Wall clock time and date at job start Mon Mar 8 2021 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99546 * 2 1 4 4 C 1.53006 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84571 * 43.80881 * 4 3 2 6 6 C 1.53780 * 113.61530 * 175.00171 * 4 3 2 7 7 C 1.53775 * 87.08036 * 139.98180 * 6 4 3 8 8 H 1.09000 * 113.61602 * 89.19691 * 7 6 4 9 9 N 1.46499 * 113.61832 * 220.01662 * 7 6 4 10 10 C 1.38403 * 120.00292 * 204.99735 * 9 7 6 11 11 N 1.32497 * 119.21848 * 179.97438 * 10 9 7 12 12 C 1.32269 * 120.74113 * 180.02562 * 11 10 9 13 13 C 1.38602 * 119.19930 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.72253 * 179.97438 * 13 12 11 15 15 O 1.42898 * 109.47171 * 65.00111 * 14 13 12 16 16 Si 1.86303 * 109.47044 * 184.99854 * 14 13 12 17 17 C 1.38603 * 118.55917 * 0.25223 * 13 12 11 18 18 N 1.32279 * 119.19672 * 359.50955 * 17 13 12 19 19 C 1.53775 * 113.61479 * 272.50312 * 4 3 2 20 20 H 1.08993 * 109.47232 * 299.99570 * 1 2 3 21 21 H 1.09005 * 109.47179 * 59.99968 * 1 2 3 22 22 H 1.09010 * 109.46685 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46980 * 60.00616 * 3 2 1 24 24 H 1.08997 * 109.47665 * 300.00197 * 3 2 1 25 25 H 1.09001 * 113.60936 * 25.43473 * 6 4 3 26 26 H 1.09000 * 113.69108 * 254.54436 * 6 4 3 27 27 H 0.97004 * 119.99552 * 25.00410 * 9 7 6 28 28 H 1.08002 * 120.40224 * 180.02562 * 12 11 10 29 29 H 1.09002 * 109.47152 * 304.99895 * 14 13 12 30 30 H 0.96698 * 113.99898 * 59.99612 * 15 14 13 31 31 H 1.48501 * 109.99761 * 58.68101 * 16 14 13 32 32 H 1.48504 * 109.99730 * 180.02562 * 16 14 13 33 33 H 1.07998 * 120.40406 * 179.72612 * 17 13 12 34 34 H 1.08996 * 113.61522 * 105.46647 * 19 4 3 35 35 H 1.09002 * 113.61455 * 334.56352 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9004 0.4286 -0.6944 6 6 4.2604 2.5355 -0.1221 7 6 5.2671 1.9997 0.9095 8 1 6.1072 1.4671 0.4639 9 7 5.6857 2.9994 1.8952 10 6 6.9065 2.8720 2.5346 11 7 7.2698 3.7855 3.4229 12 6 8.4300 3.6936 4.0513 13 6 9.2686 2.6265 3.7702 14 6 10.5985 2.4883 4.4656 15 8 10.3857 2.2729 5.8621 16 14 11.5269 1.0411 3.7484 17 6 8.8602 1.6922 2.8314 18 7 7.6851 1.8405 2.2424 19 6 4.1441 1.0751 1.4086 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.6886 1.8463 0.8901 24 1 1.6885 1.8465 -0.8899 25 1 3.6735 3.3802 0.2385 26 1 4.6952 2.7113 -1.1060 27 1 5.1071 3.7507 2.0997 28 1 8.7205 4.4411 4.7747 29 1 11.1795 3.3995 4.3229 30 1 9.8742 1.4775 6.0639 31 1 11.7267 1.2381 2.2901 32 1 12.8400 0.8938 4.4262 33 1 9.4921 0.8514 2.5863 34 1 4.4848 0.0707 1.6599 35 1 3.5255 1.5207 2.1876 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12906262_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:42 Heat of formation + Delta-G solvation = 10.764279 kcal Electronic energy + Delta-G solvation = -18065.826731 eV Core-core repulsion = 15067.013012 eV Total energy + Delta-G solvation = -2998.813719 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.08077 -40.54658 -38.46362 -37.95188 -35.56937 -34.65809 -32.22836 -29.62633 -27.15458 -26.82461 -26.31463 -25.81942 -23.65315 -22.62583 -20.83468 -19.27050 -18.74385 -18.04937 -17.44522 -16.90010 -16.67593 -16.58032 -16.21871 -16.01605 -15.56931 -15.48794 -15.23576 -14.55340 -14.17506 -14.04996 -13.56721 -13.33453 -13.14247 -13.08552 -12.44777 -12.21305 -12.05866 -11.85939 -11.81807 -11.73941 -11.43518 -11.14349 -10.61163 -10.56938 -9.99042 -9.07040 -5.10071 0.08920 0.18608 1.23453 1.57350 1.83408 1.93331 2.73045 2.84394 3.16054 3.41731 3.42671 3.53287 3.63333 3.72906 3.78918 3.79628 3.87180 4.20702 4.25452 4.31159 4.39510 4.47842 4.50782 4.51139 4.60982 4.68398 4.72617 4.76027 4.76993 5.01374 5.03749 5.15939 5.40844 5.81997 6.03265 6.18123 6.43572 6.52511 7.31948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.106 4.106 5 H 0.105 0.895 6 C -0.140 4.140 7 C 0.138 3.862 8 H 0.123 0.877 9 N -0.684 5.684 10 C 0.568 3.432 11 N -0.571 5.571 12 C 0.223 3.777 13 C -0.296 4.296 14 C -0.046 4.046 15 O -0.541 6.541 16 Si 0.680 3.320 17 C 0.200 3.800 18 N -0.562 5.562 19 C -0.144 4.144 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.087 0.913 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.414 0.586 28 H 0.170 0.830 29 H 0.115 0.885 30 H 0.379 0.621 31 H -0.255 1.255 32 H -0.251 1.251 33 H 0.166 0.834 34 H 0.077 0.923 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -1.214 -0.767 2.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.125 4.125 5 H 0.123 0.877 6 C -0.178 4.178 7 C 0.033 3.967 8 H 0.140 0.860 9 N -0.319 5.319 10 C 0.211 3.789 11 N -0.292 5.292 12 C 0.055 3.945 13 C -0.304 4.304 14 C -0.158 4.158 15 O -0.346 6.346 16 Si 0.582 3.418 17 C 0.033 3.967 18 N -0.284 5.284 19 C -0.183 4.183 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.106 0.894 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.252 0.748 28 H 0.187 0.813 29 H 0.133 0.867 30 H 0.226 0.774 31 H -0.180 1.180 32 H -0.175 1.175 33 H 0.183 0.817 34 H 0.095 0.905 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.823 -1.134 -1.766 2.780 hybrid contribution 0.151 1.131 0.490 1.242 sum -1.672 -0.003 -1.276 2.103 Atomic orbital electron populations 1.22765 0.80814 1.03011 1.00015 1.87895 1.19817 1.27777 1.95405 1.22517 0.92834 0.84919 1.00220 1.22313 0.93105 0.98292 0.98757 0.87690 1.23405 0.97190 0.97198 1.00055 1.22563 0.96273 0.89435 0.88451 0.85969 1.44238 1.15748 1.29189 1.42751 1.19445 0.87244 0.85500 0.86669 1.67996 1.19598 1.29530 1.12082 1.22831 0.86133 0.93790 0.91750 1.21703 1.01854 1.01184 1.05649 1.24698 0.96414 1.09414 0.85288 1.86509 1.77399 1.49622 1.21058 0.94990 0.82423 0.84828 0.79598 1.22765 0.90390 0.95359 0.88223 1.67897 1.06565 1.23445 1.30446 1.23570 0.97245 1.00969 0.96542 0.94040 0.94007 0.89445 0.93169 0.93056 0.89349 0.90049 0.74801 0.81329 0.86747 0.77362 1.17987 1.17529 0.81694 0.90451 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 101.05 1.11 1.10 16 2 O -0.39 -0.72 10.70 -35.23 -0.38 -1.09 16 3 C 0.07 -0.03 5.78 37.16 0.21 0.19 16 4 C -0.11 0.11 4.01 -89.81 -0.36 -0.25 16 5 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 6 C -0.14 0.28 7.39 -25.92 -0.19 0.09 16 7 C 0.14 -0.08 4.25 -67.12 -0.29 -0.36 16 8 H 0.12 0.04 7.37 -51.93 -0.38 -0.34 16 9 N -0.68 -0.38 5.50 -55.00 -0.30 -0.68 16 10 C 0.57 1.50 8.43 -322.80 -2.72 -1.21 16 11 N -0.57 -1.68 10.46 -13.93 -0.15 -1.82 16 12 C 0.22 0.28 10.99 -17.23 -0.19 0.09 16 13 C -0.30 -0.01 5.36 -104.35 -0.56 -0.57 16 14 C -0.05 0.05 2.83 36.01 0.10 0.15 16 15 O -0.54 0.31 12.85 -35.23 -0.45 -0.14 16 16 Si 0.68 -1.24 29.88 -169.99 -5.08 -6.31 16 17 C 0.20 0.07 9.92 -17.22 -0.17 -0.10 16 18 N -0.56 -1.30 9.13 -13.93 -0.13 -1.42 16 19 C -0.14 0.07 7.43 -25.92 -0.19 -0.12 16 20 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 21 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 22 H 0.09 -0.11 8.14 -51.92 -0.42 -0.54 16 23 H 0.05 -0.05 7.84 -51.93 -0.41 -0.46 16 24 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 25 H 0.09 -0.24 8.08 -51.93 -0.42 -0.66 16 26 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 27 H 0.41 -0.25 8.84 -40.82 -0.36 -0.61 16 28 H 0.17 -0.09 8.06 -52.49 -0.42 -0.51 16 29 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.38 -1.58 8.70 45.56 0.40 -1.19 16 31 H -0.26 -0.14 7.11 56.52 0.40 0.26 16 32 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 33 H 0.17 -0.39 5.06 -52.49 -0.27 -0.65 16 34 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.08 -0.03 7.89 -51.93 -0.41 -0.44 16 LS Contribution 296.94 15.07 4.47 4.47 Total: 0.00 -6.48 296.94 -10.09 -16.57 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: -4.84 Total: -8.56 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -3.24 Total: -1.01 kcal Atomic # 7 Polarization: -3.35 SS G_CDS: -0.58 Total: -3.93 kcal Atomic # 8 Polarization: -0.40 SS G_CDS: -0.83 Total: -1.23 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.08 Total: -6.31 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -6.48 -10.09 -16.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12906262_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.336 kcal (2) G-P(sol) polarization free energy of solvation -6.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds