Wall clock time and date at job start Mon Mar 8 2021 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42904 * 113.99677 * 2 1 4 4 C 1.53001 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.85041 * 43.79853 * 4 3 2 6 6 C 1.53774 * 113.61751 * 174.99795 * 4 3 2 7 7 C 1.53779 * 87.08060 * 139.97711 * 6 4 3 8 8 H 1.08998 * 113.61201 * 89.20439 * 7 6 4 9 9 N 1.46504 * 113.61705 * 220.01743 * 7 6 4 10 10 C 1.38608 * 120.00174 * 203.47283 * 9 7 6 11 11 N 1.29677 * 124.94973 * 359.97438 * 10 9 7 12 12 C 1.32124 * 116.86481 * 180.02562 * 11 10 9 13 13 C 1.33320 * 114.58045 * 0.02562 * 12 11 10 14 14 C 1.50700 * 125.95274 * 180.02562 * 13 12 11 15 15 O 1.42894 * 109.47431 * 64.99295 * 14 13 12 16 16 Si 1.86303 * 109.47163 * 184.99733 * 14 13 12 17 17 S 1.70974 * 124.94672 * 179.97438 * 10 9 7 18 18 C 1.53775 * 87.17672 * 334.60991 * 7 6 4 19 19 H 1.08996 * 109.46920 * 60.00006 * 1 2 3 20 20 H 1.08993 * 109.47071 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46937 * 300.00470 * 1 2 3 22 22 H 1.08998 * 109.47316 * 59.99672 * 3 2 1 23 23 H 1.09004 * 109.47166 * 299.99694 * 3 2 1 24 24 H 1.09007 * 113.61382 * 25.42990 * 6 4 3 25 25 H 1.09002 * 113.69262 * 254.53741 * 6 4 3 26 26 H 0.97003 * 119.99618 * 23.47069 * 9 7 6 27 27 H 1.08004 * 122.70746 * 179.72660 * 12 11 10 28 28 H 1.09002 * 109.46719 * 304.99246 * 14 13 12 29 29 H 0.96700 * 113.99838 * 180.02562 * 15 14 13 30 30 H 1.48506 * 109.99844 * 178.67662 * 16 14 13 31 31 H 1.48501 * 109.99794 * 299.99232 * 16 14 13 32 32 H 1.08998 * 113.61675 * 139.93374 * 18 7 6 33 33 H 1.09002 * 113.61536 * 270.84612 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.9000 0.4287 -0.6962 6 6 4.2603 2.5354 -0.1235 7 6 5.2678 1.9993 0.9072 8 1 6.1076 1.4669 0.4608 9 7 5.6872 2.9988 1.8928 10 6 6.8961 2.8542 2.5553 11 7 7.7276 1.8750 2.3784 12 6 8.8362 1.8959 3.0970 13 6 8.9449 2.9402 3.9185 14 6 10.0973 3.2177 4.8491 15 8 11.2786 3.4650 4.0841 16 14 9.7081 4.7121 5.8913 17 16 7.5080 3.9408 3.7249 18 6 4.1471 1.0730 1.4078 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.6886 1.8465 0.8899 23 1 1.6886 1.8464 -0.8900 24 1 3.6738 3.3802 0.2377 25 1 4.6945 2.7115 -1.1077 26 1 5.1188 3.7619 2.0817 27 1 9.5909 1.1264 3.0282 28 1 10.2575 2.3552 5.4962 29 1 12.0621 3.6511 4.6194 30 1 10.8232 4.9772 6.8355 31 1 9.4877 5.8949 5.0208 32 1 4.4896 0.0688 1.6576 33 1 3.5295 1.5172 2.1885 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12906262_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:45 Heat of formation + Delta-G solvation = 4.452836 kcal Electronic energy + Delta-G solvation = -16546.287598 eV Core-core repulsion = 13701.778352 eV Total energy + Delta-G solvation = -2844.509246 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02268 -40.18169 -38.41038 -37.89290 -35.37246 -31.51872 -29.64992 -27.10048 -26.79329 -26.31119 -24.79365 -23.17982 -20.93593 -20.57035 -19.37060 -18.58342 -17.66448 -17.42218 -16.86984 -16.78332 -16.20429 -15.91286 -15.79699 -15.39111 -15.33365 -14.52533 -14.11875 -14.00753 -13.44571 -13.21329 -13.05241 -12.91779 -12.49772 -12.44436 -12.30438 -11.98521 -11.77432 -11.38926 -11.03965 -10.70835 -10.57814 -10.28129 -10.22108 -8.72493 -5.03384 -0.09070 0.02658 0.64746 1.23811 1.53140 1.88262 1.95480 2.18882 2.81881 3.43375 3.46852 3.57715 3.68819 3.83562 3.91702 3.97309 4.31746 4.39320 4.46926 4.49076 4.53491 4.60267 4.71152 4.71708 4.76041 4.82098 4.85812 5.00391 5.05522 5.11189 5.38955 5.86836 6.16857 6.24760 6.59575 7.00982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.070 3.930 4 C -0.105 4.105 5 H 0.093 0.907 6 C -0.123 4.123 7 C 0.137 3.863 8 H 0.099 0.901 9 N -0.673 5.673 10 C 0.316 3.684 11 N -0.579 5.579 12 C 0.102 3.898 13 C -0.271 4.271 14 C -0.027 4.027 15 O -0.557 6.557 16 Si 0.718 3.282 17 S 0.112 5.888 18 C -0.141 4.141 19 H 0.049 0.951 20 H 0.090 0.910 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.425 0.575 27 H 0.180 0.820 28 H 0.107 0.893 29 H 0.397 0.603 30 H -0.255 1.255 31 H -0.282 1.282 32 H 0.058 0.942 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 2.162 2.327 4.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.007 4.007 4 C -0.124 4.124 5 H 0.112 0.888 6 C -0.161 4.161 7 C 0.030 3.970 8 H 0.117 0.883 9 N -0.312 5.312 10 C -0.055 4.055 11 N -0.305 5.305 12 C -0.049 4.049 13 C -0.394 4.394 14 C -0.139 4.139 15 O -0.367 6.367 16 Si 0.620 3.380 17 S 0.361 5.639 18 C -0.181 4.181 19 H 0.068 0.932 20 H 0.108 0.892 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.126 0.874 25 H 0.104 0.896 26 H 0.265 0.735 27 H 0.197 0.803 28 H 0.124 0.876 29 H 0.248 0.752 30 H -0.180 1.180 31 H -0.209 1.209 32 H 0.077 0.923 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.357 3.111 2.021 5.722 hybrid contribution 1.489 -0.468 -0.408 1.613 sum -2.868 2.642 1.613 4.220 Atomic orbital electron populations 1.22883 0.79819 1.03550 1.00800 1.87863 1.21114 1.29236 1.95593 1.22624 0.92636 0.84298 1.01102 1.22301 0.93220 0.98829 0.98072 0.88824 1.23329 0.96118 0.96996 0.99702 1.22507 0.95769 0.89769 0.88935 0.88317 1.44146 1.16144 1.28607 1.42348 1.23981 0.92426 0.93798 0.95296 1.66462 1.05969 1.26606 1.31507 1.21471 0.93857 0.98168 0.91362 1.24605 1.01890 1.01112 1.11773 1.23943 0.83634 1.10211 0.96090 1.86573 1.19637 1.92784 1.37731 0.94432 0.88811 0.75376 0.79362 1.83808 1.14818 1.26539 1.38736 1.23573 0.97341 1.00080 0.97068 0.93198 0.89181 0.93211 0.92133 0.92146 0.87415 0.89590 0.73485 0.80337 0.87580 0.75215 1.17997 1.20887 0.92306 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.70 10.70 -148.98 -1.59 -3.30 16 3 C 0.07 -0.09 5.78 71.98 0.42 0.33 16 4 C -0.11 0.16 4.01 -10.21 -0.04 0.12 16 5 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 6 C -0.12 0.60 7.39 31.12 0.23 0.83 16 7 C 0.14 -0.04 4.33 45.51 0.20 0.15 16 8 H 0.10 0.40 7.70 -2.39 -0.02 0.38 16 9 N -0.67 0.29 5.52 -327.91 -1.81 -1.51 16 10 C 0.32 1.56 8.09 179.32 1.45 3.01 16 11 N -0.58 -5.28 9.85 -202.03 -1.99 -7.27 16 12 C 0.10 0.74 11.24 83.54 0.94 1.68 16 13 C -0.27 -1.31 5.76 24.57 0.14 -1.16 16 14 C -0.03 -0.02 2.98 71.24 0.21 0.20 16 15 O -0.56 -1.62 12.86 -148.98 -1.92 -3.54 16 16 Si 0.72 -0.55 31.07 68.60 2.13 1.58 16 17 S 0.11 0.29 20.59 -56.49 -1.16 -0.87 16 18 C -0.14 0.01 7.45 31.18 0.23 0.24 16 19 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 20 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 21 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 22 H 0.06 -0.21 7.85 -2.39 -0.02 -0.23 16 23 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 24 H 0.11 -0.91 8.07 -2.38 -0.02 -0.93 16 25 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.43 -2.48 8.84 -92.71 -0.82 -3.29 16 27 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 28 H 0.11 -0.43 7.96 -2.39 -0.02 -0.45 16 29 H 0.40 -2.31 8.74 -74.06 -0.65 -2.96 16 30 H -0.26 -0.37 7.11 99.48 0.71 0.34 16 31 H -0.28 -1.81 7.11 99.48 0.71 -1.10 16 32 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.09 -0.13 7.90 -2.39 -0.02 -0.15 16 Total: 0.00 -15.30 294.94 -1.62 -16.92 By element: Atomic # 1 Polarization: -8.30 SS G_CDS: -0.31 Total: -8.61 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.03 Total: 6.60 kcal Atomic # 7 Polarization: -4.99 SS G_CDS: -3.80 Total: -8.79 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -3.51 Total: -6.84 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 2.13 Total: 1.58 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.16 Total: -0.87 kcal Total: -15.30 -1.62 -16.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12906262_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.376 kcal (2) G-P(sol) polarization free energy of solvation -15.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds