Wall clock time and date at job start Mon Mar 8 2021 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00127 * 2 1 4 4 C 1.53005 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.09000 * 112.85133 * 43.80390 * 4 3 2 6 6 C 1.53787 * 113.61178 * 175.00059 * 4 3 2 7 7 C 1.53784 * 87.07923 * 140.06478 * 6 4 3 8 8 H 1.09002 * 113.61478 * 89.11632 * 7 6 4 9 9 N 1.46497 * 113.61569 * 220.01663 * 7 6 4 10 10 C 1.38600 * 120.00322 * 205.00223 * 9 7 6 11 11 N 1.29690 * 124.95133 * 179.72326 * 10 9 7 12 12 C 1.32119 * 116.86500 * 179.81180 * 11 10 9 13 13 C 1.50705 * 122.70762 * 180.22493 * 12 11 10 14 14 O 1.42900 * 109.46858 * 150.26863 * 13 12 11 15 15 Si 1.86293 * 109.47383 * 30.26577 * 13 12 11 16 16 C 1.33329 * 114.58310 * 0.46962 * 12 11 10 17 17 C 1.50697 * 125.95232 * 179.75026 * 16 12 11 18 18 S 1.70962 * 124.94988 * 0.02562 * 10 9 7 19 19 C 1.53779 * 87.08045 * 334.56667 * 7 6 4 20 20 H 1.09006 * 109.46927 * 299.99504 * 1 2 3 21 21 H 1.09000 * 109.47380 * 59.99816 * 1 2 3 22 22 H 1.08997 * 109.47637 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47490 * 60.00516 * 3 2 1 24 24 H 1.09006 * 109.47531 * 300.00117 * 3 2 1 25 25 H 1.09004 * 113.61202 * 254.61231 * 6 4 3 26 26 H 1.08994 * 113.61447 * 25.51662 * 6 4 3 27 27 H 0.97009 * 119.99534 * 24.99936 * 9 7 6 28 28 H 1.09001 * 109.46799 * 270.26102 * 13 12 11 29 29 H 0.96696 * 113.99888 * 299.99383 * 14 13 12 30 30 H 1.48496 * 110.00121 * 58.67979 * 15 13 12 31 31 H 1.48500 * 110.00178 * 179.97438 * 15 13 12 32 32 H 1.08999 * 109.46997 * 179.97438 * 17 16 12 33 33 H 1.08995 * 109.47299 * 299.98073 * 17 16 12 34 34 H 1.09000 * 109.46718 * 59.98141 * 17 16 12 35 35 H 1.09006 * 113.61307 * 270.88660 * 19 7 6 36 36 H 1.09007 * 113.61642 * 139.98417 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8999 0.4286 -0.6962 6 6 4.2603 2.5353 -0.1235 7 6 5.2692 1.9983 0.9055 8 1 6.1076 1.4647 0.4577 9 7 5.6899 2.9969 1.8912 10 6 6.9139 2.8686 2.5288 11 7 7.3827 3.6962 3.4105 12 6 8.5689 3.4163 3.9206 13 6 9.2350 4.2843 4.9570 14 8 10.0694 3.4766 5.7897 15 14 7.9343 5.1150 6.0003 16 6 9.1312 2.3067 3.4408 17 6 10.4757 1.7535 3.8374 18 16 8.0288 1.6002 2.2623 19 6 4.1471 1.0734 1.4059 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.6887 1.8463 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 4.6928 2.7107 -1.1086 26 1 3.6744 3.3798 0.2391 27 1 5.1119 3.7481 2.0977 28 1 9.8415 5.0420 4.4608 29 1 9.5955 2.7795 6.2634 30 1 7.0807 4.0927 6.6571 31 1 8.5784 5.9735 7.0267 32 1 10.6701 0.8370 3.2803 33 1 11.2507 2.4864 3.6131 34 1 10.4787 1.5368 4.9056 35 1 3.5301 1.5184 2.1867 36 1 4.4881 0.0687 1.6556 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12906262_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:48 Heat of formation + Delta-G solvation = 1.145455 kcal Electronic energy + Delta-G solvation = -18502.646318 eV Core-core repulsion = 15502.456034 eV Total energy + Delta-G solvation = -3000.190284 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17064 -40.54515 -38.48902 -37.83720 -35.42064 -32.60959 -29.94094 -28.97795 -26.95565 -26.62550 -25.64578 -24.53719 -23.18581 -21.28040 -20.15692 -19.14385 -18.02379 -17.50996 -17.38220 -16.84345 -16.78243 -16.58570 -15.98451 -15.76182 -15.39571 -15.31258 -14.32650 -14.28266 -13.87930 -13.76951 -13.53475 -13.47231 -13.29882 -13.07607 -12.73582 -12.49538 -12.34853 -12.03808 -11.96498 -11.73830 -11.42255 -10.92162 -10.67226 -10.59281 -10.55017 -10.05683 -8.61980 -4.80071 -0.03892 0.14841 0.72475 1.28281 1.65890 1.81639 1.93523 1.98655 2.80931 3.27831 3.40419 3.50219 3.55902 3.72316 3.85338 4.12914 4.25004 4.31396 4.37030 4.47175 4.48145 4.54773 4.58806 4.69070 4.72550 4.79480 4.80125 4.85129 4.86602 5.00868 5.02910 5.05757 5.25287 5.32931 5.69928 6.23043 6.30548 6.43150 6.91314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.068 3.932 4 C -0.105 4.105 5 H 0.101 0.899 6 C -0.120 4.120 7 C 0.125 3.875 8 H 0.109 0.891 9 N -0.674 5.674 10 C 0.311 3.689 11 N -0.558 5.558 12 C 0.055 3.945 13 C -0.041 4.041 14 O -0.532 6.532 15 Si 0.783 3.217 16 C -0.257 4.257 17 C -0.057 4.057 18 S 0.112 5.888 19 C -0.146 4.146 20 H 0.047 0.953 21 H 0.050 0.950 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.419 0.581 28 H 0.132 0.868 29 H 0.384 0.616 30 H -0.306 1.306 31 H -0.291 1.291 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 0.040 -3.883 5.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.009 4.009 4 C -0.124 4.124 5 H 0.120 0.880 6 C -0.159 4.159 7 C 0.020 3.980 8 H 0.127 0.873 9 N -0.314 5.314 10 C -0.060 4.060 11 N -0.286 5.286 12 C -0.075 4.075 13 C -0.153 4.153 14 O -0.339 6.339 15 Si 0.688 3.312 16 C -0.380 4.380 17 C -0.116 4.116 18 S 0.361 5.639 19 C -0.186 4.186 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.109 0.891 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.258 0.742 28 H 0.149 0.851 29 H 0.234 0.766 30 H -0.234 1.234 31 H -0.219 1.219 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.539 -0.186 -3.967 5.320 hybrid contribution 0.129 -0.164 1.100 1.120 sum -3.410 -0.349 -2.867 4.469 Atomic orbital electron populations 1.22877 0.79893 1.03543 1.00738 1.87849 1.21022 1.29186 1.95584 1.22632 0.92906 0.84309 1.01018 1.22301 0.93100 0.98970 0.98018 0.88031 1.23308 0.95842 0.97002 0.99720 1.22742 0.96415 0.89727 0.89135 0.87301 1.44109 1.14672 1.29847 1.42762 1.23587 0.93366 0.94408 0.94670 1.65747 1.14612 1.31774 1.16418 1.20227 0.90683 0.96246 1.00342 1.24495 1.01746 0.95324 0.93779 1.86596 1.36892 1.49006 1.61450 0.92891 0.77285 0.82433 0.78555 1.25372 1.04517 1.02301 1.05833 1.20149 0.89193 1.00093 1.02207 1.83864 1.10652 1.26901 1.42465 1.23623 0.97307 1.00301 0.97330 0.93418 0.93164 0.89149 0.92500 0.92110 0.88885 0.87721 0.74185 0.85068 0.76607 1.23371 1.21868 0.91660 0.90902 0.89645 0.89322 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 11.01 113.37 1.25 1.19 16 2 O -0.42 -1.01 10.70 -148.98 -1.59 -2.60 16 3 C 0.07 -0.20 5.78 71.98 0.42 0.22 16 4 C -0.10 0.49 4.01 -10.26 -0.04 0.45 16 5 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 6 C -0.12 0.94 7.39 31.12 0.23 1.17 16 7 C 0.13 -0.59 4.23 45.52 0.19 -0.40 16 8 H 0.11 -0.49 7.06 -2.39 -0.02 -0.51 16 9 N -0.67 1.29 5.51 -327.91 -1.81 -0.51 16 10 C 0.31 1.04 8.24 179.32 1.48 2.51 16 11 N -0.56 -3.31 8.95 -189.86 -1.70 -5.01 16 12 C 0.06 0.30 5.91 41.41 0.24 0.55 16 13 C -0.04 -0.13 2.94 71.24 0.21 0.08 16 14 O -0.53 -1.56 10.17 -148.98 -1.52 -3.08 16 15 Si 0.78 2.94 32.09 68.60 2.20 5.14 16 16 C -0.26 -1.11 6.50 24.57 0.16 -0.95 16 17 C -0.06 -0.06 8.91 71.24 0.63 0.57 16 18 S 0.11 0.26 21.69 -56.49 -1.23 -0.97 16 19 C -0.15 0.52 7.43 31.12 0.23 0.75 16 20 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 21 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 22 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 23 H 0.06 -0.24 7.85 -2.39 -0.02 -0.26 16 24 H 0.06 -0.29 8.14 -2.38 -0.02 -0.31 16 25 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 26 H 0.10 -1.01 8.08 -2.39 -0.02 -1.03 16 27 H 0.42 -1.73 8.85 -92.70 -0.82 -2.55 16 28 H 0.13 0.18 7.96 -2.39 -0.02 0.17 16 29 H 0.38 -0.63 8.13 -74.06 -0.60 -1.23 16 30 H -0.31 -3.10 7.11 99.48 0.71 -2.39 16 31 H -0.29 -2.49 7.11 99.48 0.71 -1.79 16 32 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.09 -0.04 6.39 -2.39 -0.02 -0.05 16 35 H 0.09 -0.27 7.90 -2.38 -0.02 -0.29 16 36 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 Total: 0.00 -12.26 311.18 -0.93 -13.19 By element: Atomic # 1 Polarization: -12.00 SS G_CDS: -0.29 Total: -12.29 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.00 Total: 6.14 kcal Atomic # 7 Polarization: -2.02 SS G_CDS: -3.51 Total: -5.53 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: -3.11 Total: -5.68 kcal Atomic # 14 Polarization: 2.94 SS G_CDS: 2.20 Total: 5.14 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.23 Total: -0.97 kcal Total: -12.26 -0.93 -13.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12906262_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.333 kcal (2) G-P(sol) polarization free energy of solvation -12.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds