Wall clock time and date at job start Mon Mar 8 2021 07:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86304 * 109.46725 * 2 1 4 4 C 1.50699 * 109.47184 * 119.99892 * 2 1 3 5 5 C 1.33322 * 125.95140 * 65.00264 * 4 2 1 6 6 N 1.32129 * 114.58097 * 180.02562 * 5 4 2 7 7 C 1.29682 * 116.86138 * 0.02562 * 6 5 4 8 8 N 1.38614 * 124.94817 * 180.02562 * 7 6 5 9 9 C 1.46507 * 119.99752 * 359.96863 * 8 7 6 10 10 H 1.08997 * 109.46824 * 35.00719 * 9 8 7 11 11 C 1.53003 * 109.46591 * 155.00394 * 9 8 7 12 12 C 1.52998 * 109.47251 * 60.00568 * 11 9 8 13 13 C 1.52996 * 109.47218 * 59.99675 * 12 11 9 14 14 H 1.08994 * 109.47280 * 60.00521 * 13 12 11 15 15 O 1.42904 * 109.46908 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47327 * 299.99850 * 13 12 11 17 17 C 1.53001 * 109.47038 * 60.00238 * 16 13 12 18 18 S 1.70965 * 110.10352 * 359.72653 * 7 6 5 19 19 H 0.96700 * 114.00234 * 299.99899 * 1 2 3 20 20 H 1.09002 * 109.47382 * 239.99890 * 2 1 3 21 21 H 1.48499 * 109.99644 * 178.68105 * 3 2 1 22 22 H 1.48492 * 110.00078 * 299.99611 * 3 2 1 23 23 H 1.07998 * 122.71319 * 359.97438 * 5 4 2 24 24 H 0.96996 * 120.00469 * 179.97438 * 8 7 6 25 25 H 1.09000 * 109.46579 * 180.02562 * 11 9 8 26 26 H 1.09001 * 109.47208 * 299.99464 * 11 9 8 27 27 H 1.09008 * 109.46867 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.46663 * 299.99296 * 12 11 9 29 29 H 0.96697 * 114.00420 * 180.02562 * 15 13 12 30 30 H 1.08994 * 109.47496 * 180.02562 * 16 13 12 31 31 H 1.09000 * 109.47062 * 300.00690 * 16 13 12 32 32 H 1.09002 * 109.46975 * 180.02562 * 17 16 13 33 33 H 1.08995 * 109.47237 * 59.99696 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7623 -2.0025 1.5122 6 7 2.2974 -2.3902 2.6563 7 6 2.9100 -1.4843 3.3535 8 7 3.5294 -1.7054 4.5736 9 6 3.5213 -3.0449 5.1671 10 1 3.5861 -3.7928 4.3768 11 6 4.7183 -3.1926 6.1086 12 6 4.6274 -2.1428 7.2178 13 6 3.3312 -2.3440 8.0054 14 1 3.3253 -3.3404 8.4470 15 8 3.2461 -1.3630 9.0410 16 6 2.1343 -2.1961 7.0640 17 6 2.2251 -3.2460 5.9547 18 16 2.8493 0.0206 2.5444 19 1 -0.3933 0.4417 0.7650 20 1 1.7924 -0.5138 -0.8900 21 1 3.5345 1.7704 0.0321 22 1 1.5615 2.4679 -1.2085 23 1 1.2302 -2.6776 0.8584 24 1 3.9682 -0.9734 5.0345 25 1 4.7126 -4.1893 6.5498 26 1 5.6418 -3.0495 5.5474 27 1 5.4800 -2.2485 7.8888 28 1 4.6334 -1.1463 6.7762 29 1 2.4477 -1.4308 9.5823 30 1 1.2108 -2.3389 7.6251 31 1 2.1403 -1.1996 6.6224 32 1 1.3726 -3.1403 5.2838 33 1 2.2192 -4.2425 6.3962 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12892150_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:08:17 Heat of formation + Delta-G solvation = -35.111706 kcal Electronic energy + Delta-G solvation = -17361.390480 eV Core-core repulsion = 14515.165586 eV Total energy + Delta-G solvation = -2846.224894 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08161 -40.06823 -37.96280 -37.22147 -34.57341 -31.90828 -31.32441 -29.75219 -26.57883 -24.70100 -23.76331 -23.26075 -21.54131 -19.97072 -19.72406 -18.23567 -17.99772 -17.32884 -16.66239 -16.29029 -16.21119 -15.73813 -15.47758 -15.33027 -14.88772 -14.66961 -14.13617 -14.03931 -13.86694 -13.28226 -12.88341 -12.86727 -12.47474 -12.28151 -12.22327 -12.01586 -11.87803 -11.31856 -11.03847 -10.82950 -10.70795 -10.27219 -10.17958 -8.73727 -5.13162 -0.05422 0.02669 0.66720 1.25807 1.56715 1.87342 1.97353 2.17949 3.22836 3.50901 3.62886 3.69496 3.71844 3.92811 4.02962 4.05960 4.19303 4.35427 4.42474 4.47358 4.49656 4.63705 4.71533 4.85993 4.91952 5.04704 5.06220 5.10340 5.17295 5.29625 5.32509 5.86509 6.12611 6.71141 6.85260 6.99902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.012 4.012 3 Si 0.729 3.271 4 C -0.309 4.309 5 C 0.105 3.895 6 N -0.575 5.575 7 C 0.319 3.681 8 N -0.679 5.679 9 C 0.160 3.840 10 H 0.080 0.920 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.103 3.897 14 H 0.065 0.935 15 O -0.588 6.588 16 C -0.143 4.143 17 C -0.123 4.123 18 S 0.105 5.895 19 H 0.394 0.606 20 H 0.119 0.881 21 H -0.271 1.271 22 H -0.271 1.271 23 H 0.178 0.822 24 H 0.419 0.581 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.393 0.607 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 0.489 3.959 3.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.126 4.126 3 Si 0.633 3.367 4 C -0.433 4.433 5 C -0.046 4.046 6 N -0.301 5.301 7 C -0.051 4.051 8 N -0.320 5.320 9 C 0.054 3.946 10 H 0.098 0.902 11 C -0.155 4.155 12 C -0.152 4.152 13 C 0.045 3.955 14 H 0.083 0.917 15 O -0.397 6.397 16 C -0.181 4.181 17 C -0.162 4.162 18 S 0.354 5.646 19 H 0.244 0.756 20 H 0.137 0.863 21 H -0.197 1.197 22 H -0.196 1.196 23 H 0.194 0.806 24 H 0.259 0.741 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.242 0.758 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.622 1.246 3.243 3.834 hybrid contribution -0.853 -1.124 -0.413 1.470 sum 0.769 0.122 2.830 2.935 Atomic orbital electron populations 1.86478 1.17000 1.82103 1.50232 1.24201 0.84860 1.09217 0.94311 0.94110 0.79112 0.76049 0.87427 1.25657 1.14949 0.98241 1.04403 1.21454 0.97124 0.93709 0.92340 1.66487 1.19916 1.34427 1.09306 1.23953 0.95278 0.93522 0.92382 1.44339 1.58399 1.12697 1.16562 1.21033 0.95389 0.83121 0.95093 0.90169 1.21786 0.97436 1.00759 0.95568 1.21482 0.97060 0.99581 0.97101 1.21873 0.94841 0.91473 0.87322 0.91742 1.86474 1.48473 1.57084 1.47651 1.22155 0.98801 0.99762 0.97334 1.21836 0.97582 0.99872 0.96936 1.83821 1.55142 1.10874 1.14748 0.75579 0.86348 1.19722 1.19615 0.80551 0.74109 0.88538 0.89958 0.90746 0.91728 0.75756 0.91138 0.92171 0.92725 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.46 12.88 -148.98 -1.92 -2.38 16 2 C -0.01 -0.01 2.99 71.24 0.21 0.21 16 3 Si 0.73 -0.46 31.07 68.60 2.13 1.67 16 4 C -0.31 -0.66 5.73 24.57 0.14 -0.52 16 5 C 0.10 0.49 11.24 83.54 0.94 1.43 16 6 N -0.57 -3.66 9.90 -202.03 -2.00 -5.66 16 7 C 0.32 0.93 8.06 179.32 1.45 2.37 16 8 N -0.68 0.82 4.39 -330.38 -1.45 -0.63 16 9 C 0.16 -0.36 2.91 44.99 0.13 -0.23 16 10 H 0.08 0.09 7.76 -2.39 -0.02 0.07 16 11 C -0.12 0.66 5.61 30.59 0.17 0.83 16 12 C -0.11 0.45 5.40 30.59 0.17 0.61 16 13 C 0.10 -0.33 3.47 30.59 0.11 -0.23 16 14 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 15 O -0.59 0.22 13.32 -148.98 -1.98 -1.77 16 16 C -0.14 0.45 5.39 30.59 0.16 0.61 16 17 C -0.12 0.27 5.62 30.60 0.17 0.45 16 18 S 0.10 0.04 20.59 -56.49 -1.16 -1.12 16 19 H 0.39 -2.59 8.70 -74.06 -0.64 -3.23 16 20 H 0.12 0.09 7.96 -2.39 -0.02 0.07 16 21 H -0.27 -1.14 7.11 99.48 0.71 -0.43 16 22 H -0.27 -1.38 7.11 99.48 0.71 -0.67 16 23 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 24 H 0.42 -1.68 6.99 -92.71 -0.65 -2.33 16 25 H 0.10 -0.72 8.14 -2.39 -0.02 -0.73 16 26 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 28 H 0.06 -0.23 6.51 -2.39 -0.02 -0.24 16 29 H 0.39 -2.91 9.08 -74.06 -0.67 -3.59 16 30 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.06 -0.05 7.60 -2.39 -0.02 -0.07 16 32 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: 0.00 -13.13 282.41 -3.52 -16.65 By element: Atomic # 1 Polarization: -11.53 SS G_CDS: -0.78 Total: -12.31 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 3.65 Total: 5.54 kcal Atomic # 7 Polarization: -2.84 SS G_CDS: -3.45 Total: -6.29 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -3.90 Total: -4.14 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.13 Total: 1.67 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.16 Total: -1.12 kcal Total: -13.13 -3.52 -16.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12892150_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.464 kcal (2) G-P(sol) polarization free energy of solvation -13.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds