Wall clock time and date at job start Mon Mar 8 2021 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00111 * 2 1 4 4 C 1.53001 * 109.47534 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.90400 * 43.74655 * 4 3 2 6 6 C 1.53776 * 113.61843 * 174.99809 * 4 3 2 7 7 C 1.53783 * 87.07878 * 139.98176 * 6 4 3 8 8 H 1.09002 * 113.61342 * 89.20698 * 7 6 4 9 9 N 1.46507 * 113.61454 * 220.01563 * 7 6 4 10 10 C 1.39140 * 120.00035 * 203.47190 * 9 7 6 11 11 N 1.32328 * 119.72029 * 359.97438 * 10 9 7 12 12 C 1.32015 * 121.64787 * 180.02562 * 11 10 9 13 13 C 1.37976 * 120.89981 * 0.02661 * 12 11 10 14 14 C 1.50698 * 120.32815 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.47499 * 244.99646 * 14 13 12 16 16 Si 1.86302 * 109.47133 * 4.99796 * 14 13 12 17 17 C 1.38907 * 119.34885 * 359.94946 * 13 12 11 18 18 C 1.38444 * 118.48255 * 0.04988 * 17 13 12 19 19 F 1.35102 * 120.47167 * 180.25194 * 18 17 13 20 20 C 1.53777 * 87.17558 * 334.61242 * 7 6 4 21 21 H 1.09003 * 109.47367 * 299.99702 * 1 2 3 22 22 H 1.08998 * 109.47334 * 59.99602 * 1 2 3 23 23 H 1.09002 * 109.47473 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47195 * 59.99974 * 3 2 1 25 25 H 1.09002 * 109.47639 * 300.00133 * 3 2 1 26 26 H 1.08999 * 113.61580 * 25.43849 * 6 4 3 27 27 H 1.08994 * 113.69252 * 254.54099 * 6 4 3 28 28 H 0.97000 * 119.99290 * 23.48026 * 9 7 6 29 29 H 1.07999 * 119.55037 * 179.97438 * 12 11 10 30 30 H 1.09004 * 109.47183 * 124.99322 * 14 13 12 31 31 H 0.96701 * 113.99568 * 59.99590 * 15 14 13 32 32 H 1.48492 * 110.00311 * 180.02562 * 16 14 13 33 33 H 1.48499 * 109.99643 * 301.32211 * 16 14 13 34 34 H 1.07995 * 120.75977 * 180.02562 * 17 13 12 35 35 H 1.08993 * 113.61621 * 139.94072 * 20 7 6 36 36 H 1.09005 * 113.61337 * 270.84347 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9008 0.4282 -0.6952 6 6 4.2603 2.5353 -0.1235 7 6 5.2678 1.9991 0.9071 8 1 6.1077 1.4667 0.4606 9 7 5.6873 2.9986 1.8927 10 6 6.9009 2.8534 2.5577 11 7 7.6716 1.8100 2.2960 12 6 8.8297 1.6343 2.9047 13 6 9.2813 2.5392 3.8434 14 6 10.6052 2.3256 4.5309 15 8 10.3875 2.1038 5.9256 16 14 11.4568 0.8426 3.7917 17 6 8.5039 3.6492 4.1481 18 6 7.2940 3.8075 3.4940 19 9 6.5082 4.8750 3.7557 20 6 4.1471 1.0727 1.4077 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.6739 3.3801 0.2378 27 1 4.6944 2.7114 -1.1077 28 1 5.1189 3.7616 2.0817 29 1 9.4316 0.7701 2.6654 30 1 11.2309 3.2081 4.3966 31 1 9.8373 1.3327 6.1200 32 1 12.7634 0.6209 4.4615 33 1 10.5999 -0.3611 3.9398 34 1 8.8354 4.3721 4.8787 35 1 4.4896 0.0686 1.6575 36 1 3.5296 1.5169 2.1885 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12906262_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:50 Heat of formation + Delta-G solvation = -50.746249 kcal Electronic energy + Delta-G solvation = -20236.482806 eV Core-core repulsion = 16830.973726 eV Total energy + Delta-G solvation = -3405.509080 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.85578 -41.48705 -40.44376 -38.48082 -37.95356 -35.54838 -33.20141 -31.48898 -29.53722 -27.11091 -26.81292 -26.29140 -25.14705 -23.23712 -22.53704 -20.82472 -19.23776 -18.61202 -18.32101 -17.64169 -17.40269 -16.96437 -16.87619 -16.60829 -16.26716 -16.08287 -15.75197 -15.45793 -15.29154 -14.85059 -14.33899 -14.02945 -13.98988 -13.55627 -13.44030 -13.24532 -13.07778 -12.69245 -12.44389 -12.06935 -11.99279 -11.84915 -11.41705 -11.15390 -10.75467 -10.62733 -10.59978 -10.52079 -8.75201 -5.00485 -0.05175 0.13521 1.22314 1.54347 1.92748 1.97223 2.55538 2.73985 3.05938 3.26584 3.35815 3.43685 3.55119 3.57157 3.79667 3.84312 3.86881 4.00068 4.25054 4.30930 4.38938 4.43643 4.45185 4.50709 4.52235 4.61693 4.68642 4.72356 4.75646 4.76375 4.98391 5.02507 5.04793 5.23788 5.47967 5.97167 6.17087 6.20168 6.35978 6.96952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.106 4.106 5 H 0.105 0.895 6 C -0.140 4.140 7 C 0.136 3.864 8 H 0.122 0.878 9 N -0.706 5.706 10 C 0.392 3.608 11 N -0.512 5.512 12 C 0.147 3.853 13 C -0.209 4.209 14 C -0.062 4.062 15 O -0.530 6.530 16 Si 0.684 3.316 17 C -0.037 4.037 18 C -0.022 4.022 19 F -0.134 7.134 20 C -0.145 4.145 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.087 0.913 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.412 0.588 29 H 0.163 0.837 30 H 0.120 0.880 31 H 0.376 0.624 32 H -0.254 1.254 33 H -0.256 1.256 34 H 0.149 0.851 35 H 0.076 0.924 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 0.526 -2.812 2.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.125 4.125 5 H 0.123 0.877 6 C -0.179 4.179 7 C 0.031 3.969 8 H 0.139 0.861 9 N -0.338 5.338 10 C 0.153 3.847 11 N -0.228 5.228 12 C -0.010 4.010 13 C -0.214 4.214 14 C -0.172 4.172 15 O -0.336 6.336 16 Si 0.584 3.416 17 C -0.063 4.063 18 C -0.048 4.048 19 F -0.113 7.113 20 C -0.184 4.184 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.106 0.894 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.249 0.751 29 H 0.180 0.820 30 H 0.138 0.862 31 H 0.224 0.776 32 H -0.179 1.179 33 H -0.181 1.181 34 H 0.166 0.834 35 H 0.095 0.905 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.405 -0.606 -3.360 3.439 hybrid contribution -1.156 1.196 1.735 2.404 sum -1.562 0.590 -1.625 2.330 Atomic orbital electron populations 1.22761 0.80826 1.03006 1.00009 1.87893 1.19809 1.27794 1.95400 1.22516 0.92880 0.84906 1.00181 1.22349 0.93043 0.98314 0.98776 0.87722 1.23385 0.97245 0.97099 1.00131 1.22512 0.96170 0.89600 0.88608 0.86066 1.44632 1.17891 1.28256 1.42994 1.18475 0.87924 0.89266 0.89021 1.67302 1.06498 1.20274 1.28752 1.22405 0.90770 0.97203 0.90648 1.20850 1.00032 0.97553 1.02960 1.24827 0.96410 1.11537 0.84436 1.86614 1.73763 1.51486 1.21768 0.95070 0.80015 0.76303 0.90166 1.21286 0.90986 0.97312 0.96754 1.18015 0.93714 0.89048 1.04032 1.91490 1.73242 1.53263 1.93311 1.23596 0.97379 1.00978 0.96483 0.94072 0.93987 0.89450 0.93225 0.93060 0.89491 0.90026 0.75084 0.81996 0.86249 0.77588 1.17866 1.18097 0.83353 0.90550 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 101.05 1.11 1.10 16 2 O -0.39 -0.79 10.70 -35.23 -0.38 -1.17 16 3 C 0.07 -0.02 5.78 37.16 0.21 0.20 16 4 C -0.11 0.09 4.01 -89.72 -0.36 -0.27 16 5 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 6 C -0.14 0.28 7.39 -25.92 -0.19 0.09 16 7 C 0.14 -0.09 4.24 -67.12 -0.28 -0.37 16 8 H 0.12 0.02 7.45 -51.93 -0.39 -0.37 16 9 N -0.71 -0.04 5.51 -53.06 -0.29 -0.33 16 10 C 0.39 0.65 7.49 -154.87 -1.16 -0.51 16 11 N -0.51 -0.87 9.15 -12.37 -0.11 -0.99 16 12 C 0.15 0.01 9.84 -17.57 -0.17 -0.16 16 13 C -0.21 0.05 5.36 -104.47 -0.56 -0.51 16 14 C -0.06 0.06 2.82 36.00 0.10 0.17 16 15 O -0.53 -0.31 12.84 -35.23 -0.45 -0.76 16 16 Si 0.68 -1.24 29.91 -169.99 -5.08 -6.33 16 17 C -0.04 -0.03 9.82 -39.26 -0.39 -0.41 16 18 C -0.02 -0.04 7.35 -39.09 -0.29 -0.32 16 19 F -0.13 -0.30 16.65 2.25 0.04 -0.27 16 20 C -0.15 0.04 7.45 -25.83 -0.19 -0.16 16 21 H 0.04 -0.04 8.14 -51.93 -0.42 -0.47 16 22 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 23 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 24 H 0.05 -0.04 7.85 -51.93 -0.41 -0.45 16 25 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.09 -0.23 8.07 -51.93 -0.42 -0.65 16 27 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.41 -0.43 8.18 -40.82 -0.33 -0.76 16 29 H 0.16 -0.32 4.84 -52.49 -0.25 -0.58 16 30 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 31 H 0.38 -0.80 8.70 45.56 0.40 -0.41 16 32 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 33 H -0.26 0.01 7.01 56.52 0.40 0.41 16 34 H 0.15 -0.03 8.06 -52.49 -0.42 -0.45 16 35 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 36 H 0.08 0.00 7.90 -51.93 -0.41 -0.41 16 LS Contribution 307.44 15.07 4.63 4.63 Total: 0.00 -5.46 307.44 -8.63 -14.08 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: -4.81 Total: -7.71 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.16 Total: -1.17 kcal Atomic # 7 Polarization: -0.91 SS G_CDS: -0.41 Total: -1.32 kcal Atomic # 8 Polarization: -1.10 SS G_CDS: -0.83 Total: -1.93 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.08 Total: -6.33 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -5.46 -8.63 -14.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12906262_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.663 kcal (2) G-P(sol) polarization free energy of solvation -5.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds