 -0.86 8.14 -2.39 -0.02 -0.87 16 36 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: 0.00 -11.89 318.55 1.00 -10.88 By element: Atomic # 1 Polarization: -13.37 SS G_CDS: -0.30 Total: -13.67 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.27 Total: 6.51 kcal Atomic # 7 Polarization: -1.25 SS G_CDS: -3.43 Total: -4.68 kcal Atomic # 8 Polarization: -1.46 SS G_CDS: -1.52 Total: -2.98 kcal Atomic # 14 Polarization: 2.75 SS G_CDS: 2.20 Total: 4.95 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.23 Total: -1.02 kcal Total: -11.89 1.00 -10.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12865464_15704122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.527 kcal (2) G-P(sol) polarization free energy of solvation -11.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds