Wall clock time and date at job start Mon Mar 8 2021 07:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33331 * 125.95218 * 2 1 4 4 C 1.50700 * 122.70958 * 0.04700 * 3 2 1 5 5 O 1.42899 * 109.47036 * 30.02245 * 4 3 2 6 6 Si 1.86302 * 109.47135 * 150.01970 * 4 3 2 7 7 N 1.32115 * 114.58076 * 180.02562 * 3 2 1 8 8 C 1.29694 * 116.86485 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94841 * 179.97438 * 8 7 3 10 10 C 1.46493 * 120.00201 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.47147 * 324.99609 * 10 9 8 12 12 C 1.53001 * 109.47726 * 84.99794 * 10 9 8 13 13 C 1.52997 * 109.47426 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47063 * 299.99736 * 13 12 10 15 15 H 1.08996 * 109.47445 * 180.02562 * 14 13 12 16 16 O 1.42906 * 109.47195 * 300.00552 * 14 13 12 17 17 C 1.52998 * 109.46992 * 60.00174 * 14 13 12 18 18 C 1.53002 * 109.47262 * 205.00228 * 10 9 8 19 19 S 1.70958 * 110.10068 * 359.97438 * 8 7 3 20 20 H 1.08996 * 109.47363 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46992 * 299.97427 * 1 2 3 22 22 H 1.09003 * 109.46820 * 59.96627 * 1 2 3 23 23 H 1.08998 * 109.47434 * 270.01967 * 4 3 2 24 24 H 0.96703 * 114.00041 * 179.97438 * 5 4 3 25 25 H 1.48496 * 110.00331 * 178.67865 * 6 4 3 26 26 H 1.48503 * 110.00268 * 300.00328 * 6 4 3 27 27 H 0.97000 * 120.00085 * 359.97438 * 9 8 7 28 28 H 1.09007 * 109.46746 * 300.00329 * 12 10 9 29 29 H 1.08993 * 109.46756 * 59.99590 * 12 10 9 30 30 H 1.08996 * 109.47334 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47186 * 59.99693 * 13 12 10 32 32 H 0.96700 * 113.98914 * 299.99511 * 16 14 13 33 33 H 1.09003 * 109.47215 * 180.02562 * 17 14 13 34 34 H 1.08996 * 109.47549 * 60.00244 * 17 14 13 35 35 H 1.09004 * 109.46813 * 299.99304 * 18 10 9 36 36 H 1.08993 * 109.47466 * 59.99682 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 0.0010 5 8 0.4820 2.5019 0.6760 6 14 2.9332 3.6146 0.8785 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4310 -0.0015 9 7 5.2384 -0.8926 -0.0027 10 6 5.5066 -2.3328 -0.0043 11 1 4.7458 -2.8447 0.5852 12 6 5.4755 -2.8559 -1.4418 13 6 5.7549 -4.3602 -1.4433 14 6 7.1337 -4.6234 -0.8346 15 1 7.3330 -5.6950 -0.8360 16 8 8.1314 -3.9526 -1.6071 17 6 7.1648 -4.1004 0.6029 18 6 6.8855 -2.5956 0.6044 19 16 2.5413 -1.4260 -0.0011 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5134 0.8902 22 1 -0.3633 0.5144 -0.8897 23 1 1.6082 2.8219 -1.0263 24 1 0.0699 3.3758 0.7152 25 1 2.4192 5.0077 0.8586 26 1 3.1235 3.1634 2.2805 27 1 5.9755 -0.2621 -0.0032 28 1 4.4930 -2.6687 -1.8753 29 1 6.2362 -2.3441 -2.0311 30 1 5.7323 -4.7329 -2.4673 31 1 4.9939 -4.8717 -0.8539 32 1 8.1689 -4.2350 -2.5312 33 1 8.1472 -4.2874 1.0365 34 1 6.4039 -4.6119 1.1923 35 1 7.6463 -2.0838 0.0149 36 1 6.9077 -2.2230 1.6284 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12892150_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:08:19 Heat of formation + Delta-G solvation = -37.823084 kcal Electronic energy + Delta-G solvation = -19152.335973 eV Core-core repulsion = 16150.455886 eV Total energy + Delta-G solvation = -3001.880087 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.08878 -40.31603 -38.02365 -37.14603 -34.77447 -32.74781 -31.85131 -30.09119 -28.69906 -25.63633 -24.53977 -23.73523 -23.01971 -21.19692 -20.10535 -19.35602 -18.28283 -17.76126 -17.23511 -17.06838 -16.40815 -16.15185 -15.77069 -15.68540 -15.31790 -14.53357 -14.19743 -14.12388 -14.06758 -13.83526 -13.55844 -13.41007 -13.22177 -13.15703 -13.01078 -12.44670 -12.38855 -12.05242 -11.84758 -11.58902 -11.38739 -10.95094 -10.72303 -10.68476 -10.45462 -10.01767 -8.61445 -4.80165 -0.02659 0.13374 0.72103 1.26111 1.58788 1.83219 1.85329 2.02183 3.07325 3.40928 3.62583 3.69944 3.88526 3.93347 4.06052 4.13680 4.18747 4.32349 4.33908 4.37915 4.40073 4.50239 4.66107 4.80951 4.83374 4.89342 4.97504 5.03337 5.07784 5.14039 5.17178 5.26613 5.30999 5.37621 5.67967 6.32605 6.62017 6.88514 6.92963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.256 4.256 3 C 0.086 3.914 4 C -0.041 4.041 5 O -0.545 6.545 6 Si 0.773 3.227 7 N -0.561 5.561 8 C 0.314 3.686 9 N -0.684 5.684 10 C 0.154 3.846 11 H 0.080 0.920 12 C -0.127 4.127 13 C -0.146 4.146 14 C 0.101 3.899 15 H 0.068 0.932 16 O -0.581 6.581 17 C -0.112 4.112 18 C -0.115 4.115 19 S 0.115 5.885 20 H 0.064 0.936 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.398 0.602 25 H -0.271 1.271 26 H -0.322 1.322 27 H 0.415 0.585 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.390 0.610 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -3.606 -2.773 4.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.378 4.378 3 C -0.043 4.043 4 C -0.153 4.153 5 O -0.355 6.355 6 Si 0.679 3.321 7 N -0.289 5.289 8 C -0.058 4.058 9 N -0.323 5.323 10 C 0.050 3.950 11 H 0.098 0.902 12 C -0.166 4.166 13 C -0.184 4.184 14 C 0.042 3.958 15 H 0.086 0.914 16 O -0.389 6.389 17 C -0.150 4.150 18 C -0.153 4.153 19 S 0.364 5.636 20 H 0.083 0.917 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.119 0.881 24 H 0.249 0.751 25 H -0.198 1.198 26 H -0.250 1.250 27 H 0.254 0.746 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.519 -4.262 -1.487 4.763 hybrid contribution -1.149 1.122 -0.285 1.631 sum 0.371 -3.140 -1.772 3.625 Atomic orbital electron populations 1.20047 0.85715 1.01781 1.03518 1.25409 1.02243 0.93241 1.16952 1.19100 0.86789 0.96024 1.02407 1.24012 0.92117 0.96724 1.02479 1.86509 1.33010 1.36647 1.79361 0.93015 0.86684 0.73856 0.78586 1.65647 1.17058 1.17334 1.28907 1.23463 0.92798 0.91268 0.98265 1.44207 1.01024 1.07761 1.79346 1.21254 0.98668 0.77898 0.97203 0.90210 1.21892 1.01922 0.96756 0.96037 1.22214 0.98114 0.95336 1.02770 1.21852 0.86846 0.95747 0.91318 0.91442 1.86487 1.57781 1.67685 1.26989 1.21572 1.03325 0.94771 0.95303 1.21620 0.94709 0.97722 1.01239 1.83731 0.95840 1.09878 1.74140 0.91730 0.90228 0.90563 0.88123 0.75057 1.19798 1.25032 0.74586 0.92346 0.91169 0.90159 0.89966 0.76052 0.90750 0.89065 0.90829 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.20 8.91 71.24 0.63 0.44 16 2 C -0.26 -1.90 6.50 24.58 0.16 -1.74 16 3 C 0.09 0.74 5.95 41.41 0.25 0.98 16 4 C -0.04 -0.16 2.93 71.24 0.21 0.05 16 5 O -0.55 -1.45 9.80 -148.98 -1.46 -2.91 16 6 Si 0.77 3.58 32.08 68.60 2.20 5.78 16 7 N -0.56 -5.01 8.95 -189.86 -1.70 -6.71 16 8 C 0.31 1.89 8.22 179.32 1.47 3.36 16 9 N -0.68 -0.91 5.23 -330.40 -1.73 -2.64 16 10 C 0.15 -0.31 2.40 44.99 0.11 -0.21 16 11 H 0.08 -0.16 7.26 -2.38 -0.02 -0.17 16 12 C -0.13 0.34 5.36 30.59 0.16 0.51 16 13 C -0.15 0.87 5.64 30.59 0.17 1.04 16 14 C 0.10 -0.50 3.77 30.59 0.12 -0.39 16 15 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 16 O -0.58 1.45 11.97 -148.98 -1.78 -0.33 16 17 C -0.11 0.50 5.67 30.61 0.17 0.67 16 18 C -0.11 0.34 5.25 30.61 0.16 0.50 16 19 S 0.12 0.51 21.69 -56.49 -1.23 -0.72 16 20 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 21 H 0.08 0.40 6.74 -2.39 -0.02 0.39 16 22 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 23 H 0.10 -0.02 7.96 -2.39 -0.02 -0.04 16 24 H 0.40 -2.34 8.74 -74.06 -0.65 -2.98 16 25 H -0.27 -1.48 7.11 99.48 0.71 -0.77 16 26 H -0.32 -4.68 7.11 99.48 0.71 -3.98 16 27 H 0.42 0.02 8.73 -92.71 -0.81 -0.78 16 28 H 0.06 -0.05 8.04 -2.38 -0.02 -0.07 16 29 H 0.07 -0.05 7.68 -2.39 -0.02 -0.07 16 30 H 0.08 -0.59 8.14 -2.39 -0.02 -0.60 16 31 H 0.08 -0.57 8.14 -2.38 -0.02 -0.59 16 32 H 0.39 -3.50 9.08 -74.06 -0.67 -4.17 16 33 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.07 -0.06 7.68 -2.38 -0.02 -0.08 16 36 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: 0.00 -14.53 301.58 -3.06 -17.58 By element: Atomic # 1 Polarization: -14.30 SS G_CDS: -0.98 Total: -15.28 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 3.62 Total: 5.22 kcal Atomic # 7 Polarization: -5.92 SS G_CDS: -3.43 Total: -9.35 kcal Atomic # 8 Polarization: 0.01 SS G_CDS: -3.24 Total: -3.24 kcal Atomic # 14 Polarization: 3.58 SS G_CDS: 2.20 Total: 5.78 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -1.23 Total: -0.72 kcal Total: -14.53 -3.06 -17.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12892150_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.239 kcal (2) G-P(sol) polarization free energy of solvation -14.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds