Wall clock time and date at job start Mon Mar 8 2021 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33333 * 125.94770 * 2 1 4 4 C 1.50700 * 122.71248 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.46970 * 330.00173 * 4 3 2 6 6 Si 1.86300 * 109.47036 * 210.00483 * 4 3 2 7 7 N 1.32120 * 114.57604 * 180.02562 * 3 2 1 8 8 C 1.29683 * 116.86967 * 359.97438 * 7 3 2 9 9 N 1.38609 * 124.95167 * 179.97438 * 8 7 3 10 10 C 1.46501 * 120.00334 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.46741 * 34.99981 * 10 9 8 12 12 C 1.52999 * 109.47283 * 154.99764 * 10 9 8 13 13 C 1.52994 * 109.47024 * 60.00165 * 12 10 9 14 14 C 1.53004 * 109.47215 * 60.00051 * 13 12 10 15 15 H 1.08995 * 109.47216 * 59.99918 * 14 13 12 16 16 N 1.46498 * 109.47065 * 179.97438 * 14 13 12 17 17 C 1.34777 * 119.99828 * 204.72115 * 16 14 13 18 18 O 1.21513 * 119.99898 * 0.28095 * 17 16 14 19 19 O 1.34638 * 120.00235 * 180.27525 * 17 16 14 20 20 C 1.45195 * 117.00135 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47224 * 60.00489 * 20 19 17 22 22 C 1.53005 * 109.47161 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47089 * 299.99988 * 20 19 17 24 24 C 1.52999 * 109.47083 * 299.99913 * 14 13 12 25 25 C 1.52997 * 109.47229 * 275.00119 * 10 9 8 26 26 S 1.70970 * 110.10139 * 0.24364 * 8 7 3 27 27 H 1.08991 * 109.47504 * 90.00448 * 1 2 3 28 28 H 1.09008 * 109.46925 * 210.00487 * 1 2 3 29 29 H 1.09000 * 109.47263 * 329.99673 * 1 2 3 30 30 H 1.08997 * 109.46912 * 90.00460 * 4 3 2 31 31 H 0.96701 * 114.00007 * 300.00139 * 5 4 3 32 32 H 1.48504 * 109.99728 * 180.02562 * 6 4 3 33 33 H 1.48501 * 109.99858 * 301.31599 * 6 4 3 34 34 H 0.97004 * 120.00136 * 359.97438 * 9 8 7 35 35 H 1.08996 * 109.47245 * 300.00197 * 12 10 9 36 36 H 1.09003 * 109.46809 * 180.02562 * 12 10 9 37 37 H 1.08994 * 109.47599 * 300.00048 * 13 12 10 38 38 H 1.08998 * 109.47530 * 179.97438 * 13 12 10 39 39 H 0.97001 * 120.00384 * 25.00562 * 16 14 13 40 40 H 1.09001 * 109.47095 * 59.99964 * 21 20 19 41 41 H 1.09006 * 109.47298 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46856 * 299.99470 * 21 20 19 43 43 H 1.08995 * 109.47042 * 59.99563 * 22 20 19 44 44 H 1.08992 * 109.47205 * 180.02562 * 22 20 19 45 45 H 1.09001 * 109.46587 * 300.00252 * 22 20 19 46 46 H 1.09003 * 109.46840 * 60.00621 * 23 20 19 47 47 H 1.09006 * 109.47115 * 179.97438 * 23 20 19 48 48 H 1.08995 * 109.47291 * 299.99982 * 23 20 19 49 49 H 1.08996 * 109.47245 * 179.97438 * 24 14 13 50 50 H 1.08995 * 109.47098 * 300.00077 * 24 14 13 51 51 H 1.08996 * 109.47253 * 59.99709 * 25 10 9 52 52 H 1.09003 * 109.47446 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4831 0.0006 5 8 0.4809 2.5023 -0.6726 6 14 2.9318 3.6152 -0.8779 7 7 3.5850 0.8189 -0.0005 8 6 3.9315 -0.4308 -0.0005 9 7 5.2384 -0.8924 -0.0015 10 6 5.5067 -2.3327 -0.0007 11 1 4.7449 -2.8443 -0.5890 12 6 6.8846 -2.5952 -0.6116 13 6 7.9537 -1.8769 0.2141 14 6 7.9250 -2.4003 1.6515 15 1 8.1246 -3.4718 1.6521 16 7 8.9492 -1.7130 2.4420 17 6 9.4609 -2.3026 3.5406 18 8 9.0765 -3.4065 3.8725 19 8 10.3981 -1.6687 4.2703 20 6 10.9046 -2.3638 5.4401 21 6 11.5430 -3.6863 5.0108 22 6 11.9527 -1.4935 6.1366 23 6 9.7515 -2.6439 6.4059 24 6 6.5471 -2.1378 2.2624 25 6 5.4779 -2.8560 1.4366 26 16 2.5413 -1.4260 -0.0065 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5140 29 1 -0.3634 0.8899 0.5139 30 1 1.6095 2.8212 1.0284 31 1 0.5228 2.2127 -1.5943 32 1 2.4027 5.0028 -0.8837 33 1 4.2558 3.5798 -0.2064 34 1 5.9756 -0.2618 -0.0027 35 1 6.9051 -2.2223 -1.6356 36 1 7.0839 -3.6668 -0.6114 37 1 7.7543 -0.8054 0.2136 38 1 8.9355 -2.0642 -0.2208 39 1 9.2561 -0.8317 2.1771 40 1 12.3645 -3.4867 4.3227 41 1 11.9229 -4.2084 5.8890 42 1 10.7961 -4.3062 4.5149 43 1 11.4976 -0.5515 6.4424 44 1 12.3332 -2.0155 7.0144 45 1 12.7742 -1.2936 5.4486 46 1 9.0046 -3.2638 5.9100 47 1 10.1317 -3.1662 7.2839 48 1 9.2968 -1.7017 6.7118 49 1 6.5265 -2.5110 3.2863 50 1 6.3476 -1.0663 2.2619 51 1 4.4962 -2.6690 1.8718 52 1 5.6770 -3.9277 1.4372 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12867096_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:45:21 Heat of formation + Delta-G solvation = -67.607999 kcal Electronic energy + Delta-G solvation = -32417.127930 eV Core-core repulsion = 28123.933934 eV Total energy + Delta-G solvation = -4293.193996 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.176 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.96670 -41.14951 -40.40839 -38.42613 -37.66474 -36.29510 -35.20488 -34.10269 -32.42455 -31.95572 -30.06954 -28.82113 -28.41991 -28.35395 -25.63098 -24.57372 -24.46387 -23.73710 -22.59345 -21.33674 -20.78436 -20.61185 -19.29817 -18.70607 -17.87324 -17.84186 -17.49141 -17.21510 -16.87785 -16.63991 -16.25960 -16.01000 -15.66561 -15.55945 -15.42321 -15.19524 -14.95335 -14.57874 -14.31581 -14.10076 -14.00171 -13.78826 -13.72476 -13.43884 -13.36029 -13.33676 -13.25127 -13.14929 -12.95846 -12.91671 -12.70429 -12.56941 -12.50219 -12.36668 -12.24339 -12.10546 -11.93568 -11.64363 -11.55534 -11.43328 -11.15324 -10.99103 -10.58813 -10.33399 -10.21406 -9.99471 -8.59868 -4.96196 0.01628 0.19344 0.77960 1.11932 1.31292 1.71081 1.73579 1.85805 1.96953 2.12590 3.06351 3.39822 3.53169 3.56118 3.60210 3.69175 3.74308 3.80246 3.89306 3.92485 4.05382 4.19277 4.27433 4.31078 4.34066 4.38952 4.45756 4.50665 4.53585 4.56150 4.68486 4.71005 4.71602 4.78644 4.81830 4.82355 4.85861 4.92811 5.00629 5.02091 5.06848 5.08639 5.11738 5.18121 5.21558 5.22058 5.26191 5.36377 5.38786 5.54960 5.69378 6.32801 6.34589 6.68822 6.97488 7.29633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.250 4.250 3 C 0.054 3.946 4 C -0.032 4.032 5 O -0.540 6.540 6 Si 0.793 3.207 7 N -0.575 5.575 8 C 0.314 3.686 9 N -0.680 5.680 10 C 0.151 3.849 11 H 0.094 0.906 12 C -0.113 4.113 13 C -0.122 4.122 14 C 0.165 3.835 15 H 0.084 0.916 16 N -0.699 5.699 17 C 0.643 3.357 18 O -0.591 6.591 19 O -0.373 6.373 20 C 0.128 3.872 21 C -0.179 4.179 22 C -0.138 4.138 23 C -0.180 4.180 24 C -0.122 4.122 25 C -0.131 4.131 26 S 0.117 5.883 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.394 0.606 32 H -0.296 1.296 33 H -0.300 1.300 34 H 0.412 0.588 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.045 0.955 50 H 0.060 0.940 51 H 0.061 0.939 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 -2.550 -4.490 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.373 4.373 3 C -0.076 4.076 4 C -0.145 4.145 5 O -0.347 6.347 6 Si 0.700 3.300 7 N -0.303 5.303 8 C -0.058 4.058 9 N -0.322 5.322 10 C 0.046 3.954 11 H 0.112 0.888 12 C -0.151 4.151 13 C -0.160 4.160 14 C 0.062 3.938 15 H 0.102 0.898 16 N -0.358 5.358 17 C 0.397 3.603 18 O -0.482 6.482 19 O -0.287 6.287 20 C 0.091 3.909 21 C -0.236 4.236 22 C -0.195 4.195 23 C -0.237 4.237 24 C -0.161 4.161 25 C -0.170 4.170 26 S 0.366 5.634 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.245 0.755 32 H -0.224 1.224 33 H -0.228 1.228 34 H 0.252 0.748 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.251 0.749 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.079 0.921 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.414 -3.091 -3.645 5.354 hybrid contribution 0.023 1.202 1.025 1.580 sum 2.437 -1.890 -2.620 4.047 Atomic orbital electron populations 1.20215 0.85533 1.02823 1.03564 1.25380 1.02096 0.93042 1.16752 1.20216 0.86836 0.97550 1.02971 1.24443 0.92805 0.95445 1.01818 1.86476 1.28086 1.89717 1.30404 0.93215 0.73973 0.73966 0.88842 1.65967 1.17785 1.17702 1.28801 1.23524 0.92872 0.91367 0.98014 1.44263 1.00939 1.07654 1.79300 1.21282 0.99573 0.78276 0.96227 0.88786 1.21750 0.90465 1.03154 0.99775 1.21797 1.01247 1.01003 0.91993 1.21063 0.85088 0.97514 0.90107 0.89790 1.44878 1.42651 1.22804 1.25498 1.18377 0.78369 0.82714 0.80871 1.90901 1.64553 1.21029 1.71685 1.86311 1.53079 1.49332 1.40002 1.22338 0.94195 0.92772 0.81556 1.22465 1.01263 0.96567 1.03308 1.21895 0.96967 0.99899 1.00778 1.22474 0.98786 1.02611 0.99861 1.21795 0.94448 1.00839 0.98970 1.21994 0.98634 1.01374 0.95026 1.83846 0.95852 1.09776 1.73900 0.89583 0.92080 0.89841 0.87238 0.75537 1.22400 1.22758 0.74829 0.88678 0.87990 0.90556 0.89135 0.74923 0.91855 0.89487 0.91642 0.91417 0.88274 0.91093 0.91730 0.89421 0.92301 0.93640 0.92108 0.92062 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.04 8.95 71.23 0.64 0.67 16 2 C -0.25 -0.70 6.50 24.58 0.16 -0.54 16 3 C 0.05 0.26 5.92 41.41 0.25 0.50 16 4 C -0.03 -0.09 2.83 71.24 0.20 0.11 16 5 O -0.54 0.02 9.89 -148.98 -1.47 -1.45 16 6 Si 0.79 2.36 32.08 68.60 2.20 4.56 16 7 N -0.57 -3.65 8.95 -189.86 -1.70 -5.35 16 8 C 0.31 0.79 8.22 179.32 1.47 2.26 16 9 N -0.68 1.87 4.39 -330.40 -1.45 0.42 16 10 C 0.15 -0.99 2.74 44.99 0.12 -0.87 16 11 H 0.09 -0.68 7.25 -2.39 -0.02 -0.70 16 12 C -0.11 1.15 5.61 30.59 0.17 1.32 16 13 C -0.12 1.06 5.22 30.59 0.16 1.22 16 14 C 0.17 -0.46 2.45 44.99 0.11 -0.35 16 15 H 0.08 0.00 7.58 -2.39 -0.02 -0.01 16 16 N -0.70 0.05 5.08 -570.13 -2.90 -2.85 16 17 C 0.64 4.23 8.02 129.79 1.04 5.27 16 18 O -0.59 -6.75 11.55 19.80 0.23 -6.52 16 19 O -0.37 -2.24 9.94 -55.48 -0.55 -2.79 16 20 C 0.13 0.44 1.13 -10.79 -0.01 0.42 16 21 C -0.18 -0.57 8.37 71.98 0.60 0.04 16 22 C -0.14 0.20 8.85 71.98 0.64 0.83 16 23 C -0.18 -0.73 8.37 71.98 0.60 -0.12 16 24 C -0.12 0.08 5.34 30.60 0.16 0.24 16 25 C -0.13 0.49 5.62 30.59 0.17 0.66 16 26 S 0.12 0.09 21.70 -56.49 -1.23 -1.14 16 27 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 29 H 0.08 0.10 6.61 -2.39 -0.02 0.09 16 30 H 0.11 0.49 7.96 -2.39 -0.02 0.48 16 31 H 0.39 -2.92 8.68 -74.06 -0.64 -3.57 16 32 H -0.30 -2.44 7.11 99.48 0.71 -1.73 16 33 H -0.30 -3.27 7.11 99.48 0.71 -2.56 16 34 H 0.41 -1.47 6.99 -92.71 -0.65 -2.11 16 35 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 36 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 37 H 0.08 -0.72 6.51 -2.39 -0.02 -0.73 16 38 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.41 -1.67 8.71 -92.71 -0.81 -2.48 16 40 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 42 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 43 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 47 H 0.09 0.04 8.14 -2.38 -0.02 0.02 16 48 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 50 H 0.06 0.05 7.60 -2.39 -0.02 0.03 16 51 H 0.06 -0.06 8.06 -2.39 -0.02 -0.08 16 52 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 Total: 0.00 -18.61 413.62 -1.49 -20.09 By element: Atomic # 1 Polarization: -15.53 SS G_CDS: -1.11 Total: -16.64 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 6.49 Total: 11.66 kcal Atomic # 7 Polarization: -1.73 SS G_CDS: -6.05 Total: -7.77 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.80 Total: -10.76 kcal Atomic # 14 Polarization: 2.36 SS G_CDS: 2.20 Total: 4.56 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.23 Total: -1.14 kcal Total: -18.61 -1.49 -20.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12867096_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.514 kcal (2) G-P(sol) polarization free energy of solvation -18.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds