Wall clock time and date at job start Mon Mar 8 2021 05:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00333 * 2 1 4 4 C 1.52992 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.90752 * 316.24432 * 4 3 2 6 6 C 1.53784 * 113.61673 * 87.49801 * 4 3 2 7 7 C 1.53778 * 87.08081 * 139.98135 * 6 4 3 8 8 H 1.08999 * 113.69218 * 89.12660 * 7 6 4 9 9 N 1.46504 * 113.61207 * 220.01967 * 7 6 4 10 10 C 1.39002 * 119.99966 * 252.49437 * 9 7 6 11 11 N 1.32393 * 119.70530 * 179.73191 * 10 9 7 12 12 C 1.31977 * 121.62209 * 179.71796 * 11 10 9 13 13 C 1.38026 * 120.85598 * 0.55366 * 12 11 10 14 14 C 1.50694 * 120.33507 * 179.74734 * 13 12 11 15 15 O 1.42908 * 109.46862 * 119.98564 * 14 13 12 16 16 Si 1.86294 * 109.47477 * 359.97438 * 14 13 12 17 17 C 1.38890 * 119.32563 * 359.73392 * 13 12 11 18 18 C 1.38294 * 118.50863 * 359.97438 * 17 13 12 19 19 C 1.53778 * 87.08449 * 334.56700 * 7 6 4 20 20 H 1.08991 * 109.46902 * 60.00377 * 1 2 3 21 21 H 1.08997 * 109.47142 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47087 * 300.00657 * 1 2 3 23 23 H 1.08996 * 109.47230 * 59.99343 * 3 2 1 24 24 H 1.09007 * 109.46260 * 299.99608 * 3 2 1 25 25 H 1.08993 * 113.61313 * 254.52732 * 6 4 3 26 26 H 1.09000 * 113.61578 * 25.43464 * 6 4 3 27 27 H 0.97001 * 119.99776 * 72.50291 * 9 7 6 28 28 H 1.07998 * 119.57356 * 180.28807 * 12 11 10 29 29 H 1.09002 * 109.47528 * 239.98087 * 14 13 12 30 30 H 0.96703 * 113.99411 * 299.99878 * 15 14 13 31 31 H 1.48504 * 109.99854 * 58.67421 * 16 14 13 32 32 H 1.48498 * 110.00491 * 179.97438 * 16 14 13 33 33 H 1.07997 * 120.74347 * 179.97438 * 17 13 12 34 34 H 1.07998 * 120.45273 * 180.02562 * 18 17 13 35 35 H 1.08998 * 113.61879 * 270.88747 * 19 7 6 36 36 H 1.08997 * 113.69304 * 139.98833 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9014 0.4280 0.6935 6 6 4.1442 1.0749 -1.4086 7 6 5.2672 1.9993 -0.9096 8 1 6.1073 1.4667 -0.4639 9 7 5.6858 2.9991 -1.8953 10 6 6.9119 2.8711 -2.5374 11 7 7.2820 3.7751 -3.4310 12 6 8.4400 3.6937 -4.0590 13 6 9.3073 2.6487 -3.8120 14 6 10.6241 2.5643 -4.5399 15 8 11.6942 2.5908 -3.5932 16 14 10.7858 4.0120 -5.7011 17 6 8.9542 1.6761 -2.8856 18 6 7.7371 1.7913 -2.2390 19 6 4.2605 2.5352 0.1220 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6886 1.8464 0.8899 24 1 1.6887 1.8462 -0.8901 25 1 4.4848 0.0705 -1.6599 26 1 3.5257 1.5205 -2.1877 27 1 5.1073 3.7504 -2.0997 28 1 8.7106 4.4522 -4.7786 29 1 10.6657 1.6357 -5.1093 30 1 11.7191 3.3906 -3.0501 31 1 10.6985 5.2849 -4.9411 32 1 12.0806 3.9408 -6.4247 33 1 9.6152 0.8484 -2.6749 34 1 7.4313 1.0530 -1.5125 35 1 3.6737 3.3801 -0.2386 36 1 4.6938 2.7103 1.1067 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12906262_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:43 Heat of formation + Delta-G solvation = -3.239548 kcal Electronic energy + Delta-G solvation = -17915.132716 eV Core-core repulsion = 14981.137657 eV Total energy + Delta-G solvation = -2933.995060 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52101 -40.39380 -38.47377 -37.92105 -35.41111 -33.40222 -31.43947 -29.49234 -27.06902 -26.70148 -26.12280 -24.88144 -23.51437 -22.11122 -20.66213 -18.75579 -18.52343 -17.75966 -17.31614 -16.85922 -16.52429 -16.38987 -16.21315 -16.12827 -15.32214 -15.23624 -15.05248 -14.38481 -14.03215 -14.00843 -13.47688 -13.40867 -13.10291 -13.01154 -12.52320 -12.31358 -12.07465 -11.95641 -11.73344 -11.39469 -11.04061 -10.75992 -10.59770 -10.53206 -10.40484 -8.68054 -4.90856 0.22529 0.40270 1.34258 1.61046 1.96691 2.11384 2.78879 2.83779 3.44357 3.48001 3.59442 3.61684 3.78714 3.80856 3.89115 4.00874 4.08283 4.30750 4.34547 4.39303 4.47618 4.51179 4.58510 4.61623 4.72072 4.76165 4.76779 4.81665 4.84421 5.01162 5.04984 5.08780 5.27170 5.37761 5.57560 6.04623 6.22069 6.50414 6.55921 7.14749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.068 3.932 4 C -0.105 4.105 5 H 0.102 0.898 6 C -0.145 4.145 7 C 0.130 3.870 8 H 0.118 0.882 9 N -0.708 5.708 10 C 0.395 3.605 11 N -0.565 5.565 12 C 0.146 3.854 13 C -0.235 4.235 14 C -0.063 4.063 15 O -0.549 6.549 16 Si 0.757 3.243 17 C -0.012 4.012 18 C -0.243 4.243 19 C -0.127 4.127 20 H 0.047 0.953 21 H 0.091 0.909 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.407 0.593 28 H 0.167 0.833 29 H 0.125 0.875 30 H 0.385 0.615 31 H -0.284 1.284 32 H -0.300 1.300 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 -0.095 1.119 3.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.009 4.009 4 C -0.124 4.124 5 H 0.120 0.880 6 C -0.184 4.184 7 C 0.025 3.975 8 H 0.136 0.864 9 N -0.338 5.338 10 C 0.159 3.841 11 N -0.283 5.283 12 C -0.011 4.011 13 C -0.240 4.240 14 C -0.173 4.173 15 O -0.357 6.357 16 Si 0.662 3.338 17 C -0.038 4.038 18 C -0.268 4.268 19 C -0.165 4.165 20 H 0.066 0.934 21 H 0.110 0.890 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.243 0.757 28 H 0.184 0.816 29 H 0.143 0.857 30 H 0.234 0.766 31 H -0.211 1.211 32 H -0.228 1.228 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.114 0.886 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.565 0.414 0.607 3.640 hybrid contribution 0.526 0.023 1.146 1.261 sum -3.039 0.437 1.753 3.535 Atomic orbital electron populations 1.22881 0.79899 1.03596 1.00700 1.87850 1.21029 1.29106 1.95570 1.22629 0.93155 0.84300 1.00779 1.22306 0.92874 0.98892 0.98321 0.88001 1.23581 0.97608 1.00424 0.96820 1.22633 0.96161 0.89762 0.88948 0.86433 1.44630 1.16670 1.29278 1.43271 1.18707 0.87133 0.89584 0.88717 1.67171 1.19646 1.29629 1.11867 1.22466 0.87920 0.95644 0.95083 1.20970 0.99729 0.98984 1.04339 1.24904 0.83456 1.12873 0.96067 1.86562 1.50487 1.46034 1.52604 0.94228 0.84183 0.73968 0.81386 1.21398 0.94301 0.96829 0.91249 1.21676 0.96777 1.01328 1.06990 1.23316 0.96482 0.96810 0.99937 0.93434 0.89018 0.93240 0.92351 0.92743 0.91179 0.89977 0.75657 0.81602 0.85707 0.76641 1.21083 1.22824 0.83688 0.83381 0.88608 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.35 10.70 -148.98 -1.59 -2.95 16 3 C 0.07 -0.11 5.78 71.98 0.42 0.31 16 4 C -0.10 0.37 4.01 -10.27 -0.04 0.33 16 5 H 0.10 -0.30 8.14 -2.39 -0.02 -0.31 16 6 C -0.15 0.39 7.43 31.12 0.23 0.62 16 7 C 0.13 -0.52 4.03 45.51 0.18 -0.34 16 8 H 0.12 -0.61 6.10 -2.39 -0.01 -0.63 16 9 N -0.71 0.33 5.53 -322.04 -1.78 -1.45 16 10 C 0.39 1.48 7.65 133.07 1.02 2.49 16 11 N -0.57 -3.47 10.39 -193.26 -2.01 -5.48 16 12 C 0.15 0.43 9.84 84.62 0.83 1.27 16 13 C -0.23 -0.35 5.40 -19.76 -0.11 -0.46 16 14 C -0.06 0.01 2.84 71.23 0.20 0.21 16 15 O -0.55 -1.46 12.78 -148.98 -1.90 -3.36 16 16 Si 0.76 -0.88 29.82 68.60 2.05 1.17 16 17 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 18 C -0.24 -0.37 9.29 22.50 0.21 -0.16 16 19 C -0.13 0.76 7.39 31.12 0.23 0.99 16 20 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 21 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 22 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.05 -0.15 7.84 -2.38 -0.02 -0.16 16 25 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.08 -0.12 7.89 -2.39 -0.02 -0.14 16 27 H 0.41 -0.53 8.85 -92.71 -0.82 -1.35 16 28 H 0.17 -0.18 4.88 -2.91 -0.01 -0.19 16 29 H 0.13 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.38 -0.93 8.70 -74.06 -0.64 -1.58 16 31 H -0.28 -0.86 7.11 99.48 0.71 -0.15 16 32 H -0.30 -1.88 7.11 99.48 0.71 -1.18 16 33 H 0.15 -0.15 8.06 -2.91 -0.02 -0.17 16 34 H 0.15 -0.35 6.03 -2.91 -0.02 -0.37 16 35 H 0.10 -0.66 8.08 -2.39 -0.02 -0.68 16 36 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: 0.00 -13.22 299.25 -0.93 -14.15 By element: Atomic # 1 Polarization: -8.44 SS G_CDS: -0.33 Total: -8.77 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 4.64 Total: 6.69 kcal Atomic # 7 Polarization: -3.14 SS G_CDS: -3.79 Total: -6.93 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -3.50 Total: -6.31 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: 2.05 Total: 1.17 kcal Total: -13.22 -0.93 -14.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12906262_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.909 kcal (2) G-P(sol) polarization free energy of solvation -13.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds