Wall clock time and date at job start Mon Mar 8 2021 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42095 * 108.57783 * 2 1 4 4 O 1.42094 * 108.57671 * 228.97094 * 2 1 3 5 5 C 1.81402 * 101.91716 * 114.48502 * 2 1 3 6 6 H 1.08998 * 112.90802 * 311.24714 * 5 2 1 7 7 C 1.53778 * 113.61606 * 82.50685 * 5 2 1 8 8 C 1.53778 * 87.08449 * 139.97823 * 7 5 2 9 9 H 1.08993 * 113.61229 * 220.02023 * 8 7 5 10 10 N 1.46501 * 113.61560 * 89.11214 * 8 7 5 11 11 C 1.38414 * 119.99632 * 107.50331 * 10 8 7 12 12 N 1.32494 * 119.21433 * 359.73360 * 11 10 8 13 13 C 1.32277 * 120.73175 * 179.71762 * 12 11 10 14 14 C 1.38604 * 119.20197 * 0.54644 * 13 12 11 15 15 C 1.50701 * 120.72197 * 179.70892 * 14 13 12 16 16 O 1.42900 * 109.46932 * 245.01730 * 15 14 13 17 17 Si 1.86300 * 109.46930 * 5.01829 * 15 14 13 18 18 C 1.38601 * 118.55613 * 359.72996 * 14 13 12 19 19 N 1.32278 * 119.19722 * 359.97438 * 18 14 13 20 20 C 1.53784 * 87.08081 * 334.56700 * 8 7 5 21 21 H 1.09004 * 109.47389 * 305.51673 * 1 2 3 22 22 H 1.09004 * 109.46763 * 65.51552 * 1 2 3 23 23 H 1.08996 * 109.47491 * 185.51527 * 1 2 3 24 24 H 1.08999 * 113.61111 * 254.52886 * 7 5 2 25 25 H 1.08999 * 113.61280 * 25.34269 * 7 5 2 26 26 H 0.96998 * 120.00259 * 287.50678 * 10 8 7 27 27 H 1.08002 * 120.39988 * 180.24787 * 13 12 11 28 28 H 1.09000 * 109.46944 * 125.01998 * 15 14 13 29 29 H 0.96701 * 113.99377 * 179.97438 * 16 15 14 30 30 H 1.48494 * 110.00298 * 299.99822 * 17 15 14 31 31 H 1.48501 * 110.00051 * 61.32487 * 17 15 14 32 32 H 1.07999 * 120.39948 * 179.97438 * 18 14 13 33 33 H 1.09004 * 113.61451 * 270.88641 * 20 8 7 34 34 H 1.08994 * 113.61477 * 139.97943 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6153 6 1 1.6285 -0.2773 2.4304 7 6 2.1360 -2.2725 1.6194 8 6 3.3794 -2.2343 2.5234 9 1 4.1156 -3.0022 2.2859 10 7 3.0642 -2.1691 3.9526 11 6 3.2649 -3.2776 4.7569 12 7 3.7378 -4.3912 4.2168 13 6 3.9462 -5.4666 4.9584 14 6 3.6530 -5.4215 6.3123 15 6 3.8710 -6.6286 7.1879 16 8 2.6127 -7.0931 7.6807 17 14 4.6851 -7.9777 6.1940 18 6 3.1544 -4.2423 6.8434 19 7 2.9749 -3.2013 6.0474 20 6 3.6945 -0.8648 1.8990 21 1 -0.3634 0.5970 0.8365 22 1 -0.3633 0.4259 -0.9353 23 1 -0.3634 -1.0228 0.0988 24 1 1.2514 -2.6778 2.1106 25 1 2.3189 -2.7182 0.6417 26 1 2.7148 -1.3491 4.3353 27 1 4.3356 -6.3703 4.5134 28 1 4.5122 -6.3578 8.0268 29 1 2.6770 -7.8701 8.2527 30 1 3.8208 -8.3558 5.0472 31 1 6.0090 -7.5182 5.7025 32 1 2.9155 -4.1743 7.8944 33 1 4.3049 -0.9257 0.9980 34 1 4.0681 -0.1336 2.6159 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12912158_12175864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:39 Heat of formation + Delta-G solvation = -3.512663 kcal Electronic energy + Delta-G solvation = -20289.555272 eV Core-core repulsion = 16932.366372 eV Total energy + Delta-G solvation = -3357.188900 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29070 -40.40725 -38.07321 -37.86227 -37.10358 -35.58985 -34.90085 -32.27282 -30.44608 -27.43898 -26.98895 -26.28965 -25.66389 -23.22700 -21.14770 -20.04359 -19.62407 -18.69757 -18.27353 -18.03984 -17.18305 -16.99060 -16.64343 -16.50475 -16.29432 -15.89233 -15.30565 -15.08819 -14.86240 -14.29416 -14.17217 -14.06374 -13.97095 -13.88042 -13.67331 -13.20395 -13.17649 -13.08276 -12.38010 -12.30206 -12.07926 -12.04001 -11.97727 -11.80181 -11.40535 -11.05559 -10.61345 -10.04555 -9.27385 -4.94746 -0.97567 -0.15301 -0.02764 1.31605 1.59078 1.66615 1.78409 1.96751 2.53045 2.60582 2.80240 2.91163 3.14995 3.36720 3.40906 3.45230 3.50072 3.58636 3.85019 3.87554 4.04704 4.08754 4.18825 4.42034 4.46771 4.50757 4.57634 4.58064 4.71667 4.78751 4.87480 4.92828 5.16330 5.60577 5.85325 6.24822 6.96122 7.09614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.428 3.572 3 O -0.986 6.986 4 O -0.978 6.978 5 C -0.589 4.589 6 H 0.181 0.819 7 C -0.125 4.125 8 C 0.142 3.858 9 H 0.105 0.895 10 N -0.670 5.670 11 C 0.553 3.447 12 N -0.578 5.578 13 C 0.176 3.824 14 C -0.250 4.250 15 C -0.053 4.053 16 O -0.565 6.565 17 Si 0.768 3.232 18 C 0.219 3.781 19 N -0.580 5.580 20 C -0.119 4.119 21 H 0.151 0.849 22 H 0.132 0.868 23 H 0.149 0.851 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.423 0.577 27 H 0.161 0.839 28 H 0.103 0.897 29 H 0.406 0.594 30 H -0.295 1.295 31 H -0.288 1.288 32 H 0.196 0.804 33 H 0.110 0.890 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -4.413 6.491 8.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.616 3.384 3 O -0.983 6.983 4 O -0.975 6.975 5 C -0.699 4.699 6 H 0.198 0.802 7 C -0.165 4.165 8 C 0.034 3.966 9 H 0.123 0.877 10 N -0.307 5.307 11 C 0.197 3.803 12 N -0.301 5.301 13 C 0.009 3.991 14 C -0.258 4.258 15 C -0.164 4.164 16 O -0.375 6.375 17 Si 0.674 3.326 18 C 0.052 3.948 19 N -0.302 5.302 20 C -0.159 4.159 21 H 0.170 0.830 22 H 0.150 0.850 23 H 0.167 0.833 24 H 0.115 0.885 25 H 0.134 0.866 26 H 0.263 0.737 27 H 0.178 0.822 28 H 0.121 0.879 29 H 0.258 0.742 30 H -0.223 1.223 31 H -0.215 1.215 32 H 0.213 0.787 33 H 0.128 0.872 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.053 -3.005 3.900 5.035 hybrid contribution -0.632 0.007 0.987 1.172 sum -1.685 -2.998 4.887 5.976 Atomic orbital electron populations 1.30109 1.22672 1.13572 1.13118 1.07323 0.79683 0.73993 0.77391 1.93552 1.80958 1.36560 1.87257 1.93554 1.80909 1.67612 1.55444 1.31687 1.06993 1.08309 1.22896 0.80174 1.23290 1.00674 0.90075 1.02485 1.21695 0.97796 0.98582 0.78492 0.87741 1.43739 1.69089 1.11168 1.06656 1.19569 0.87726 0.87086 0.85964 1.67882 1.21482 1.00461 1.40232 1.22876 0.90610 0.95261 0.90360 1.21083 1.09829 0.99063 0.95854 1.24389 0.91276 0.98495 1.02273 1.86435 1.28137 1.52294 1.70665 0.94119 0.75242 0.83121 0.80127 1.23306 0.85668 0.85403 1.00452 1.68023 1.24842 1.33317 1.04034 1.23106 0.91702 0.97868 1.03177 0.83050 0.84969 0.83269 0.88532 0.86613 0.73735 0.82213 0.87899 0.74238 1.22269 1.21537 0.78695 0.87199 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 5.63 10.62 113.37 1.20 6.84 16 2 S 2.43 -4.30 5.34 -56.49 -0.30 -4.60 16 3 O -0.99 -7.19 18.10 -127.37 -2.30 -9.49 16 4 O -0.98 -6.18 17.19 -127.37 -2.19 -8.36 16 5 C -0.59 3.87 4.05 31.12 0.13 4.00 16 6 H 0.18 -2.28 8.14 -2.39 -0.02 -2.30 16 7 C -0.13 0.54 7.42 31.12 0.23 0.77 16 8 C 0.14 -0.16 4.33 45.52 0.20 0.03 16 9 H 0.10 0.19 7.37 -2.39 -0.02 0.17 16 10 N -0.67 -0.39 5.41 -327.93 -1.77 -2.17 16 11 C 0.55 3.56 8.42 261.48 2.20 5.76 16 12 N -0.58 -4.64 9.13 -197.98 -1.81 -6.45 16 13 C 0.18 1.04 9.92 84.71 0.84 1.88 16 14 C -0.25 -0.68 5.40 -19.69 -0.11 -0.78 16 15 C -0.05 0.22 2.82 71.24 0.20 0.42 16 16 O -0.56 2.28 12.82 -148.98 -1.91 0.37 16 17 Si 0.77 -3.59 29.92 68.60 2.05 -1.54 16 18 C 0.22 0.65 10.99 84.71 0.93 1.58 16 19 N -0.58 -3.61 10.46 -197.99 -2.07 -5.68 16 20 C -0.12 0.44 7.42 31.12 0.23 0.68 16 21 H 0.15 -1.96 8.14 -2.39 -0.02 -1.98 16 22 H 0.13 -1.09 8.14 -2.39 -0.02 -1.10 16 23 H 0.15 -1.83 8.14 -2.39 -0.02 -1.85 16 24 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H 0.12 -0.43 7.36 -2.39 -0.02 -0.45 16 26 H 0.42 -1.28 8.82 -92.71 -0.82 -2.09 16 27 H 0.16 0.64 5.04 -2.91 -0.01 0.62 16 28 H 0.10 -0.94 7.96 -2.39 -0.02 -0.96 16 29 H 0.41 -5.85 8.74 -74.06 -0.65 -6.50 16 30 H -0.29 -0.87 7.06 99.48 0.70 -0.16 16 31 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 32 H 0.20 -0.55 8.06 -2.91 -0.02 -0.58 16 33 H 0.11 -0.38 8.10 -2.39 -0.02 -0.40 16 34 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 Total: 0.00 -30.56 304.22 -4.53 -35.09 By element: Atomic # 1 Polarization: -18.05 SS G_CDS: -0.28 Total: -18.34 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 6.06 Total: 21.17 kcal Atomic # 7 Polarization: -8.65 SS G_CDS: -5.65 Total: -14.30 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -6.40 Total: -17.48 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.05 Total: -1.54 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -0.30 Total: -4.60 kcal Total: -30.56 -4.53 -35.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_12175864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.579 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds