Wall clock time and date at job start Mon Mar 8 2021 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42095 * 108.57783 * 2 1 4 4 O 1.42094 * 108.57671 * 228.97094 * 2 1 3 5 5 C 1.81402 * 101.91716 * 114.48502 * 2 1 3 6 6 H 1.08998 * 112.90802 * 311.24714 * 5 2 1 7 7 C 1.53778 * 113.61606 * 82.50685 * 5 2 1 8 8 C 1.53778 * 87.08449 * 139.97823 * 7 5 2 9 9 H 1.08993 * 113.61229 * 220.02023 * 8 7 5 10 10 N 1.46501 * 113.61560 * 89.11214 * 8 7 5 11 11 C 1.38414 * 119.99632 * 107.50331 * 10 8 7 12 12 N 1.32494 * 119.21433 * 359.73360 * 11 10 8 13 13 C 1.32277 * 120.73175 * 179.71762 * 12 11 10 14 14 C 1.38604 * 119.20197 * 0.54644 * 13 12 11 15 15 C 1.50701 * 120.72197 * 179.70892 * 14 13 12 16 16 O 1.42900 * 109.46932 * 245.01730 * 15 14 13 17 17 Si 1.86300 * 109.46930 * 5.01829 * 15 14 13 18 18 C 1.38601 * 118.55613 * 359.72996 * 14 13 12 19 19 N 1.32278 * 119.19722 * 359.97438 * 18 14 13 20 20 C 1.53784 * 87.08081 * 334.56700 * 8 7 5 21 21 H 1.09004 * 109.47389 * 305.51673 * 1 2 3 22 22 H 1.09004 * 109.46763 * 65.51552 * 1 2 3 23 23 H 1.08996 * 109.47491 * 185.51527 * 1 2 3 24 24 H 1.08999 * 113.61111 * 254.52886 * 7 5 2 25 25 H 1.08999 * 113.61280 * 25.34269 * 7 5 2 26 26 H 0.96998 * 120.00259 * 287.50678 * 10 8 7 27 27 H 1.08002 * 120.39988 * 180.24787 * 13 12 11 28 28 H 1.09000 * 109.46944 * 125.01998 * 15 14 13 29 29 H 0.96701 * 113.99377 * 179.97438 * 16 15 14 30 30 H 1.48494 * 110.00298 * 299.99822 * 17 15 14 31 31 H 1.48501 * 110.00051 * 61.32487 * 17 15 14 32 32 H 1.07999 * 120.39948 * 179.97438 * 18 14 13 33 33 H 1.09004 * 113.61451 * 270.88641 * 20 8 7 34 34 H 1.08994 * 113.61477 * 139.97943 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6153 6 1 1.6285 -0.2773 2.4304 7 6 2.1360 -2.2725 1.6194 8 6 3.3794 -2.2343 2.5234 9 1 4.1156 -3.0022 2.2859 10 7 3.0642 -2.1691 3.9526 11 6 3.2649 -3.2776 4.7569 12 7 3.7378 -4.3912 4.2168 13 6 3.9462 -5.4666 4.9584 14 6 3.6530 -5.4215 6.3123 15 6 3.8710 -6.6286 7.1879 16 8 2.6127 -7.0931 7.6807 17 14 4.6851 -7.9777 6.1940 18 6 3.1544 -4.2423 6.8434 19 7 2.9749 -3.2013 6.0474 20 6 3.6945 -0.8648 1.8990 21 1 -0.3634 0.5970 0.8365 22 1 -0.3633 0.4259 -0.9353 23 1 -0.3634 -1.0228 0.0988 24 1 1.2514 -2.6778 2.1106 25 1 2.3189 -2.7182 0.6417 26 1 2.7148 -1.3491 4.3353 27 1 4.3356 -6.3703 4.5134 28 1 4.5122 -6.3578 8.0268 29 1 2.6770 -7.8701 8.2527 30 1 3.8208 -8.3558 5.0472 31 1 6.0090 -7.5182 5.7025 32 1 2.9155 -4.1743 7.8944 33 1 4.3049 -0.9257 0.9980 34 1 4.0681 -0.1336 2.6159 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12912158_12175864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:40 Heat of formation + Delta-G solvation = 2.841096 kcal Electronic energy + Delta-G solvation = -20289.279752 eV Core-core repulsion = 16932.366372 eV Total energy + Delta-G solvation = -3356.913380 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21297 -40.49408 -38.05632 -37.96273 -37.05418 -35.60418 -34.78294 -32.26903 -30.69689 -27.49814 -27.13367 -26.28109 -25.65071 -23.20872 -21.20381 -20.07788 -19.61614 -18.70678 -18.39877 -18.09191 -17.26820 -17.05002 -16.66886 -16.55884 -16.20797 -15.86624 -15.40505 -15.16139 -14.85099 -14.48376 -14.33399 -14.21275 -14.09066 -13.97689 -13.79630 -13.21944 -13.12273 -13.01072 -12.39036 -12.35573 -12.17578 -12.04745 -11.92305 -11.83631 -11.45501 -11.13808 -10.65725 -10.03789 -9.24639 -5.10553 -1.08445 -0.04361 0.07160 1.15904 1.53354 1.57561 1.65576 1.83674 2.41987 2.67063 2.68899 2.94615 3.05485 3.22123 3.29460 3.40416 3.50519 3.54139 3.66418 3.74510 3.81297 3.91004 4.02595 4.28045 4.30535 4.39070 4.43577 4.52849 4.58582 4.63093 4.65117 4.77700 5.16086 5.66131 5.88297 6.26994 6.52298 7.17914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.427 3.573 3 O -0.937 6.937 4 O -0.933 6.933 5 C -0.611 4.611 6 H 0.151 0.849 7 C -0.128 4.128 8 C 0.149 3.851 9 H 0.119 0.881 10 N -0.678 5.678 11 C 0.569 3.431 12 N -0.559 5.559 13 C 0.195 3.805 14 C -0.245 4.245 15 C -0.051 4.051 16 O -0.548 6.548 17 Si 0.681 3.319 18 C 0.227 3.773 19 N -0.566 5.566 20 C -0.114 4.114 21 H 0.128 0.872 22 H 0.130 0.870 23 H 0.129 0.871 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.416 0.584 27 H 0.159 0.841 28 H 0.077 0.923 29 H 0.384 0.616 30 H -0.248 1.248 31 H -0.252 1.252 32 H 0.174 0.826 33 H 0.111 0.889 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -4.214 4.908 6.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.609 3.391 3 O -0.935 6.935 4 O -0.931 6.931 5 C -0.719 4.719 6 H 0.169 0.831 7 C -0.168 4.168 8 C 0.041 3.959 9 H 0.137 0.863 10 N -0.314 5.314 11 C 0.212 3.788 12 N -0.281 5.281 13 C 0.027 3.973 14 C -0.253 4.253 15 C -0.163 4.163 16 O -0.354 6.354 17 Si 0.582 3.418 18 C 0.059 3.941 19 N -0.287 5.287 20 C -0.153 4.153 21 H 0.146 0.854 22 H 0.148 0.852 23 H 0.147 0.853 24 H 0.107 0.893 25 H 0.136 0.864 26 H 0.254 0.746 27 H 0.176 0.824 28 H 0.095 0.905 29 H 0.232 0.768 30 H -0.173 1.173 31 H -0.177 1.177 32 H 0.191 0.809 33 H 0.129 0.871 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.042 -2.809 2.309 3.636 hybrid contribution -0.922 -0.001 1.472 1.737 sum -0.964 -2.810 3.781 4.808 Atomic orbital electron populations 1.30236 1.26635 1.11657 1.11883 1.07718 0.78450 0.75571 0.77370 1.93614 1.79113 1.34302 1.86425 1.93614 1.79182 1.67131 1.53140 1.31811 1.07325 1.09107 1.23702 0.83135 1.23302 1.01074 0.89521 1.02875 1.21662 0.97279 0.98263 0.78711 0.86306 1.43717 1.69564 1.11557 1.06580 1.19295 0.87361 0.86566 0.85554 1.67895 1.20689 0.99908 1.39572 1.22646 0.89971 0.95179 0.89479 1.20752 1.10647 0.97883 0.95982 1.24310 0.90898 0.99545 1.01590 1.86489 1.28118 1.50867 1.69967 0.94991 0.79118 0.85214 0.82522 1.22847 0.86113 0.85634 0.99535 1.67977 1.24261 1.32601 1.03875 1.23036 0.90840 0.98365 1.03082 0.85363 0.85161 0.85254 0.89273 0.86440 0.74572 0.82394 0.90530 0.76777 1.17278 1.17658 0.80944 0.87074 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.41 10.62 101.05 1.07 3.48 16 2 S 2.43 -2.77 5.34 -107.50 -0.57 -3.35 16 3 O -0.94 -2.86 18.10 -57.83 -1.05 -3.91 16 4 O -0.93 -2.24 17.19 -57.83 -0.99 -3.23 16 5 C -0.61 1.88 4.05 -25.92 -0.10 1.78 16 6 H 0.15 -0.81 8.14 -51.93 -0.42 -1.23 16 7 C -0.13 0.28 7.42 -25.92 -0.19 0.08 16 8 C 0.15 -0.14 4.33 -67.12 -0.29 -0.43 16 9 H 0.12 0.00 7.37 -51.93 -0.38 -0.38 16 10 N -0.68 -0.11 5.41 -55.00 -0.30 -0.40 16 11 C 0.57 1.63 8.42 -322.80 -2.72 -1.09 16 12 N -0.56 -1.86 9.13 -13.93 -0.13 -1.99 16 13 C 0.19 0.46 9.92 -17.22 -0.17 0.29 16 14 C -0.24 -0.32 5.40 -104.35 -0.56 -0.89 16 15 C -0.05 0.08 2.82 36.01 0.10 0.18 16 16 O -0.55 0.73 12.82 -35.23 -0.45 0.28 16 17 Si 0.68 -1.64 29.92 -169.99 -5.09 -6.73 16 18 C 0.23 0.37 10.99 -17.23 -0.19 0.18 16 19 N -0.57 -1.72 10.46 -13.93 -0.15 -1.86 16 20 C -0.11 0.24 7.42 -25.91 -0.19 0.05 16 21 H 0.13 -0.67 8.14 -51.92 -0.42 -1.09 16 22 H 0.13 -0.47 8.14 -51.92 -0.42 -0.89 16 23 H 0.13 -0.66 8.14 -51.93 -0.42 -1.08 16 24 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 25 H 0.12 -0.27 7.36 -51.93 -0.38 -0.65 16 26 H 0.42 -0.55 8.82 -40.82 -0.36 -0.91 16 27 H 0.16 0.17 5.04 -52.49 -0.26 -0.10 16 28 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 29 H 0.38 -2.41 8.74 45.56 0.40 -2.01 16 30 H -0.25 -0.17 7.06 56.52 0.40 0.23 16 31 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 32 H 0.17 -0.14 8.06 -52.49 -0.42 -0.57 16 33 H 0.11 -0.28 8.10 -51.93 -0.42 -0.70 16 34 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 LS Contribution 304.22 15.07 4.58 4.58 Total: 0.00 -12.61 304.22 -11.37 -23.98 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: -3.98 Total: -11.00 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -3.25 Total: 3.63 kcal Atomic # 7 Polarization: -3.68 SS G_CDS: -0.57 Total: -4.25 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -2.49 Total: -6.86 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: -5.09 Total: -6.73 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -0.57 Total: -3.35 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -12.61 -11.37 -23.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_12175864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.817 kcal (2) G-P(sol) polarization free energy of solvation -12.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds