Wall clock time and date at job start Mon Mar 8 2021 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99546 * 2 1 4 4 C 1.53006 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84571 * 43.80881 * 4 3 2 6 6 C 1.53780 * 113.61530 * 175.00171 * 4 3 2 7 7 C 1.53775 * 87.08036 * 139.98180 * 6 4 3 8 8 H 1.09000 * 113.61602 * 89.19691 * 7 6 4 9 9 N 1.46499 * 113.61832 * 220.01662 * 7 6 4 10 10 C 1.38403 * 120.00292 * 204.99735 * 9 7 6 11 11 N 1.32497 * 119.21848 * 179.97438 * 10 9 7 12 12 C 1.32269 * 120.74113 * 180.02562 * 11 10 9 13 13 C 1.38602 * 119.19930 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.72253 * 179.97438 * 13 12 11 15 15 O 1.42898 * 109.47171 * 65.00111 * 14 13 12 16 16 Si 1.86303 * 109.47044 * 184.99854 * 14 13 12 17 17 C 1.38603 * 118.55917 * 0.25223 * 13 12 11 18 18 N 1.32279 * 119.19672 * 359.50955 * 17 13 12 19 19 C 1.53775 * 113.61479 * 272.50312 * 4 3 2 20 20 H 1.08993 * 109.47232 * 299.99570 * 1 2 3 21 21 H 1.09005 * 109.47179 * 59.99968 * 1 2 3 22 22 H 1.09010 * 109.46685 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46980 * 60.00616 * 3 2 1 24 24 H 1.08997 * 109.47665 * 300.00197 * 3 2 1 25 25 H 1.09001 * 113.60936 * 25.43473 * 6 4 3 26 26 H 1.09000 * 113.69108 * 254.54436 * 6 4 3 27 27 H 0.97004 * 119.99552 * 25.00410 * 9 7 6 28 28 H 1.08002 * 120.40224 * 180.02562 * 12 11 10 29 29 H 1.09002 * 109.47152 * 304.99895 * 14 13 12 30 30 H 0.96698 * 113.99898 * 59.99612 * 15 14 13 31 31 H 1.48501 * 109.99761 * 58.68101 * 16 14 13 32 32 H 1.48504 * 109.99730 * 180.02562 * 16 14 13 33 33 H 1.07998 * 120.40406 * 179.72612 * 17 13 12 34 34 H 1.08996 * 113.61522 * 105.46647 * 19 4 3 35 35 H 1.09002 * 113.61455 * 334.56352 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9004 0.4286 -0.6944 6 6 4.2604 2.5355 -0.1221 7 6 5.2671 1.9997 0.9095 8 1 6.1072 1.4671 0.4639 9 7 5.6857 2.9994 1.8952 10 6 6.9065 2.8720 2.5346 11 7 7.2698 3.7855 3.4229 12 6 8.4300 3.6936 4.0513 13 6 9.2686 2.6265 3.7702 14 6 10.5985 2.4883 4.4656 15 8 10.3857 2.2729 5.8621 16 14 11.5269 1.0411 3.7484 17 6 8.8602 1.6922 2.8314 18 7 7.6851 1.8405 2.2424 19 6 4.1441 1.0751 1.4086 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.6886 1.8463 0.8901 24 1 1.6885 1.8465 -0.8899 25 1 3.6735 3.3802 0.2385 26 1 4.6952 2.7113 -1.1060 27 1 5.1071 3.7507 2.0997 28 1 8.7205 4.4411 4.7747 29 1 11.1795 3.3995 4.3229 30 1 9.8742 1.4775 6.0639 31 1 11.7267 1.2381 2.2901 32 1 12.8400 0.8938 4.4262 33 1 9.4921 0.8514 2.5863 34 1 4.4848 0.0707 1.6599 35 1 3.5255 1.5207 2.1876 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12906262_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:41 Heat of formation + Delta-G solvation = 12.984129 kcal Electronic energy + Delta-G solvation = -18065.730471 eV Core-core repulsion = 15067.013012 eV Total energy + Delta-G solvation = -2998.717459 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.13016 -40.50282 -38.46094 -37.90838 -35.56860 -34.73634 -32.23911 -29.57758 -27.12012 -26.76456 -26.27531 -25.86231 -23.64964 -22.62749 -20.78372 -19.27953 -18.77292 -18.01330 -17.42454 -16.86511 -16.65631 -16.58127 -16.18708 -16.02360 -15.54805 -15.49101 -15.22531 -14.56621 -14.13771 -14.06429 -13.45950 -13.30490 -13.07175 -13.05246 -12.40070 -12.25819 -12.00865 -11.91337 -11.79750 -11.76493 -11.39193 -11.12177 -10.59064 -10.54163 -10.04827 -9.09497 -4.98773 0.04086 0.12609 1.32619 1.64932 1.82876 1.99283 2.75897 2.81594 3.15761 3.49067 3.54831 3.60371 3.66414 3.71646 3.81138 3.84777 3.93455 4.23518 4.32946 4.39141 4.48317 4.53825 4.57010 4.59467 4.70983 4.73883 4.78473 4.82564 4.85201 5.05365 5.08824 5.18149 5.44049 5.78551 6.03368 6.23237 6.40395 6.78654 7.25987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.069 3.931 4 C -0.103 4.103 5 H 0.100 0.900 6 C -0.127 4.127 7 C 0.138 3.862 8 H 0.113 0.887 9 N -0.680 5.680 10 C 0.551 3.449 11 N -0.591 5.591 12 C 0.211 3.789 13 C -0.288 4.288 14 C -0.047 4.047 15 O -0.555 6.555 16 Si 0.767 3.233 17 C 0.195 3.805 18 N -0.577 5.577 19 C -0.142 4.142 20 H 0.047 0.953 21 H 0.049 0.951 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.418 0.582 28 H 0.182 0.818 29 H 0.114 0.886 30 H 0.395 0.605 31 H -0.284 1.284 32 H -0.296 1.296 33 H 0.189 0.811 34 H 0.065 0.935 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -1.158 -0.846 2.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.007 4.007 4 C -0.122 4.122 5 H 0.118 0.882 6 C -0.165 4.165 7 C 0.033 3.967 8 H 0.131 0.869 9 N -0.316 5.316 10 C 0.195 3.805 11 N -0.314 5.314 12 C 0.044 3.956 13 C -0.297 4.297 14 C -0.159 4.159 15 O -0.362 6.362 16 Si 0.673 3.327 17 C 0.028 3.972 18 N -0.300 5.300 19 C -0.181 4.181 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.110 0.890 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.257 0.743 28 H 0.199 0.801 29 H 0.131 0.869 30 H 0.244 0.756 31 H -0.211 1.211 32 H -0.223 1.223 33 H 0.206 0.794 34 H 0.084 0.916 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.050 -1.078 -1.835 2.955 hybrid contribution 0.250 1.108 0.549 1.262 sum -1.800 0.030 -1.286 2.213 Atomic orbital electron populations 1.22887 0.79868 1.03597 1.00722 1.87856 1.21057 1.29099 1.95576 1.22623 0.92903 0.84323 1.00901 1.22268 0.92994 0.98787 0.98131 0.88211 1.23344 0.96370 0.96947 0.99857 1.22547 0.96073 0.89428 0.88643 0.86942 1.44305 1.15285 1.29407 1.42594 1.19716 0.87962 0.85783 0.87078 1.68009 1.20511 1.30088 1.12772 1.23145 0.86011 0.94524 0.91917 1.21769 1.01962 1.00615 1.05310 1.24806 0.95839 1.09978 0.85239 1.86478 1.77803 1.50886 1.21058 0.93951 0.79450 0.83118 0.76162 1.23194 0.90133 0.96010 0.87873 1.67945 1.07323 1.23610 1.31092 1.23529 0.97343 1.00307 0.96919 0.93401 0.93204 0.89032 0.92585 0.92191 0.88197 0.89430 0.74334 0.80144 0.86898 0.75558 1.21055 1.22314 0.79426 0.91621 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.63 10.70 -148.98 -1.59 -3.22 16 3 C 0.07 -0.06 5.78 71.98 0.42 0.35 16 4 C -0.10 0.19 4.01 -10.27 -0.04 0.15 16 5 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 6 C -0.13 0.55 7.39 31.12 0.23 0.78 16 7 C 0.14 -0.10 4.25 45.52 0.19 0.10 16 8 H 0.11 0.17 7.37 -2.39 -0.02 0.15 16 9 N -0.68 -1.08 5.50 -327.93 -1.80 -2.88 16 10 C 0.55 3.25 8.43 261.48 2.20 5.45 16 11 N -0.59 -3.82 10.46 -197.99 -2.07 -5.89 16 12 C 0.21 0.58 10.99 84.71 0.93 1.51 16 13 C -0.29 0.02 5.36 -19.69 -0.11 -0.08 16 14 C -0.05 0.12 2.83 71.24 0.20 0.32 16 15 O -0.55 0.98 12.85 -148.98 -1.91 -0.93 16 16 Si 0.77 -3.02 29.88 68.60 2.05 -0.97 16 17 C 0.20 0.10 9.92 84.71 0.84 0.94 16 18 N -0.58 -2.90 9.13 -197.98 -1.81 -4.70 16 19 C -0.14 0.05 7.43 31.12 0.23 0.29 16 20 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 21 H 0.05 -0.15 8.14 -2.38 -0.02 -0.17 16 22 H 0.09 -0.23 8.14 -2.38 -0.02 -0.25 16 23 H 0.06 -0.13 7.84 -2.39 -0.02 -0.15 16 24 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.10 -0.64 8.08 -2.39 -0.02 -0.66 16 26 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.42 -0.35 8.84 -92.71 -0.82 -1.17 16 28 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 29 H 0.11 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.39 -3.64 8.70 -74.06 -0.64 -4.28 16 31 H -0.28 -0.27 7.11 99.48 0.71 0.44 16 32 H -0.30 -1.09 7.11 99.48 0.71 -0.39 16 33 H 0.19 -1.02 5.06 -2.91 -0.01 -1.04 16 34 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.08 -0.01 7.89 -2.39 -0.02 -0.03 16 Total: 0.00 -15.25 296.94 -1.11 -16.36 By element: Atomic # 1 Polarization: -8.46 SS G_CDS: -0.32 Total: -8.78 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 6.35 Total: 11.03 kcal Atomic # 7 Polarization: -7.80 SS G_CDS: -5.68 Total: -13.48 kcal Atomic # 8 Polarization: -0.65 SS G_CDS: -3.51 Total: -4.16 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.05 Total: -0.97 kcal Total: -15.25 -1.11 -16.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12906262_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.343 kcal (2) G-P(sol) polarization free energy of solvation -15.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds